Array 1 523789-515418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIBU010000001.1 Wohlfahrtiimonas chitiniclastica strain DSM 100917 NODE_1_length_693874_cov_260.026470, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 523788 28 100.0 32 ............................ AGAAGATGCCGTTAATTGTGGGATATTTACAG 523728 28 100.0 32 ............................ ACCTTTTCTTTCACCACCAGCACCGATAACAC 523668 28 100.0 32 ............................ CACTTGATTGGTGTTTTTCACCAATTTGTGTA 523608 28 100.0 32 ............................ ATATACTTTGCATATATCCAGGAGTGAATGTC 523548 28 100.0 32 ............................ TCGATGATGGTATAGCCTTCACCATAATAATA 523488 28 100.0 32 ............................ AAAACATGAAACTCAGGACTATGTTAAAAAAG 523428 28 100.0 32 ............................ GCTTCGTTATATTTTGCTCTTTCGCTTTCAAA 523368 28 100.0 32 ............................ CGAAAAAAAAACAATAAGCCCGAGCCTGATAC 523308 28 100.0 32 ............................ GGCAACACTTCATCACTAAAATATTTAGTACC 523248 28 100.0 32 ............................ TCTTTGAGCATCTTCCTTATCAATTGGGATTG 523188 28 100.0 32 ............................ AAATGGGGGAACGCAATCAGTTCAGTGGTCGT 523128 28 100.0 32 ............................ ACATGATTTCTCTCCTAATAGATTAATAGTAT 523068 28 100.0 32 ............................ ACGAGAAGGCGTATATACAACAGATATTGTAA 523008 28 100.0 32 ............................ TGGTGAATCCCCGATTTGCTATGAAGAACAAT 522948 28 100.0 32 ............................ ACATATTGAGAAAAGAATTTTTCATAAATTTT 522888 28 100.0 32 ............................ CCTCAATTAATGCAATCGTTGAACTAAAACAT 522828 28 100.0 32 ............................ TTTGTTTTTTTCAGCATAAACCCTTTTTGCCC 522768 28 100.0 32 ............................ TGATCCGCTTCATATTCAACACTTAAACTTTT 522708 28 100.0 32 ............................ CGCTGTCTGTGAATATGACAATGCCGTTTTTG 522648 28 100.0 32 ............................ ACAGGACAGGCGGTTATGGCGTGGCATTTCAT 522588 28 100.0 32 ............................ GCCCTTTTTTATGTCCTACTGAAAAGTAAGGA 522528 28 100.0 32 ............................ TGCTGAAAATAGTCCAATAGTTGGACACTTTC 522468 28 100.0 32 ............................ GCTGCGGCTACTTTTGGACGTGTAAAGAATGC 522408 28 100.0 32 ............................ TTCATCCTGCACGATGCATACGGTTTGCCCGC 522348 28 100.0 32 ............................ TGAGTTGTGCTTCTGTTGATTTTACACGAACT 522288 28 100.0 32 ............................ TGGCCAACAGAGCCGCCCACACTGCCTGAGCG 522228 28 100.0 32 ............................ TAAGCTTTAAAATGCTATTGAGCATTCATCGT 522168 28 100.0 32 ............................ GAGCAAGAAGCATTAGAAGCGAAAAGATTAGC 522108 28 100.0 32 ............................ TGGTGTCGTGATGCAAGCCACATTCGTTACAT 522048 28 100.0 32 ............................ TGGCGTTGTTGCCCCAAAAATTGATAAAAATG 521988 28 100.0 32 ............................ TTCACCAAGACGGAATGGGGTAGCACTCATGC 521928 28 100.0 32 ............................ ATATCATCACCGCGTGCGGTAAATCAAAGCCG 521868 28 100.0 32 ............................ ACAAACAAGCGGACTTATTCGTTGATTTTATC 521808 28 100.0 32 ............................ TAACTCTTCCATGATTTTCTTACTCAAAACTA 521748 28 100.0 32 ............................ ATCTGGCACTTCTTTAAGTTGTGTTTTAAGAA 521688 28 100.0 32 ............................ CTCATGACTACAATTGCAATTTGCTTTCTTTA 521628 28 100.0 32 ............................ AATGGCGTGGGATATTTCAATACGAAAAAATA 521568 28 100.0 32 ............................ TGTCTGGACTGCTGGAATAACTTTGTATTTTA 521508 28 100.0 32 ............................ GCCAAAAGCTCTAACAAATAATTCTGTTGAAC 521448 28 100.0 32 ............................ ATGAAAGAAATACAAAGTTAAAGGAAAAAATA 521388 28 100.0 32 ............................ GTTATATTGAAAATCAAGTGTTGCTGGATGCC 521328 28 100.0 32 ............................ ATCAGGCACAGTATTAAGTTGTGTATTAAAAA 521268 28 100.0 32 ............................ CACAAGATGATATTTTAAAAGCTAAAGTATTG 521208 28 100.0 32 ............................ TTTACTAAGATTCTCTTTTTGCTTGCTTAATG 521148 28 100.0 32 ............................ ACAACCACATACGATCTTGAGTAACTCAGAGC 521088 28 100.0 32 ............................ TTGGCAAACTTGGCTGAGTTAAACATCAAGCA 521028 28 100.0 32 ............................ GAAACAGGCATGACGGGATCAGAAAAGCGTAC 520968 28 100.0 32 ............................ TCCGAAAGGCGGAAAAGGCAAAACTAAAGGCG 520908 28 100.0 32 ............................ AAAGGAAAATATATGGAAACATTCACATGGTC 520848 28 100.0 32 ............................ TCTAGCGCGTGATTCGCATTTGCCACAATCTC 520788 28 100.0 32 ............................ ATCTCCTTTTTATGAATATGCTAAGGCGGAAC 520728 28 100.0 32 ............................ AATTGTTAAGCTATTCCCGATTGTTAAACGAA 520668 28 100.0 32 ............................ ACCACCAATCTCTTTTACTTTACCTGCTACAG 520608 28 100.0 32 ............................ AGCTATTTTTTGCCCTAATACGTTTTTATGTT 520548 28 100.0 32 ............................ ACAGGGAGAGTCAGTCGAAAGACGTGCAGAAC 520488 28 100.0 32 ............................ AATCGCATTTAAATTTATTAAATTCTACTCTT 520428 28 100.0 32 ............................ TGATGAAATAAAATTGGATAGCGATAAAACGC 520368 28 100.0 32 ............................ TTCAAGTTGTTTAAATTTAAAATATGTTTCAG 520308 28 100.0 32 ............................ GTGAATAGGGAAATGCGTTGTGGGTTTACTTC 520248 28 100.0 32 ............................ TTGACGCATTTATCAACCACATCAATGTGACT 520188 28 100.0 32 ............................ AATGACAATTCGTTTAAGTCTTGGAACACTCG 520128 28 100.0 32 ............................ GAGATAACGTTCCGCTGCCGCATACGTTTCAG 520068 28 100.0 32 ............................ CGTTTGATTGTTCACAAAAAATGATTCGTTCG 520008 28 100.0 32 ............................ TTCTGTGTCAATTGTGAACTGATGTCATCGGT 519948 28 100.0 32 ............................ AAACTTTGACGATCCATATTACGACATACCAC 519888 28 100.0 32 ............................ TGTTACTTGCAGCTCACCTGTGATGTCAATAG 519828 28 100.0 32 ............................ GCTTTCATGTGTAATCATCGTGATTAAGCTAG 519768 28 100.0 32 ............................ TTGTTCGAGGTTTTCAATGATGCCGCCGCTAT 519708 28 100.0 33 ............................ GGCATCTAATGACCGCGCTGGCGAATTGGTATT 519647 28 100.0 32 ............................ TTCGCGGCGATAGCGTTCAGTCATTGGGTGGC 519587 28 100.0 32 ............................ ACGATAAAAATGCGTATGCTCCCCAACTAGTT 519527 28 100.0 32 ............................ ACAGATTTAGCGCATCTTCTAAATCAATTTGC 519467 28 100.0 32 ............................ TTGAGTGTACGAAACAGAGCCGTCTGACTGCA 519407 28 100.0 32 ............................ AATTTTGAACTTGTAATAAGCAAATGCGAATA 519347 28 100.0 32 ............................ TTGCTGATCAGTCCACGATTCACTTGTTGCGA 519287 28 100.0 32 ............................ AGGCAATCTCGCTTTACCTTTGTTTTTTTCAG 519227 28 100.0 32 ............................ TAACGTTAAAAATAATATGATGATTGGAGCAA 519167 28 100.0 32 ............................ AAGGCATAGTATTGTGATCAACTGGATAAAAT 519107 28 100.0 32 ............................ TTTTGCGTTGTAATAACAAATTGCTAAACCGT 519047 28 100.0 32 ............................ CATGTTTTGCAAATGGCGCTCTAACTGCTGCT 518987 28 100.0 32 ............................ GAGCGCGTCTAATTCAGGCTGAGTCAATGGAC 518927 28 100.0 32 ............................ TAGTTGGGAGGGCGCATCACCCTCCCCGTTAC 518867 28 100.0 32 ............................ TATTACTCCTAGCCCAAAAGCACCAGTCTTCA 518807 28 100.0 32 ............................ GCGGCATAACTTAGGCACTTTTTCATCAATGC 518747 28 100.0 32 ............................ GATTGTAGTCCATAGTTTTCTTGAGAATGGAT 518687 28 100.0 32 ............................ GACAAACAATGTAAAAGTACCTTTAATTTTTC 518627 28 100.0 32 ............................ AAACAAAAAGAAAACGTTAAAAAAGGCGTATC 518567 28 100.0 32 ............................ TATTTGGATTATAGCCGTGGTATGTATGTTCT 518507 28 100.0 32 ............................ TAAGTGTGCTGTTACTGTTTGTTTGAGCAGGC 518447 28 100.0 32 ............................ CCATAAAATAGCAGCATGCCCATTGATTGGCG 518387 28 100.0 32 ............................ ACATAGGAAACCACGCTGAAAGAATGCAATTC 518327 28 100.0 33 ............................ AGATCATTTCGCCTTTCATTCGTCCAGCTCTCA 518266 28 100.0 32 ............................ AAGATAAAGCACCATTACCGCACCATTTTTTT 518206 28 100.0 32 ............................ TGCTCGATCACATGTGAAATTATTTGATCAGA 518146 28 100.0 32 ............................ CCGCGGCAGCGGTCTAAGTTTGTGATTATTAC 518086 28 100.0 32 ............................ AAAAGTGAGAGCGATTATTTTAACGCCGTGAT 518026 28 100.0 32 ............................ TGGGCGCCCATCGATGTGGCGTGCGGATCTCG 517966 28 100.0 32 ............................ ACTGAATGTTGGGCTTGTGAGCGCAAAAAGAA 517906 28 100.0 32 ............................ TTTTGTTCTGTCACTTTAACATCAATCACAAT 517846 28 100.0 32 ............................ GCCTTTTTTTAACACAAAGAAAACAACATCTT 517786 28 100.0 32 ............................ AAAACAACGGTTTCAGAGCTTGCATTGCACAC 517726 28 100.0 32 ............................ TCTTCTGTCCAAACTCTTGAGTAATCCTTTTT 517666 28 100.0 32 ............................ CTCTAAATAATCTTCAGTCAAAAGCCCTTCAG 517606 28 100.0 32 ............................ AGCAAAGGGAAGAAATTTCAAATAGTATTGCA 517546 28 100.0 32 ............................ GCATCTACTAATCTCTGCCCTTCATCGTCTGG 517486 28 100.0 32 ............................ TTTGTTATCTTCAATCCATGCTTCGCTAATGG 517426 28 100.0 32 ............................ ATCGTCATGACATACAACAATCGCGGTGACCT 517366 28 100.0 32 ............................ GTAGCCATTCTCATTCATTCTTAAGCCGAATG 517306 28 100.0 32 ............................ ATACACGTGGGTCATATATAGTGATGATTTAT 517246 28 100.0 32 ............................ CAGAGTTACCTTTAGTTTACCTGTACTGACCG 517186 28 100.0 32 ............................ TTTCATCGTTTCTGGAACATGTAACTGAATCA 517126 28 100.0 32 ............................ ATCAATGCCGCCGATCACTTCCATAACTTTAT 517066 28 100.0 32 ............................ ACTGTTAAACCCAGTGCGCGTTGCAATGTGCG 517006 28 100.0 32 ............................ ATACTCGTGGGTCATATATAGTGATGATTTAT 516946 28 100.0 32 ............................ AAATTTACTTGCGTACGAAACAGCAAGCAAAT 516886 28 100.0 32 ............................ AATATGATTTCAAGTAGATGCTTTTTGCGATC 516826 28 100.0 32 ............................ TATCTGCGTTATTGGGATCAACACGCAAGAAG 516766 28 100.0 32 ............................ ACCCAAGCCGCCGCCACCTTCAGCAAGATTTT 516706 28 100.0 32 ............................ GCTCCACAGATAATCCGCGCGTGATGATCCAA 516646 28 100.0 32 ............................ ATCATTGGATCAGCGTAGGAATGGGAATCCAT 516586 28 100.0 32 ............................ GATAAAAAATTGATTTGAATGTACTTCAACTT 516526 28 100.0 32 ............................ ATTGAGTCATAAAGCCAGAAGCAGCAATTAAA 516466 28 100.0 32 ............................ ACATCGCACAAAACGAACAAAGCGCAAAGATT 516406 28 100.0 32 ............................ ATGATCGGCTTTCCAGTGTTATTCGCATACGT 516346 28 100.0 32 ............................ TTCACGCATCAACAAATCGCCTTTCTTCAAGT 516286 28 100.0 32 ............................ AATATACATCACGCCTGACAACATCGCAGCTT 516226 28 100.0 32 ............................ GTCCTTGCACGCTTCTTGATCTTCTTCTGAAA 516166 28 100.0 32 ............................ GATTGAGGCAACCCCACTGATCCCATACAGTG 516106 28 100.0 32 ............................ GCCGACTGTTCTAACTGCTTTATCGACCTTTT 516046 28 100.0 33 ............................ TTTTCGCCACCTCTTTAATCATCATTTCTTTAT 515985 28 100.0 32 ............................ TGTGCTATTGAAGCCCTTTGGCGTTGTTTCAA 515925 28 100.0 32 ............................ ATCATGCATTGTAAGCGTCAATGACTCCCCAA 515865 28 100.0 32 ............................ TATTACCCATCGCAGAAGCCTACCACGCTTTC 515805 28 100.0 32 ............................ AAATAGCGTAGCATGTGATCCCCATTTGTCGC 515745 28 100.0 32 ............................ AAAAGGGAAACTTTTTAGCTACGAGCGCACCA 515685 28 100.0 32 ............................ ACCAGATGGAATCGGAGCACCAGCTGATATTT 515625 28 100.0 32 ............................ AAAAGTTAAAACAATCGGATTTTTTGTATTTA 515565 28 100.0 32 ............................ TGACGCTTGCCCACCTTTTCCCCATCCTTGCT 515505 28 100.0 32 ............................ ATTGCAGAACTTTACCACGCGTTCACCATTGA 515445 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 140 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTGAATGCAGGTTCGTGGCTGTCACGCTTGACGGATTATGTGCACATTTCTTCCATTAAGCCGGTGCCCAATCGTGTGACGCATTATGCGATTTATCAGCGTAAACAGGTCAAAAGCAGTGTTGAGCGTTTAGCGCGCCGTTATGCTAAGCGTAAGCATGTGACATTTGAGGATGCCATGGCACATTTGAATGGCAAAACGCCAGAATATTGTGATTTGCCTTATGTTCAGATGAAAAGTGAAAGCACGGATCAACGTTTTCATTTATTGATCCATAGAGTAAAAGTGACAGCACCAACGGAGGCGGCAAACTTTACAACGTATGGTTTGAGTCATCATGAACAATTGTCTGCTGTCCCTGAATTTTAACCAATGTTTTTTGCTCTTTAAAAATTTGGATAAAAATCAGTAGCTTATAAAATAAGGAAAAATCATTGGTCTTTTCAGGTAAACTACCTTCGATCAGTGATTTTTCCTATCTTTTGTGCCGAAATTTTACT # Right flank : AGTGGTTCCATGGTGAATTTGGAAAGTTTGCGGTTCACTGACTAAAAATTGAGAGTTTATAAATGACATTACTAAAAGTGTTGGTACGACCTTTGTTTGTGTTGAAAATTCATTCATCACATCCTTGCCAGTGTTTGCGGATGCCAATAGCAATACCGGTGGCAGCACACAATGGAATAATTCAGTGAACATTAAAATGTCCATCGATATGTATGACAATGGCGTGATGGATATTGGTGTGAATGCAGAAATTGAAAATAAAAATGAGATTTCAGACAGATTTAAACATTATTGCGGCTATGTGCTTGGGCGTTTATTCAGTGGTCAGTTGTATAAACGCGGCTGGGTGAATAATGAGCATTTTGGTACAAGCAGCCATTAAGACTGTTGCATTTGTAGCCATTGATCAAGTGCGTTGGCAAATTGTTGACGCTCTTTTTGTGATAATGGTGGCGGACCTGAAGTTTGTACGCCACTTGAGCGTAATTCATCCATAAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 655784-652614 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGIBU010000001.1 Wohlfahrtiimonas chitiniclastica strain DSM 100917 NODE_1_length_693874_cov_260.026470, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================== ================== 655783 27 75.0 174 .......ATG...A.C...-....T... GGTTGTGCGGTTGCAGGTGCGATTGAGCATGCGGACACTTAAGACCTTTATGGTTTGATCTTTAAAAATTTGGATAAATATCAGTAAATTACATGCCATTGGAAAAGAATTGGTTTTATGGCTATAAACTGCCGAAATCATGATGTTTCCAATGGCTCTGTAATATTTTTAATT T [655780] 655581 28 100.0 32 ............................ CAACTCTAAAACAACAACATCATCAGAATCAC 655521 28 100.0 32 ............................ ATTGATCTAGCTAATGCCTTCTGGGACAAATT 655461 28 100.0 32 ............................ ACGGCGTGCGGCGATCTCTTCAGCGGTCCCCA 655401 28 100.0 32 ............................ AATGTTGAGGAAGTAAACCTCTTTGTCACTCA 655341 28 100.0 32 ............................ GCTTATGCAATACACAGGCCTAAAAGATAAGA 655281 28 100.0 32 ............................ ACTTAGAAAAACAGAGCAAACAATTATTAGCT 655221 28 100.0 32 ............................ GCAGTTAGAAAAAAAGGCGTTCGGATTCGGTA 655161 28 100.0 32 ............................ TCGGAAATTCAAAGACACTTGTTGCGAGTCAA 655101 28 100.0 32 ............................ TGCTATAAATCCTGCTGCTTTTTTAGCTAGTC 655041 28 100.0 32 ............................ ACTTTAATCAGTGGGCTTTTTTTACGTCATTT 654981 28 100.0 32 ............................ GCCCGATGTGACGCTGACAATCAAAGCGAAAA 654921 28 100.0 32 ............................ TGCGGCTCTAGCTCATTGCCGCGCATCATTGC 654861 28 100.0 32 ............................ TGAAGCGCCTTCAACTGGGACGGGGCAATCTC 654801 28 100.0 32 ............................ CGAATGGATATCGCTTTAGATATTCTTATGGA 654741 28 100.0 32 ............................ TGCAAATTCAACATTTGTAAAACCGCTTGATC 654681 28 100.0 32 ............................ CTCCGCAGCTTTGTCGCTATCTTTGACAATAA 654621 28 100.0 32 ............................ ATCTGTGCCATGCCATTTTATGGCTTCATTGC 654561 28 100.0 32 ............................ TTTCGTTCTGCAGGTGTAGCGTTCTCGCCTAA 654501 28 100.0 32 ............................ CATCGCCGGTGTTCGTTTAGTCATCGCTAATT 654441 28 100.0 32 ............................ TGGTCACCGATCTTAAAGGGCTTTACAAGTCT 654381 28 100.0 32 ............................ TAAAGCAATCAACTGATGGTGCTAAACTAGGG 654321 28 100.0 32 ............................ TTAATGCCAAGTGCAGCACCTGATTTGAATAT 654261 28 100.0 32 ............................ ATAAATTTTCTTTCAAAAAACTGTTTACATTA 654201 28 100.0 32 ............................ GTCATGTCAGCCATTGACGATATAAACTGATC 654141 28 100.0 32 ............................ CAAAGCCTTCGCCAGTTTTAAAGACTCCTGAA 654081 28 100.0 32 ............................ TGTGATGAATATTTCGCTGCCTTTTTGGAAAT 654021 28 100.0 32 ............................ ACCCACAATGCCGCCAAATCGCACCATTTCGG 653961 28 100.0 32 ............................ TTTTAAGCGGCGATCAAAGTTATTCTGAACAG 653901 28 100.0 32 ............................ AACACGCTTGTGCAGCGCGGTAGTGTTAGCAT 653841 28 100.0 32 ............................ CGCATTATTTACTGAAGCCACGTTAATATCTG 653781 28 100.0 32 ............................ AGATGGTGCGCGCGTGATTGCAAAAGGCGGTG 653721 28 100.0 32 ............................ ATTTGGGATTGACCAATCTTGACCGTTAAAAT 653661 28 100.0 32 ............................ GCTGTCATAATCGATTGTTCCCGCATTCGCAC 653601 28 100.0 32 ............................ TGTCGGCACATCGCTCCATTGTCCTGTTTGCC 653541 28 100.0 32 ............................ AAAATGGCATAGCAATGCTGACCTGTATCAAG 653481 28 100.0 32 ............................ TCAAGCGTGCCCTCAATGTGTTGAAGTCGGTT 653421 28 100.0 32 ............................ GAGATATCTCACATCTTCTTTCTGCTTCGTTT 653361 28 100.0 32 ............................ TCGCCCTTTTTGAATGATGTGCGCATTACTGG 653301 28 100.0 32 ............................ TTATCGTTATTGTTCGATTATTAACTTTTGAA 653241 28 100.0 32 ............................ AAAAGAGTCCATCTTCCTTAATGTTGCGGCGC 653181 28 100.0 32 ............................ CCAAGATCATGGGACAAATCGTCCTAACAAAG 653121 28 100.0 32 ............................ GCGTAGCATAACTTGAGAGTAGTCGCTACTCG 653061 28 100.0 32 ............................ TTTTGATCAGCATTGGCAGGTATCTCATAAAA 653001 28 100.0 32 ............................ GTCCTCGATAATCAAATCCGAGCCCGTTGTGC 652941 28 100.0 32 ............................ ATCATCTGATCTTAAAAAGTATTTGACAAATA 652881 28 100.0 32 ............................ GAGCTTGCATTACTCCTGTGATGATGTATCTC 652821 28 100.0 32 ............................ GCGTAAATCATTTGAATCATGCGCCACAATGT 652761 28 96.4 32 .............C.............. TAGCTTTAAATGCCTGAGCCTTATCAGGATTA 652701 28 100.0 32 ............................ ACAATACCGCCATTGGCATAACCTCGTAGCCT 652641 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================================================================================================== ================== 51 28 99.4 35 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACAAAAAATTTCTGTGCGTATCGTCAATGAAGTTAAGCACGTGAACCGCATTGTGTATGACATCACAAGTAAGCCACCTGCAACGGTGGAGTGGGAATAATTTAGTTTCCACGCATTGACATGAACACATAAAATGGCCTAAATAAATATTAGGCCATTTTTTTTAATGATTTTTAGGAGAGTTGAATGAAAAAATTATGGATGATTACAACCATTATGGCAGTTTTAACAGGTTGTGCTTCTGTTGAGCAAGATACCGTGGTGCATGATTTTACTGCATATGGCAAGCTCAATGAGCCTTGGCGCATCGTGGTCAAGCATGATGATCAGTTAGAGATTGAAGGGGTAATGGTTCGCGAGGGTACATTGAAAGTGACGCGATCTGCATATGCAAAAGGTGTTGAATTCTCAGGGGATTATGATGGGCAGCCATTGACATTAAACATCCGCTCATTGAAGTGTAAAGACAGCAATGGCGATGAAACAGACTTCACTGCCAC # Right flank : GACCGGAGCTGTGCCATCGCAATGGGATTATGAACAGACAGTAAAATTAATGCTTTAAGTTACTCACCATAATACGCCCAAAGCAGGACAGGTTTTTTCTTGGTTTGTAAAAGCTTGTCCACTTTGCGCATTGTGTCATCATCCACAACCGGGCAGCCTTGACTGAAACCTAAAGGCAAATAGTTTGGGAAAGTTTCTTCATTCGGAATCATCTTAAAAGAGTGGAGCACAATGTAACGCTTAAAGGCATTGCTGTTACTCGCCTCTAGTCCATGGAGTTTGTAGTGAATGCCAATTCCCCATTTGCTCGGTGCTCGGATGCCCACACGATATTTACCAAGAGAAGATGCATAGCTATTCGGTTGATTGCTAAAGACAATGTTTTGATTATCACTCTCAAAGCCTACATTGCCATAACCATGGGCGACGATGCTTTTGATCTGCGGTGATTGTGTTTTAAAATTCCACACAAAAAAGCGATCTTTACCGGAATGGCGCGC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //