Array 1 107-1258 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEJR01000078.1 Staphylococcus pseudintermedius strain ST283 1 K1_S1_L001_R1_001_contig_78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 107 36 88.9 30 ...A...........G.C...T.............. AAATGCTTTGGTAAAGATAAAGGCAACGGC 173 36 100.0 29 .................................... GAATCAGTTAAATTGCCTAAAGTGTCATC 238 36 100.0 30 .................................... GAATGCTTTGGAAAAGATAAAGGCGACGGC 304 36 100.0 30 .................................... TAAAAACATCGGTTTAGGTACGATGGTTGC 370 36 100.0 30 .................................... CAGAGAACATCACAACGAACAACATAATAT 436 36 100.0 29 .................................... TAAAATCAGAAACAAAAGGGCAAGCGGTT 501 36 100.0 29 .................................... AAAGTTAGACAACTGGACTAAACAAGCAA 566 36 100.0 29 .................................... CTAAATGCGTCTTGCTACTCACACCACTG 631 36 100.0 29 .................................... AGTGGTTTTGCTTCCTTAGCAAGGAAATC 696 36 100.0 30 .................................... CATCATATTTACGTTTTTGCTCATCTTGAA 762 36 100.0 30 .................................... TTGGTTTTCGGACAGTTTAGTGTCTGTGAC 828 36 100.0 29 .................................... TACTTTAATCTGGAAAGACGGGGAGATGG 893 36 100.0 30 .................................... TTTAACTAAAACTGGTTATACGACTGAGCG 959 36 100.0 29 .................................... AGCAAAACGGTTCAAACGTTGGGTAACGT 1024 36 97.2 30 ............................A....... AATGCACGTGCTGTTATGGTGAAAGGCTAT 1090 36 94.4 30 ...........T................A....... CGAAAGTAAAGATAGTATGCAAGGTGCAAG 1156 36 97.2 30 ............................A....... GTTATGATGTTTGGCGATATGGGTCGTCGT 1222 35 83.3 0 T........T................-.CA.C.... | TC [1254] ========== ====== ====== ====== ==================================== ============================== ================== 18 36 97.8 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : AAAACTTTGAAATATGATGTGCTAATGTTATTGTCATAGCAGATATAAAACTTTTACTCTATAACAAGAGATAAAACGAATCAGTTAAATTGACTAAAGTGTCATAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //