Array 1 171127-173108 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMC01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712461, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171127 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 171188 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171249 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171310 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171371 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171432 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171493 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171554 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171615 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171676 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171737 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171798 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171859 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 171920 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 171981 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172042 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172103 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172164 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172225 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172286 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172348 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172409 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172470 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172531 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172592 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172654 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172715 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172776 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172837 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 172898 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 172959 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173020 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173081 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189616-191536 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMC01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712461, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189616 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189677 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189738 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189799 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189860 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 189921 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 189982 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190043 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 190104 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 190165 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 190226 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 190287 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 190348 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 190409 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190470 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190531 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190592 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190653 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190714 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190775 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190836 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 190897 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190958 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 191019 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 191080 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 191141 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 191202 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191263 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191324 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191385 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191446 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191507 29 93.1 0 A...........T................ | A [191533] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //