Array 1 108316-106412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRWN010000002.1 Salmonella enterica strain 1895 NODE_2_length_475312_cov_137.727806, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108315 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 108254 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 108193 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 108132 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 108071 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 108010 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107949 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107887 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107826 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107765 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107704 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107643 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107582 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107521 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107460 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107399 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107338 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107277 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107216 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107155 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107093 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106990 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106929 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106868 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106807 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106746 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106685 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106624 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106563 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106502 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106441 29 96.6 0 A............................ | A [106414] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125940-124447 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRWN010000002.1 Salmonella enterica strain 1895 NODE_2_length_475312_cov_137.727806, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125939 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125878 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125817 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125756 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125695 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 125634 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125573 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125512 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125451 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125390 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 125329 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 125268 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 125207 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 125146 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 125085 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 125024 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124962 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124901 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124840 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124779 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124718 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124657 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124596 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124535 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124474 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //