Array 1 7589-9263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAFI010000009.1 Lactobacillus johnsonii strain WCA-380-WT-3D Contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7589 36 100.0 30 .................................... AAATAGAATATATATTCCTGTTAATTCAGT 7655 36 100.0 30 .................................... GTTATTTTGATAATAAACACGGTCGTGAGT 7721 36 100.0 30 .................................... GCTAATTGGTTTAAAATCATATTTTTTCAG 7787 36 100.0 30 .................................... GCAAAGTTGCCCAAGTCTTGCCAATTATTG 7853 36 100.0 30 .................................... TGGCTTAGGTTCCATTGACCGGCCCATTTA 7919 36 100.0 30 .................................... GGTTCAGTCCCAAACTTGCCACCGTTATTA 7985 36 100.0 30 .................................... TTATCCAAGATCTCTTTAAGCGTCTCTTGA 8051 36 100.0 30 .................................... AATGCTCCAGCATTGGGAGTTGATCGTTGT 8117 36 100.0 31 .................................... AAGGATATGCTTTAAACTTCACTGTGGCTGT 8184 36 100.0 30 .................................... CGTTAAAATCGTAAATATAACGCTTAGCTC 8250 36 100.0 30 .................................... AATATGCACGACTAGGTATTTGAATGCTAT 8316 36 100.0 30 .................................... ATTACCATTTGCTGAAGACATCAATTCAAT 8382 36 100.0 30 .................................... TCATTGATGAAATCCCATCTGATGAATATG 8448 36 100.0 30 .................................... CCATTACCGATCATTTGAGACCACTGCATC 8514 36 100.0 30 .................................... TTGGAGCGAGCGAACCGACTTAAGCAACTT 8580 36 100.0 30 .................................... GTTGTTAAAGACATATCAACGCCTTCTGTT 8646 36 100.0 30 .................................... CAGCATTTCAGAAGATTAAGCAGCAATTCT 8712 36 100.0 30 .................................... AAATGGCTTGCTAATGAAAAAAAGCACGTC 8778 36 100.0 30 .................................... AGTAGTAATTTGAACTTCGCCTAAGTAGCT 8844 36 100.0 30 .................................... AAATGGACAAAATTGATTTAAGTTTACCAA 8910 36 100.0 30 .................................... TTGGGCGTTCCTTATTGATCCATGTAGCGT 8976 36 100.0 30 .................................... AAAGCCAAAGTTCTAACAAACAAAAATCTA 9042 36 100.0 30 .................................... GTTGGGCACAAATTATGGAAGCTCAAAGCC 9108 36 100.0 30 .................................... ATTCATTGCTTGCCTCAGATGAAGTGTTCG 9174 36 83.3 19 ..........................A.A..GC.GG GCTCAAGACCAAGTAACTA Deletion [9229] 9229 35 72.2 0 ......AC.A.............-..TA....CTCT | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 98.3 30 GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Left flank : CTAAAAATATTTTAGATAAATATATACCTCTTATAATAAAAAAATATATCGAAAATTTAGATGAAGATAATCGAAATAAGATAATAAAAGCATATTATAATTTAGAATCTTTAGTTCAGGATTCGTTATTTTTAGAAGATTTACCGCTAGAACTTGATTTTAGTGAAGATTTAAAGAAGTTTCTAAAATTAGAAAATTTTCATTTAGATTCTAAGTTTTTAAAAGAGCCCTATGCTATAATTGAATCGATCTTAAGAATCTATCAAACATGTAATTTGAAGACTGTGCCAGTTGTCTGTAATGTCGCTCATTATTTAGATAGAACACAGTTAAACATGTTGAACAATTTACTAAAGTCAATGAAATTGAAAATGATTTTAATAGAATTCACATCTAAGGATGTTCTGGTTTATCCGAAAGATGCTGATTACTTCTACATTGATCAGGACCTTGTTGATTGGTACTGACAGCTATCATTAAAAGATAATTATAAATTATCG # Right flank : TTTATAAAAATCATTAGTATTAATTAAAAATATTAATGGCTTTTTGTTTTGTTGAATTTGGGAATCTTATCTAAATTATCATTTTCTTTTGCTTCTAAGTAATTAAAATATTCTTCAGAGAACTTGCCGTCTGTTAGCCAGACCATGTTATCGTTCCTTTTGGTTTTATTTTTGGTCAAAATACACACCTTCAATAATTTAAATATTGTTAATTAAAATCTCTAGTTTTAAAAGGATAATAGAACAGAAAAAATGAGAAATCTAAGATTTAAAAAGGATGATTTTCTATTCATTAGAACAACATATCCTAGTTTATTTATTAAATTTAAGAATAGTTATGAAGAAAATGGAATTGTTAATGTACCTATGCAAAATGAAAGGGATTATGATTATTACTTTGATATAGTTGGGGATTATATAGCTGCCTCATTGAATGAAGCGGGGGAATTAAATGAGGACGGTCTAAGACTTGAGGCTGCGTGGGATTATGCAGACTGGTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //