Array 1 84633-84217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXB010000004.1 Tychonema sp. LEGE 07196 NODE_11_length_141804_cov_10.944691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================ ================================================ ================== 84632 44 97.7 22 ..G......................................... GGATGTAAGTCCGTCGGAAGAA 84566 44 100.0 29 ............................................ GGATGTAAGTCCGTCGGAAGAGGTTCGAG 84493 44 97.7 48 ...........................................G TCCGTCGGAAGAGGTTCGAGGTTCGAGGGAAGAAGGAAGAGGGGAGAA 84401 44 100.0 22 ............................................ AGATGTAAGTCCGTCGGAAGAG 84335 44 100.0 31 ............................................ GGATGTAACGGATGTAAGTCCGTCGGAAGAA 84260 44 100.0 0 ............................................ | ========== ====== ====== ====== ============================================ ================================================ ================== 6 44 99.2 31 GGAAGTTCGGCAACGAGCAATGTACGGGATGTAACGGATGTAAC # Left flank : GAAACTCAATTCGGCTTTTTGCTGGCGGCGGCTGGTGTCGGAATGGTCTTCGGCGCAGCTTTTTTGGGTCACTGGGGCGATCGAATGCAGCACAAACCTTTGCCCTTACTTGGCTTCTTGATGATGGGTTTTGTGTTGGCAATGTTTGCCTTTAACAGACAGTTGTGGCTGGGATTTAGTTTGAGTGCTCTGTTCGGTTTTGGCGCTTCTTTAATTAACGGCCCGATGCAAGCTTTGATTCAAGAGAAAACTCCAGAATCTATGCGCGGAAAAGTCTTTGGCTTGGAGAACAATGCGATTAACATTGCCCTCAGCTTGCCTTTAGCAGTGACCGGCCCGCTGACGGATGCTGTGAGCAAAGTAGTGGGATCGGATGACTTGGGTTTGCGGATCGTGCTGCTGAGTTTGGGCTTTTTGGTCTCGGTGATGGGCATGGTAGCTTGGCACCACACTCGCAAAGTCTTAAAGGATGCTCTGTGAACTTTGGCAAGAAGTCCGAG # Right flank : GGATGTAAGTCCGTCGGAAGAAGGAAGATGGAAGAGGGGAGAAGGAAGAAGGAAGATGGCTTTCTTTTGGCGATCGATCTCTAACATATAGCGGTTCGATCGCGTGGTGAGGTATGCCCAATCCCTCCGCAACGCTAGAGCCCTTCGGCCCAATGCCCAATGCCCAATGCCCAATGCCCCATCCCTCCGCAACGCTAGAGCCCTTCGGCCCAATGCCCAATGCCCTATAGCGTCAGATCGCGGTAAACCGGCATAGAAACCGCGATTTCTTCTATTTCTTTTCTGCCTCTGCTGTTCCACAATTTTGCGATCGGACGATCGCACACCGCCCCAGCGCGAAACTTTTTGTAAAATATCCGCCGGTGAACTACCAGAGTTCGATCGTAGAGATTAAAGTAGTATCAAAGCTTTCATTAAAATTCATAGTTAGTTGGAGGTAAAAAAATCAGTGCAATTAAAAACTAAAGTAGCCGTCAAGCGTGCAACGGGTGGATTTGCTT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.29, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGTTCGGCAACGAGCAATGTACGGGATGTAACGGATGTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 15146-10389 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXB010000032.1 Tychonema sp. LEGE 07196 NODE_45_length_61954_cov_11.002167, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 15145 37 100.0 32 ..................................... AATACTAGACAACCACTAGACACAATGCTAGG 15076 37 100.0 37 ..................................... AGCACTCTCAGAAGCCAGAAGAGTTTTGGGCGATTGC 15002 37 100.0 37 ..................................... GCTGTATAGGAAAAGATTTGAGTATCTTTTTTGCCTA 14928 37 100.0 38 ..................................... TTAAAGGGCAGCTCAATCCATCTGTAATTACTCAAAAA 14853 37 100.0 38 ..................................... TCCGCGACCGGACACTTACTGTCAGGGAATACCCTGAA 14778 37 100.0 41 ..................................... TTAACTATGCTCTAACAACAGCAACCTGAGAAAATCCTTTA 14700 37 100.0 42 ..................................... TTGGCTTGGAAAATTACTAAGATGTTGATTGGAATCTTAGGG 14621 37 100.0 36 ..................................... CCGTAATCGTAAACGAAGGGCAAGCAGAATCAGCGA 14548 37 100.0 44 ..................................... GGGAATAGATAATAAATATTCGATATCAGCAGGAATGAAAATGA 14467 37 100.0 36 ..................................... CGCCAGGCCACTGAGGTATGGTTGCCGGCAACCATA 14394 37 100.0 37 ..................................... TAGAGTGTCCTCACGCCACCTTATCAATAGACAAAGA 14320 37 100.0 36 ..................................... CCGGCGATCGGAGTGGGAGAAACAGTCGGCACTTGG 14247 37 100.0 39 ..................................... TTGGGTTTAGTGCTGATTTGGTTGGAAAACACGTATCAA 14171 37 100.0 37 ..................................... TTCGTCGATCGTCACGAATTCCACCTCAGTTCCACCA 14097 37 100.0 36 ..................................... CGATACTTACACGTTCGCGACGATGCGGAAGCTCTG 14024 37 100.0 37 ..................................... CAGTAAGGTTGTTATCGGACATTTAATCAAAAAACTA 13950 37 100.0 37 ..................................... GAGAAAAATCAGACGTTCAACTTTTACCCAATCGTGA 13876 37 100.0 38 ..................................... CTACCAATGTACTTCTTACCACTAATAGTATTTTCTGC 13801 37 100.0 38 ..................................... TTTTTGAACAAATTTAAGAGCTTTCATCTTCTCAAAAC 13726 37 100.0 34 ..................................... GCAGTGGATAAAAGTATCTACTTCTTTCATCTTG 13655 37 100.0 34 ..................................... AACAAATTGATTAGTTTTCCTAGGTTAACTTCGG 13584 37 100.0 41 ..................................... TGGAAAATCCAATCTTACATAATCTGGAGAGTGCTTTCTTG 13506 37 100.0 34 ..................................... GTATTGACAGAAATCGCTTTCATGTGTTTTCCTA 13435 37 100.0 35 ..................................... AATAGTTCATTAGCCATTGTGAGTAAGTCCTGAGA 13363 37 100.0 33 ..................................... TTAATTCTGGGTCAGAGATAGATTCTAAATTTT 13293 37 100.0 33 ..................................... ATATTAGTGATATTGCTAAATAGAAGGTAGATT 13223 37 100.0 40 ..................................... TACGTTCCAGGCTCTCAACATCGTTTCAAACAAGCTCAAA 13146 37 100.0 35 ..................................... CTCGAAAGTAATAGGAAGAGATTCCCATAGATTAT 13074 37 100.0 39 ..................................... TAATCCTCCTAAAGCAGGAAATCTCAAAACTAGAGGAAG 12998 37 100.0 36 ..................................... GTTTATGACTGATTTACCTCACCTGTTTTTTGAACT 12925 37 100.0 41 ..................................... TCTTTGCTTAATAATTGCTCTTCTGTGGTTACAGGGAAAGC 12847 37 100.0 35 ..................................... AAAATTAAATTTCAGATTGGGCAAGTTCGCGTACC 12775 37 100.0 40 ..................................... CACCTGGCAGGGCTAGCGGCGCTGCGAGCAATTCTGTAAG 12698 37 100.0 38 ..................................... ACAGCCGCTCTTTACTCCTTACCATTACCGCAGACCCA 12623 37 100.0 36 ..................................... TCCGCGGCGGGCGCTAAAACTTTTGTTTCATACCAA 12550 37 100.0 37 ..................................... TAGAGCGGACGATCGCTCCCGCGGGTTCTGGCCGCAA 12476 37 100.0 33 ..................................... CCTACAATCACCCTCACCAACTGATCCAACTGA 12406 37 100.0 36 ..................................... AAGAGAGCAATCGTATACCTGCATCATCTTCTTCAG 12333 37 100.0 39 ..................................... CCCTCTTGTCGAGCTGGGGGTAGAGGCGCTCCCGTTTCA 12257 37 100.0 36 ..................................... GTTGAACATTGGCAGCTAAAAAAAGAGGCCCTAAGA 12184 37 100.0 33 ..................................... CAAACGCATCCAGTGTCGTTTGCACTATCAAAT 12114 37 100.0 41 ..................................... GGCGCAAGCCCCGCCAGTCCAACCTGACGGGAACGCCTAGA 12036 37 100.0 33 ..................................... TCCGAGGGCTGCACGTCGATCGCGGTTGTCTCC 11966 37 100.0 36 ..................................... CGCGCTGTGTCGGCTGCTGGCGGTATTTGGGTTTCG 11893 37 100.0 30 ..................................... GTGACAGTAATCGTTGCCACGCCGACACCA 11826 37 100.0 39 ..................................... CAGCAAATTTTCGAGAATTTAGCAGCTTGATAGCATCTA 11750 37 100.0 33 ..................................... TAACATATTTTCAATTATTGCCTTTTTTTTAGA 11680 37 100.0 35 ..................................... TAAAGTCATAGGCTTTTCCCCTATTTCCTCACCCT 11608 37 100.0 35 ..................................... GACCGCGATACAACCGTGTTAGAATATTAGAGCCA 11536 37 100.0 35 ..................................... ATTAATTCAGATACATTAATGGAAATTCCATATCT 11464 37 100.0 36 ..................................... GGGTAGTGGCAGTGATGGAAAAGTAAGATTGACTGC 11391 37 100.0 35 ..................................... TCTGACGAGACAATATCAGAGAACAAAGCTTTAAC 11319 37 100.0 34 ..................................... CTGGAAGCGAGACCATAAATTCCACAACCAAACC 11248 37 100.0 36 ..................................... GCAAAAAACCCAGAGCGATCACGCCAACCAAAAGAG 11175 37 100.0 35 ..................................... TGAAGTGATGGAACTTTCCCAGGAGCGCAAAAAAA 11103 37 100.0 40 ..................................... CAGAAACTTCAACGCCAGGAGACACCCAAGATATCAATGA 11026 37 100.0 33 ..................................... GCTACTAAGTCCCTTTCTACCTCATAAACAGGG 10956 37 100.0 37 ..................................... CTCAGTGCGGTTAATGTATGTGCGATCGGTTTGCCAA 10882 37 100.0 41 ..................................... GGGGTACAAATGCCAGAGGGCAAACTACCTGCCGCCCAAAA 10804 37 100.0 40 ..................................... GGCTTGCAATTAATCATGCAATGAGATATTGCAAGCGATT 10727 37 100.0 38 ..................................... CCAATAAAAAGGAAGGGGCCAAGCTGCAGCCGTATTCT 10652 37 100.0 38 ..................................... CGGTCTGACACCGACAGCAGTGAAGATGCTAGACGAAT 10577 37 100.0 38 ..................................... GGGGCCAAAGCAATTCCTAATATACTCCCAATCGAGCT 10502 37 100.0 40 ..................................... CAGGATGAGGTATACAGGCATATAGGCGGGGAGGTAGAAG 10425 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 65 37 100.0 37 GCCGCAATAAACTCCACTCCCTTCTAGGGATTGAAAC # Left flank : GGAAGACAAGCGGCGGACTAAAGTTCACAAAATTCTCAAATCCTACGGGCAGTGGATGCAGTACAGTGTGTTTGAGTGTGCGGATTTGAGCGAAACGCAGTATGCTAAGTTGCGATCGCGCTTGGCTAAATTCATCAAGCCTCCAGAGGACAGTATCCTATTTTTTCCGTTGTGCGCTTGCTGTCAGGGTAAAATTGAGCGCATTGGTGGGGTAGTTCCGATCGATCGAACTATTTTCTTTGCGTAAAAATTCGCCAACCTGTAGGTGTAAAATTTGGGGGGTCAAATTTTTAGGCTATAATCTATATAGAGTAAGGGTTTGATGCTCCCTCTCCGAAAATGAGGTTGGCGAAATCGCTAGGACTGTTGCTACATAAGGATTTTAGGTTAAAGTGCGAGCTATGGTATTGACAGAACGGGGACTGAAATGGTATTTTGGGATGAGGTTGGCGAAACTGAACCTTGAAAACCAAATAGAGCAATGGTTTCACACACCGGCG # Right flank : TGCCAAACTATAAAATTATTGGCTCAAAAATAGATTGATCCTCACCCTGTTTATCCCCTCCAATAACCTCAAACAATCGATCGACTCCACAGCGCCAAGAAAAATGTTCAGCCACAAAACCAGGCCCAGCAACCCTAGCTTTGGCAGCTATTCCAGGCTGTTCGATCGCCCCCAGCATCAAATCAGTCAAATGTTCCCACTCAGGAGCTAACATAAATAAGGTTTCCCCATCAACAACCACAGCCGTAAATTTACTCTCTATCCGCAGCGCAAAATCCGATCGCGTAAAATCATCCGTAGGGCCGCCCTCCGTGCAGATTACCAGCAAACCGCAAGCCGCAGCCTCCAACACCGGCAGATTAAAACCTTCCGCCAAATAGGGAGAAACATAAACATCCGCAGCTTGGTACAACTCAGCTATTTCAGCAAAAGATAGCTGCGTCCCAGTATAAATCAACCTCGGTAAAACCCTCGCTCTTTCCGCATCGTCGAGTACCACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATAAACTCCACTCCCTTCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 39813-35158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXB010000037.1 Tychonema sp. LEGE 07196 NODE_50_length_58625_cov_11.013402, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 39812 37 100.0 33 ..................................... CCTGTGCTTTTTTATCAGAGTGTTGCGACCTAT 39742 37 100.0 35 ..................................... ATCACTAATTAGCTTGTTTGAACAAGCGAACAAAT 39670 37 100.0 37 ..................................... ATAATGACCGTGAATACCTGCAATCACGACTACCTAT 39596 37 100.0 34 ..................................... CATTGGCCCCCTTAGTTGCCCTGTTGAATAGTAG 39525 37 100.0 32 ..................................... TTTAACACCGTGCATCTCTCCCTCTATCGCTT 39456 37 100.0 35 ..................................... GCGAACATTTTAGTGCGATAACAGCCACAAGAAAT 39384 37 100.0 35 ..................................... GGGTGATCGCCAGCTCGGACGAGTTTATAGATAAA 39312 37 100.0 40 ..................................... AAGAAGTTGAAGCGCGACGCACCTGCGACGACTTTTACGA 39235 37 100.0 42 ..................................... AAAATTATTGCCACAGAAGCGAGGAAAGGAAAAGGATACAGG 39156 37 100.0 38 ..................................... AACAATTAGATTTTGAAGAGATGTCGCATCGTCTTTTG 39081 37 100.0 42 ..................................... TTGCGGCTACAAGATACTGAAGATAGAGCATTGATTGTCGGT 39002 37 100.0 35 ..................................... CAAGAGTGCGCCATTTCAATAAGAAATCGAAACAA 38930 37 100.0 37 ..................................... AAGTCGGGGTGTCGCTCTGTCAAACCTCAGAGCTCGA 38856 37 100.0 35 ..................................... TCCACCAACACCCGCAATCTTTAAGCCAAAATCTA 38784 37 100.0 32 ..................................... TAAAATGTGAACTCTGAATCTCTTATTTTCAC 38715 37 100.0 37 ..................................... AACCCAGACTTTAAACATTATCAGCAATTTACCCGCT 38641 37 100.0 36 ..................................... TTCTACTGAGACAGCTAGCTTAGTACAAGAGCAAGA 38568 37 100.0 37 ..................................... GATTTTGCAGCACATCATTTTTACTTTGTCGATAAAA 38494 37 100.0 39 ..................................... TTGTAAAGAATTGCGATCGACCTAAAACAACGATCGCAA 38418 37 100.0 40 ..................................... TAAGCAGCCTAGATCCGAGGGGATGAGAGGGATTAGCAAC 38341 37 100.0 37 ..................................... GGCTATTGACATTTATCAGCAAAATAATGAATAATCA 38267 37 100.0 36 ..................................... AGAGTATTTTGATAAGTGGATAGTAAGTATTAATTA 38194 37 100.0 35 ..................................... TTGCAATCGTTGACCGTTACAGGTCTTTCACATTC 38122 37 100.0 37 ..................................... GGATAGTCAGCAGGGTAGTTGCATTTATTTTAAAAAT 38048 37 100.0 35 ..................................... CTGAACCCTACAGCTATCCCAGAAAGTTTGTACAG 37976 37 100.0 39 ..................................... CTTTAAATAAATATATAAAATACACTATTCATTCTAAGC 37900 37 100.0 34 ..................................... CAATCTCATACTTGATGGCTATGAACCATTTGTC 37829 37 100.0 33 ..................................... CTTACCTTTCCTCATATGACTAAGCTCAGAAGC 37759 37 100.0 35 ..................................... GCGAATCCTAACCGCTGTCTTTCTGACTCAATCCA 37687 37 100.0 33 ..................................... GGGTCTTACGGCGGCAGAAGCCGATGCGACCAC 37617 37 100.0 38 ..................................... TCCATTACTAGCTCCGTCACCTTCTCAGTCAGTACAAA 37542 37 100.0 39 ..................................... GTGGCAAAAGCTGGACGGCTCGACTGCTAGCCAAGCGAA 37466 37 100.0 33 ..................................... CAAAAGTGCGATCGCCTTTATCTACAGGCAACA 37396 37 100.0 35 ..................................... TTCGCGACAAGCTGTACCACCTGAACTAAAAGAGC 37324 37 100.0 35 ..................................... CGGATTGAGCCGAGGGAATATTGAGGTAAAATCTC 37252 37 100.0 36 ..................................... AGCACTAGGGCGTGACAGTAAAATGTCCAGTATCCG 37179 37 100.0 33 ..................................... TCTCTGATTTTATTTTAATGACATGACAATTAC 37109 37 100.0 41 ..................................... GCGATGTGCGAATCATGCTTGGCGCTAGCGATGATGGCTTG 37031 37 100.0 46 ..................................... TCAGCTTTCCAAGCTAGTTTCTGAGCCTCAGTTTTTGCCGTACCGC 36948 37 100.0 36 ..................................... TGACATTAGCGGCCGCTTGTCGTTGCGGGCCTCGCC 36875 37 100.0 34 ..................................... AATCATTACAGATGCGGGAGATACCACAATGATT 36804 37 100.0 34 ..................................... CTTTGGGCGGGGAATTGGCACTGGAATAAATTGA 36733 37 100.0 39 ..................................... TTCATAGATTTTATTCCACATGACCCTTTGGGAGTTAAC 36657 37 100.0 34 ..................................... TTTGGGTTTTGGGCGATCCTTTCTGCTCTGTAGC 36586 37 100.0 40 ..................................... ATCAGTTTGACTTCATTGGGATAGAGAAAATTCCATTGAT 36509 37 100.0 37 ..................................... GAGGAGCATATTAACAATAGCTCATAATGTACTGTTG 36435 37 100.0 42 ..................................... GGGTTTTGTCGAGTTTGTCTGAGTTTTCAAAAACTCATGATT 36356 37 100.0 37 ..................................... CGGTCGCCTGATGGTGAGTTGATGTGTCACCCGCATT 36282 37 100.0 42 ..................................... TAGCTCCCTGGGCTGCCCGCACCACGCTTTCTTGGCTCTCTT 36203 37 100.0 34 ..................................... CCATAAAATATTCCTTAGATTGCCGATCGCACTT 36132 37 100.0 32 ..................................... GGCGATTAACTGGATGTCTCTGTGGTTATTTT 36063 37 100.0 37 ..................................... CGGTTGGCGATCACGTTTGACATCGGATCGAGGTCAA 35989 37 100.0 35 ..................................... AATCCGATGGGCTCGAACGGTGCGGTTGGCGATCA 35917 37 100.0 38 ..................................... TTGATGCTCCCCAAAATTGTTGAAGTGTATCAGTGTAC 35842 37 100.0 36 ..................................... AAAACTCTCAAACTTAGACACCCTGAAGTTTTGAGT 35769 37 100.0 35 ..................................... TTTCCCTGGAATTGGCGGCACACCTGTTAGATCGC 35697 37 100.0 31 ..................................... GATTGTAGTGTGGGCCATCCCTCCCCCTAGC 35629 37 100.0 42 ..................................... CCTAAGTCACCCTTAGCCCTGTCTTACCGGGGAGGCCGCAAT 35550 37 100.0 35 ..................................... TCTAAGCCATTAGGCAATGAGTGGAAATCAGTAAA 35478 37 100.0 33 ..................................... TCACCCTTGACAAAATCTTGGTGAAGCTCCAAA 35408 37 100.0 34 ..................................... GAAGTAGCAATATAAAAAGGCAACAACATATTTA 35337 37 97.3 35 ........C............................ CTGACCTGGGTCAATGGTAATCTGCGGACTTACAC 35265 37 97.3 34 ........C............................ AGGTTGGTTGAAAAAGGCTTGATATCGCTGCAAC 35194 37 97.3 0 ........C............................ | ========== ====== ====== ====== ===================================== ============================================== ================== 64 37 99.9 36 GCCGCAATAAACTCCACTCCCTTCTAGGGATTGAAAC # Left flank : AGTGCCGTCAAAGTCGAAAATAATTAACTTGTACTGATTCATTTTCGTCAAAAAATCCTATAATTAGAATATGTGCGAATAAATCTTACCTAGGAAGGCGAGTTTTGCCGCAGTCCTAAACTCCCTTTTATTAAAGTTTACAGCCTAAACCAGCCCTTTGTTTTTTCCCTTGTGTGCTTGCTGTCAGGGTAAAATTGAGGGTATTGGCGGGGTAGTCCGGGGCGATCGAACTATTTTCTTTGCGTAAAAATTCGCCAACCTGTAGGTGTAAAATTTGGGGGGTCAAATTTTTAGGCTATAATCTATATAGAGTAAGGGTTTGATGCTCCCTCTCCGAAAATGAGGTTGGCGAAATCGCTAGGACTGTTGCTACATAAGGATTTTAGGTTAAAGTGCGAGCTATGGTATTGACAGAACGGGGACTGAAATGGTATTTTGGGATGAGGTTGGCGAAACTGAACCTTGAAAACCAAATAGAGCAATGGTTTCACACACCGGCG # Right flank : TTAGAGCTTCCTATGCCCAAATACTCGCCCAAAACGATCGCTCTCGTAAAAAACCGGGTTTCTTGATTGAGAGTGTATAAGTCCGACTGCTGCAAAAAGCCCGATCGACCACCAGCCTCACAAACAAGATAAACATCCGCTATAATCCAGAGTTTGCGTGTATTAATTGGTTAAGAGTAAAGTATTGCATCACTTTTGTGTAAAGTCCTATGGCACTAATTGTTCAGAAATACGGCGGAACATCGGTTGGTACAGTCGATCGCATTTTGGAAGTAGCGCGACGAGCAGTCAAAACAGTAAAGCTGGGAAACTCCCTAGTTGTCGTACTTTCGGCGATGGGAAAAACGACTGACGGTTTAGTGAAACTGGCTAAGGAAATTTCCGCAAATCCCAGCAAGCGGGAAATGGATATGTTGCTCTCCACCGGGGAACAAGTCTCGATCGCGCTTTTGAGCATGGCACTGCAAGAAATGGGACAGCCCGCAATTTCCTTTACAGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATAAACTCCACTCCCTTCTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 11836-12062 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXB010000062.1 Tychonema sp. LEGE 07196 NODE_88_length_36967_cov_11.316314, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================== ================== 11836 26 92.3 40 ........TT................ AACAATTTGATTGTTGTGGAGTGTCATAGCTTCTAATTGG 11902 26 100.0 43 .......................... GGAAATTTGATTGTTGTGGAGTCTTAATTCAGGAAATAGATTA 11971 26 100.0 40 .......................... CGAGATTTGATTGTTGTCGAGTTCTAGTCGAACGAGGTTA 12037 26 88.5 0 .......TT.C............... | ========== ====== ====== ====== ========================== =========================================== ================== 4 26 95.2 41 GTGAGATACCTGAGCGGGCTAATATC # Left flank : ATTTACATCGGTGTCAACGCTTTAGATTATTCGGGATATCCCGACTGTCGCCTCGATTACATCCAAGCCATGCAGGAAGTATTTCGGTTAGGAACAAAGCAGGGAAGGGAAGGAGAACCTATTAAAATTATAACACCTTTAATTGAACTTAAAAAAACCGAAATTATTCAATTAGGCAACAAGTTGGGAGTGCCTTGGGAGCAAACTTGGTCTTGCTATGCAGGTGGCGAAACTGCGTGCGGTGTTTGCGATTCTTGTCGGTTGCGGCTGGAGGCTTTTGAGGAATTGGGGTTGAAAGATCCGGTGGCTTACGGTTAAATATGACTTACGACGCATCAATTACTCATGGGAAGCGTTAGCGAAAGCAATCTCTTATGAGAGCAATCCCAGCATCTGAGCTATGTTTTATCTAGTAGTCAAATTTACAAATAGACTCTGGTTGTAACGGACAAGATTTATTGGCGATCGGGTTGTTGTAGAGCAATACGACCTCCATTTTG # Right flank : CCGAAATCTGATTGTTGCTGAGGTATAGATGAAATAACTTAGTGAGGGATTTTAGGGGGTTAATGCGAACAATTTTATTGTTGCTGAGGTAAAGTTTGCCTAAATTGCTCAAAGACATTAGTGGACCCAGATCGGAAATTTGATTGTTGTTGAGAACGAGTACATATAGATGAGTTAGGGATTTTAGCGGACTCAGATCAGAAATTTGATTGATGCTGAGGTAAAGTTCTGATAAGTTAGTCATGAATTTCAGCGGTGTGATATCAGAAATGTTACTAGATGAGGATGAGAACGATTCGATCTCTGAAAGTTTAAGGCTAGCTTGTTTGCAGTCAGAAGTAGCAGTGAGCCTCAACATTTCGTTGACAATATCTCTAGTACCGGACTGAAGAGTTTCTTTATTCAAACACCAATCAGTAAATGTACGGTAAGTGCTGCTATCTTTGGACACTGCTACTGACGCAGGAATATCGTATCCTGCTATTACGATCAGGACAGAT # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGATACCTGAGCGGGCTAATATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 79786-79609 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEXB010000011.1 Tychonema sp. LEGE 07196 NODE_22_length_105133_cov_11.812906, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 79785 30 96.7 42 ..T........................... GGGGGCTGGGGGGGTGCTTTCTCAACAAGTAGGAGAAGAATT 79713 30 100.0 45 .............................. AGAAGAAGGGGATACTCTTCCTCCATCATTCCCAACCCAAAATAC 79638 30 96.7 0 .......A...................... | ========== ====== ====== ====== ============================== ============================================= ================== 3 30 97.8 44 AGAAGAACCTCTTGCTCCCCCCTTAGCAAG # Left flank : TTGCGGCGGATTGCGAATTGGGTTGCTGCTGAAATTTCCGAGGCGATTGTGATTTGGGTGTCTTTAGCAGATTTGCAGGGGAAGGATTTAGAAACCTATTTATTTGATAGTTGGCTGCTGGCGGCAATTAAGAGGGTTGGGAAGGCTGAGGCGACGGCGGATATTAAGGATGATTTTGTAGCTGTGTTTAATGCCGAGGGGGTTTGGTTGGTGTTGGATGGGGCGGATGAGATGGCTGCGGGTGATGGTAATCCTTTGGCGGAAATTGAGCGGCAAATTAGGACGGGCGGCTGTGTTCAAAGGGCGCGGATCGTGCTAAGTTGTCGGCAGAATGTCTGGGATGCGATCGGCTCTGCGTTGGATACTTTTGACACTTATCGTACTCTGGAATTTTCCTATCCCGAACAAGTGGAAATGTTTATCGATAAGTGGTTTGGAACCCCCCCTAGCCCCCCCTTGGTAAGGGGGGGGACAAGAGTGGAAGAAGAGGTGACAGGAGA # Right flank : GGGGGCTGGGGGGGTGCTTTCTCAACAGCTACGGGAAGCATTAGCAGCATCGGGAAAAGAGCGAATTCGAGACTTAGTAAAAAATCCCCTGAGATGTTCGCTGCTGTGCGGCACTTGGCAATCCTTAGATGGGGATTTGCCGGATACTAAGGCTAAGCTTTATCAGCGATTTGTGACTACTTTGTATCAGTGGAAAAAACCGCACTTGAATTGGAGTCAGCAGCAGGATTTGAATGCGGCTTTGGGGAAATTGGCACTGGCTGGGATGTTAAATGAAACGGAGCGCTTTCAGTTGCGAGAAAGTGTGGGATATCGGGTGATGGGTGCATCGCAGTTTGAGTTGGCTTGTCGTTTGGGTTGGCTGAATTTAGTGGCGAGGGATGCGGAGACGCTGGAGGGGATTTATGCTTTTTACCATCCGACTTTTCAGGAATATTTTGCGGCGTTGGCGGTTGAGGATTGGCACTTTTTCTTGAATCATACCCCCCCAACCCCCCCTT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAAGAACCTCTTGCTCCCCCCTTAGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //