Array 1 46699-43042 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOIY010000011.1 Bifidobacterium adolescentis strain MSK.17.32 NODE_11_length_46763_cov_351.805, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 46698 36 100.0 37 .................................... ACCCGCGCTTGGTCAGGTTGTCGCTGAGGTTGCCGGT 46625 36 100.0 39 .................................... GCGAACACCTCACTTGGAAAGAACGGAATCAACAACCGT 46550 36 100.0 36 .................................... GCAGTCGCACCGCTAGCGTAGGCGTTGGCCTGTGAC 46478 36 100.0 37 .................................... TGTTCAATGGAGCCTCATAGCGCATGCGCTTGTACCA 46405 36 100.0 35 .................................... CGCATGCACGTCCACCAGGTGCACTGGCCGTACGC 46334 36 100.0 36 .................................... CCCAGCCATCAAGCATCGCGACCTTGAAATTCTCAA 46262 36 100.0 34 .................................... CTTCAAGATCGGTGGTGCTTACAATAATCAATCC 46192 36 100.0 34 .................................... CCAGCATTAAGCTCCATCATGCTCAAACAAGCGC 46122 36 100.0 35 .................................... CCGGCTTCCATGACGACGCGGGATGCGCCGGAATT 46051 36 100.0 37 .................................... ATGCGAGCAGATTCCGCAGTCCGGTGTAGGCGTCCAC 45978 36 100.0 36 .................................... CTTGGCCGTCGATACCAGCGCCGATCGCCAGACCAC 45906 36 100.0 38 .................................... CAGCTGGAGTTGCTGGTGCCGGCGTTGGGTCCGTTCCA 45832 36 100.0 37 .................................... GTCGCGGCATTCCCATCGGCTCGCCGGGCGAGTAAGA 45759 36 100.0 40 .................................... GAGTGCTCTCCGTCGCCCCGCGCTGTTCAAGCAGGTCGAC 45683 36 100.0 35 .................................... ACGCTTGAAAGCGGCACTACCGTCCGGTTGAAACC 45612 36 100.0 36 .................................... CTCCTTCTTCAACTCCTCCAGCTTCCAATTGACGGT 45540 36 100.0 35 .................................... TCCGCCTTCCATTTGCTGATGGACTCGGCGCGCTC 45469 36 100.0 36 .................................... TCGATTACTGAACGGCAGGGTTCGGAGCCTGACCAT 45397 36 100.0 38 .................................... ATTTCGTCACGGCTCAATCCCGCTTCGCCGGACTCGTC 45323 36 100.0 39 .................................... TCCGCTTCACGAAACGGCAGGAATGGCAGGACGAACGTT 45248 36 100.0 39 .................................... TTTCATACGATTTTGAACACCACGATTAGCACGATAAGG 45173 36 100.0 35 .................................... TCACCGTTAACGGTGCGCTGACTGATCTTGCTGAC 45102 36 100.0 37 .................................... GTGTGATTGAGTCCAAAAAGTCGTCAAGGTAAAGGAT 45029 36 97.2 36 ..................................C. TCGATTTTGTTGGTCTCCTTGTATGGGTTTTCGCTT 44957 36 100.0 36 .................................... ATTGGGTGCAGGACTCCCTGCCCGCGATCCTGGATC 44885 36 100.0 36 .................................... TGCACTTTTTGCCCGCAAGCAAGAAGCTAGGCGGGA 44813 36 100.0 38 .................................... GCACCATCGGCGCTGAGGCCGGCACACAACTTAAGTCC 44739 36 100.0 37 .................................... TGTACAGTAGACAACGGTCGGTCATGACCTTGTCCGC 44666 36 100.0 36 .................................... GTGTACCGTCGCGGTGACGTTCTTCATTATCACCGA 44594 36 100.0 35 .................................... CTTCTTCCGTCCGAACATCACTCACCCTTCAACGG 44523 36 100.0 36 .................................... GGCCACAAGGCATCGGCTAAGGTGTCCGATTGGCCC 44451 36 100.0 38 .................................... TACTTCTCGCGGTATTCGAGCAGGTCGCGTTTCGACAT 44377 36 100.0 36 .................................... CGCGTAATCGTGTTCGCGGAGCAGCCGGTGGAAATC 44305 36 100.0 35 .................................... TTTTCGTATGCGTTGATTTGTCCCTTCACGACACC 44234 36 100.0 36 .................................... TTCCAACGCGTGCACGAGCAGCCACTGCTGCCACGG 44162 36 100.0 34 .................................... TGTTCGACCCGTTTGGTGGCATCGGCTCGACCGT 44092 36 100.0 36 .................................... TAGATCATGGCCGAGCATGTCTGCATCGTCTGACCT 44020 36 100.0 37 .................................... CTTCTTATCGGCGGTCTCGGCCTTGGACTCGTTCTTC 43947 36 100.0 36 .................................... TTTGCAATGGCTGGGCGGGAAAACGTGTCTGTTCGA 43875 36 100.0 37 .................................... GCGCAACCAAAACCGACGAAACCACGAAAACGACGGC 43802 36 100.0 37 .................................... TTTTACGCGCGAAAAGCATGTTGGATTGTAAGGTCAC 43729 36 100.0 39 .................................... ACCCCACGAGAAATTCGTTACCGTGCCATCGGCATTACT 43654 36 100.0 36 .................................... ATCCTCGTTCCATACGACTTGTATCGGTTCTTTCAG 43582 36 100.0 34 .................................... GTCGCCTACAATCCGCTGCGCCGTGATTGATTTT 43512 36 100.0 38 .................................... TTCTGCATCCATTCGTAGAGGTTGCGGGCCACGTTCGC 43438 36 100.0 38 .................................... CGCGACTTGCTCAATCATGCCGCGCAGCCCGTTGGCGC 43364 36 100.0 34 .................................... TGGCCTTCGCGACCATCAACGGCGCTACTCCGGA 43294 36 100.0 34 .................................... GTTCGAGGAGGTCGTCAATCGGCGCTCGGAGGAT 43224 36 100.0 39 .................................... TGGTGGATGGCGTCATCCCATGTGAGTCGCGAAACTCAA 43149 36 100.0 36 .................................... GTCACGGCTGGATTCGTCGCCGTCACTGTCAATGAT 43077 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 51 36 99.9 36 ACCTCAATGAAGTCCTAAGCGTAAAAGCTTAGGAAT # Left flank : TCCATCATCTCCCATCGAGTTAGGGGAAATGCGGAACAAAAATCAGTTCATATCATCCTACTTC # Right flank : AGTCACATTATAAAACACTGCAATGACACGTATCTCAAAGCTTTTTGCGAGAGGTCCTTCCCCTTGTCCAGATTAGAGATACATCCCCAGAATGCCCTCACACATAAGGCCTATTGTTCTTAGGTGCGAGCGCTCACCGCGTGTCACAGAAACGATTCAGCACTCGCACCTAAAAACAAACACTCTTCACTTATCAAGCGACATAGCTATGTTGAGCTAAGAATCAAATCACCGTTGGTATGTCTAAATCCGTATACCCACGATGTCCCAAGAAATCCAATCCCTCTTCCGTCTGTGCAATCGTCCCCAAAGAACAGAACACAACGGAATCAGTTGAACCATCAATTTCCTGTTCAACTTGCATGCGAACATCAAGCATCATCGAAGGTCTGACGCGCAATAGAAACACGCTATATTGCAGACGCTCCCCATAATGCTGAAGAATCTTCGCGATATGTGAACGACGATAATCGTCGCTCACATCGTATGCGACTAAATAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAATGAAGTCCTAAGCGTAAAAGCTTAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 242978-243372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOIY010000003.1 Bifidobacterium adolescentis strain MSK.17.32 NODE_3_length_243484_cov_353.384, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 242978 36 88.9 35 ...........A...C...T......A......... CTTTGGTTCGGCACTTCGCTTGGCATGTCGCCGGG 243049 36 100.0 34 .................................... CTGCGGTGCCGCGTCTGCATACGCGTTCGCCCGC 243119 36 97.2 35 ............................G....... GTCTGGTTATCGTCAAGGCTGGAAGGCAGACGCAG 243190 36 100.0 37 .................................... AAGAGTTTCCAGAATCAGCTCATCCAGACCGCTCGAG 243263 36 100.0 38 .................................... CGAACGTCGTGTGGCAGAAAAAGGACGGCTCGTATCTC 243337 36 86.1 0 ...........................A.AT..CC. | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 95.4 36 TCCTCAATGAAGTCCTGAGCTTGAATGCTCAGGAAT # Left flank : GACAGTCTCGATGGATGCGCCGGTCTCGAAGACACGGATTCTTTTGATGAATGGATCGATTTCGATAATCGATTGAAAAAGAAATACGGCGAAGGCTATGTGCCGTCGGAAGTATTTTTAGCTATTCGGAAGGCGGATGACAAGCTCGTCGGCATCATTGATTTCAGACGTCCGCTATCCCCTTTTCTACTGCAATACGGAGGAAATATTGGGTATAGCATTTTGCCATCGGAACGTCAAAAAGGGTATGCCAAAGCGATGCTCGCCTTACTCCTGCCCATCTGCAAAGAGCAGGGCGAGCAACGTGTTCTACTTACCTGTCACAAGAGCAATGAAGCATCAAGACGGACGATTATCAGCAATGGTGGAAAGATGGAGAATGAAATCGTGAACGGTACGGGACGGAACGAAGACAGTATCATCCAGCGATTTTGGATAGACCTCTGAATATTGGCTTTAATCTAAAAAACTGGAGACGGTTGCGCTTCTTCGCCCACAGC # Right flank : GATTTTTGTTCCGCCCTTATAGTGGGGCGGTTTGCGCCGCTTGGTTTGCATAATACTCGGTTTCGGTCCGTTCCGGTGTCCTGTAGCCCAAGGACTGGTGCAGACGCTTCGA # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCAATGAAGTCCTGAGCTTGAATGCTCAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 128301-127898 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOIY010000004.1 Bifidobacterium adolescentis strain MSK.17.32 NODE_4_length_224170_cov_289.512, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 128300 36 100.0 28 .................................... GAATTGGGAGGAAACGACGGCCTGTTTT 128236 36 100.0 28 .................................... ATAGATAGACTTATTCGTCCTTTTGTGT 128172 36 100.0 28 .................................... TCGACCACACACGTTGCCCCACTTGTCA 128108 36 100.0 28 .................................... TCTCCCGCTTCGGCTCCTGCCGACGGCC 128044 36 100.0 29 .................................... TGATTAGGGAGGGTAAGTTGCGCAGTTAC 127979 36 100.0 10 .................................... CAAAATCGAC Deletion [127934] 127933 35 77.8 0 ..G..T.A-.G....A......G............A | A [127915] ========== ====== ====== ====== ==================================== ============================= ================== 7 36 96.8 25 AGTTTGAGCAAAAGGTAATACGACATATATTCAAAC # Left flank : ACCCAAAAGAACTAACCATCCCATCACTGGTGGACGAATTCTGTGGACAATACGCGCAATACTGCGAAGGCTGGCTGGACAAACTACCCGTCCCCGTCTTCGGAAAAAGGCGCTAAAAATGAAGAGAGATAAGGATAACGGCATGTGGACGCTGGTCATGTACGACCTACCCATTACAACGAGAGAGGATGCGGGAGCCGCGAACAGATTCAACCATCTACTCTCTGATTTAGGTTTCGTTCGAGTGCAATATTCCGTCTATGCAAGATACACCCCCACCCAATCAGGCGGTCGTTCTGCGTTAAAGTATATTCAAGCCGGACTACCTCCCCACGGCAACGTGCGAGTACTCTGTGTAACGGACAATCAATGGTCTGATTCACTGAAGTACATCGATAAAAAAACAGCAGACCACAGACGAACAGCCGGGGTTACTGACGCTTTTTGACGACGAAGAATAGTTTAAAAACGTTGATATGAAGCCTTTTGCCCAAACTCGT # Right flank : ATTCAAACAAAATACACAAAAAAGAATAAGCCGGTGTTTCGCCACCCCCACCGGCAAAAGGGCTGTTCACACAAAGATGCGGAGTAAGGAGAGGGCCATGAGAAGTTGCCCGTGAACCCCGCTTTTTGTTTGGCGTTGACATGGCTTGGTTCTTTCCCATCAGTGAGTTCATGTCGTGAACACTGGCATGTATGCGTGACTTAAGAGGGTGCAAGGCATACGGCTTGCTGACAGTCCTTCATGGATTTCAGGACTATCATCCATCGCGCATGTGAGAGTCATGCCATGGATTGTCCCACGAGCTTTAGGGGTATTAAAAAGTGTGGGACTTTGTGCGGGAGACGAGATTCGAACTCGCAATACTTGCTTGGAGGGCAAGGGTGATGACCTTTTCACTACTCCCGCAATAGGAGGGGATGGATTGTGTTTGCGGGCTGGAAAGCACTACATGCAGAGAAAAAATGTTTACGACCGTTCCAAACTTTTTGGAACGGAAGGCT # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTGAGCAAAAGGTAATACGACATATATTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //