Array 1 49927-47584 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWN010000002.1 Streptococcus thermophilus strain CF3_14 NODE_2_length_174651_cov_255.165382, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 49926 36 100.0 30 .................................... GAAATTGAAATAATTCGAGAAATAGAACTC 49860 36 100.0 30 .................................... TATTACTCTTAACTGGTTGTTCAGAAGCAA 49794 36 100.0 30 .................................... CATTTAAGAGCATGTTAGACAAAGAGATAA 49728 36 100.0 30 .................................... TACATCGTGGAAAAACAGTTAAAGCTTCTA 49662 36 100.0 30 .................................... ATATTCATATTCCCTGCTCATGTTTGATAG 49596 36 100.0 30 .................................... GATAGCAATAGCTTTCTTGACCTAAAAGAC 49530 36 100.0 30 .................................... GAGGTCTGTAATTTCATTCCCTCGTAATCT 49464 36 100.0 29 .................................... AAAGGTTTCTCTAAACACATGCGGAATAT 49399 36 100.0 30 .................................... GTCATAGTACCAAGCACAAATAACGTTAGT 49333 36 100.0 30 .................................... GTGTATTTAGTAATGGTGATTTTTTAAATT 49267 36 100.0 30 .................................... CATTCATTTTTTATATATCAATAAAACTTT 49201 36 100.0 30 .................................... GGGGATTCTTATTTCACTGTAGTTACGATG 49135 36 100.0 30 .................................... CAAAAATTGATGTCACAATTAATAAAGGTG 49069 36 100.0 30 .................................... CTATTTCTGACAATGGTTGAAATTGTGTTC 49003 36 100.0 29 .................................... CTTTTTTTAAATTAATTTATCGTAAGCAA 48938 36 100.0 30 .................................... AACAAACTTATGAGAACGGTTGAACGGCTT 48872 36 100.0 30 .................................... AGCCCGCTTATTGCTTCAGTTGGTTTATAT 48806 36 100.0 30 .................................... TGGAGCAACAAGAATGATTAACTCTAATGC 48740 36 100.0 30 .................................... TTTGATGGATATCATTGATAAACTATACGA 48674 36 100.0 30 .................................... TAACGAAAGCAATACCAATCGTGCTAAAGC 48608 36 100.0 30 .................................... TATTCCTATGGTCGATATTCGAACAGTCAA 48542 36 100.0 30 .................................... CAGGGGACAAGGACTTTGACCCAACAGAAG 48476 36 100.0 30 .................................... AGAAACACCTAATGGTCTCTTAGAACCCGA 48410 36 100.0 30 .................................... AAGAAGTTAAAGACAACTTTGTTAAAGACT 48344 36 100.0 30 .................................... GAAAAAGCATCCATGATAGTGCTTAGACCT 48278 36 100.0 30 .................................... CGGAATGGTATAAAGAATACAAAGAAAACG 48212 36 100.0 29 .................................... CCAAGTATCACGCAAAGAAATCAACGAGA 48147 36 100.0 31 .................................... TTGACCTGTTTATCCTTGTTAACTAGAATAG 48080 36 100.0 30 .................................... AGAGCACTAGCATACTGTTTAGTCCGAACG 48014 36 100.0 30 .................................... AGGCAAGGTATTTGATCCAACAGAAGCCAA 47948 36 100.0 29 .................................... CATGATTTACAACCACGCGCTAGACCAAG 47883 36 100.0 30 .................................... ACCTAGAAGCATTTGAGCGTATATTGATTG 47817 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 47751 36 100.0 30 .................................... TAATAGTTTACCAAATCGTCCTTGTTCCAA 47685 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 47619 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 36 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 152638-154390 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQWN010000001.1 Streptococcus thermophilus strain CF3_14 NODE_1_length_204361_cov_265.352288, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 152638 36 100.0 31 .................................... AAACACTTGGTCCATTACTCAGTCCTCAGAG 152705 36 100.0 30 .................................... AGATACGTCAGTTGTGTTTAGTCTTGCTAC 152771 36 100.0 30 .................................... ATTCGGTGTACCTGAATATACTAGTCGTGA 152837 36 100.0 30 .................................... AAACCGTTCGACAATTACAAGAGTGCGGAA 152903 36 100.0 30 .................................... TATTAAAGGTCCAGAAGGCCTTTCAACTGA 152969 36 100.0 30 .................................... TATCTCTGAAGGTAAAGCTGAAGGAAATAA 153035 36 100.0 30 .................................... TCCTAGCGATTACTCATGGACACTTGTAAA 153101 36 100.0 30 .................................... GGGTGAAAACCCTAATAATACCACATTGAA 153167 36 100.0 30 .................................... ATTTAAAGCAGGAATGTTCTTCAGTTTCTC 153233 36 100.0 30 .................................... CGAGTTTATGCTCTTGAATGGTTGTCGTAT 153299 36 100.0 30 .................................... TATGAATTGTCAAATTAACGGTTGCGCTAA 153365 36 100.0 30 .................................... AGTGTTTTTCTGAACACCGTTCACAGTCAG 153431 36 100.0 30 .................................... CGATGGAAATGATGGCTTGCCAGGTAAGGA 153497 36 100.0 30 .................................... CGCTAGGGTCTCTGGTGACGCTGAGGTCTC 153563 36 100.0 30 .................................... CCTGACGCATATGGAAATCCTAACGGTCAG 153629 36 100.0 30 .................................... AAAATCATCTAAATACATGTGTGTAACAAG 153695 36 100.0 30 .................................... AAGCACTGGACGACAAATAAATAATTGAAG 153761 36 100.0 30 .................................... GAACAAGAAACTTATGAAGTCGAAAACCGA 153827 36 100.0 30 .................................... CAACCCAGACATGAATGTCATTAGATATGT 153893 36 100.0 30 .................................... ACGGTCTGTATCGAAAAAGACAACTTGGCT 153959 36 100.0 30 .................................... CTGGTAACTTTGAAATCTAACGCAGAATAG 154025 36 100.0 30 .................................... GAACTTTCAGCTTATAACACGCATAAGAAC 154091 36 100.0 30 .................................... ATTGACCTATTCAATGTATGGGTCACGTAA 154157 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 154223 36 100.0 30 .................................... TAACAAGCTGTACGACTTGTACTATCAGGC 154289 36 100.0 30 .................................... GGGTGCTGATATGTCTACCTCTGGTGGAGC 154355 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //