Array 1 163-3301 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSZ010000036.1 Rhabdothermincola sediminis strain SYSU G02662 Scaffold35_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 163 36 100.0 38 .................................... ACGAGCTCGAGAGACTCACCCCGCCGGCCCGCCGCACG 237 36 100.0 37 .................................... TCATCACCCTGCCGCCCGACAACGGTGTAGCGCCCGG 310 36 100.0 37 .................................... CTGATACCGCTGAGAGGATTGCACGAGCTACGGCAGC 383 36 100.0 39 .................................... AAGTCGACTCCTGCGATCGTGACGGCCAGCTGGCTCATC 458 36 100.0 38 .................................... CGGCTCATCAGCCGGGTCGTCAGGAAGGCCATCGCATG 532 36 100.0 36 .................................... GCCTCGGCCGAATCCACTTCGACTGTGTAGTCGCCG 604 36 100.0 37 .................................... TCCTGGGCTGGTTTCCTTGGTGCTAGCGCTTTCGGAA 677 36 100.0 37 .................................... CTAGTCGGGATCCGGATGGTGATCATCCGGTTGAGAG 750 36 100.0 38 .................................... TCGAGCAGCCTGCACCGATGCTCTCGCTGCTGCGAGAG 824 36 100.0 38 .................................... GGCCAGTGGTTGGCGTCGCAGCTACCCGGCTGGCTCGT 898 36 100.0 39 .................................... ATCGGTGTCTCTCCTTTGTTCGCTGGGGCCTCCCTGCGA 973 36 100.0 36 .................................... ATCGGCAAAACCGAAGCAGCGAAACGAACCCCAGAA 1045 36 100.0 38 .................................... GCGATAGGTGCTGCCCCATTGCTGGAGGTTTGGTTGGC 1119 36 100.0 38 .................................... CACCCGTCGGTTCCGCCGGGCGCTCTCCGCCGGTTGGC 1193 36 100.0 38 .................................... CTTTCATCCGGGGGGGCCGCCCGGCCCCCGACCACCAC 1267 36 100.0 37 .................................... GGTCGTGTTCGGCGGGGCGCGTGCGGGGCGCTCGGGC 1340 36 100.0 39 .................................... TCTCCCTCGTGGTAGAGGATGTTCACGGGAGTCATCTCG 1415 36 100.0 36 .................................... CCCGCCTGGTCGATGACGATGAGGCAGCTAACAGGG 1487 36 100.0 40 .................................... CTCGTGTCGGTGCGTCGCCGCTGGCATGACGCTCGCGGGG 1563 36 100.0 36 .................................... TCCTCGATGTCGCCGGGCTGGTGCTGATCGTCGCGG 1635 36 100.0 38 .................................... TCGTCTTTGTCGCTTCGACTGAGCACAGCGGTCTGCGG 1709 36 100.0 39 .................................... CCAGGTGGACGCGAGAGTGGTCTCGTAGGTGGTGCCGGC 1784 36 100.0 37 .................................... ACTCTCCGCCGTAAGTGTGCTATCCGTTAGTGGTGGT 1857 36 100.0 37 .................................... TGCTGGACGCGCTGCCGGCTGATGCCGGCTGCTGCCG 1930 36 100.0 38 .................................... AGGTTGAGATCGCAGGGCAGCGGCGGACGCTGCTTCGC 2004 36 100.0 39 .................................... TCGTCAAGACCGTCACCGGAACCACGACACTCACCAGCG 2079 36 100.0 39 .................................... AATCAGGCTGCCAACCACAGCCAGCGTGATAAGAAGCAG 2154 36 100.0 38 .................................... TCGGCCGCGTCGCTCCCTCCGCGCGAGCGCGGAACGAC 2228 36 100.0 40 .................................... CCTGTCAGATCCGATCCTGAGGTGTAGTGGATCGTGTCGC 2304 36 100.0 37 .................................... GAGGACCGGGCGAGACCGGCGTAGGTTGGCGCGACGG 2377 36 100.0 38 .................................... CTCTCCATATAATCCATACTTATCTTTCTCTTTCTCTC 2451 36 100.0 40 .................................... TTGCCCTTCTTGTCGACAACTGGCAAACCGACATAAGGCA 2527 36 100.0 37 .................................... GTTGCGGCGGCGATCGCAGCGAGGATAGCGGCAGGGG 2600 36 100.0 38 .................................... GCGCGTGCCTCCTCGACGATCATCCGCTCGACCTCGTG 2674 36 100.0 39 .................................... GGCCGCCCGCCCCGCACGCGGCCGCCCGCCCCGCACGCG 2749 36 100.0 38 .................................... CGGCTGCACGCCTGGTCACCACCTCGGTCGGGGACGGG 2823 36 100.0 37 .................................... CGTCGGGCCATGGTATCCCTCCTTGGTTTCCCCGCGA 2896 36 100.0 39 .................................... TCCATCATGTCTCCTCCTGTCGCTTTGAGCGCCGCCCGA 2971 36 100.0 40 .................................... TCGCCGACTGGCAACGGGAACACGTCGGACCACCCCCGGC 3047 36 100.0 37 .................................... GCCCTTTTTGTCCTCGCATCCTTTGAGGACCGGCGGT 3120 36 100.0 36 .................................... AGGTTCCATTGACACAAGAACACAATGGGGCCAGTC 3192 36 100.0 38 .................................... GGCCGGGGGTGTCGCGTCCCGTCAGGGCTGACCCACAC 3266 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 43 36 100.0 38 GTCACCCGCCGGTGAAACGGCGGGCTCCATTGCGGC # Left flank : GCATACAGTCAGCAGCCATCGGGGCCTCCTCGGATCGGCGTCTTCCAACAACACCGAGTCCAGCGAGGCCCCGACCCACACGGGTGGACCCCTACACGCCCCTCATCCCACGATCACGCGCAGTGCCACATTTGGAGGGAATCTTCGACCTGGCCGGCCTCAG # Right flank : GCTAACATCTTGACCCTTATCGCCAACAGTCTGAATTGTGGCTCTCCTGACCCTCGTGTGGGCGGGGTAGGCGTCGGGGTGCCCGTGGTTGCTGGGTGAGCGGGGGGCTGGGCGGGTCCGCGTGACGCGCACGGTGCGGGACCAGAGTTCGTGGTTCCTACACCGTGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCGCCGGTGAAACGGCGGGCTCCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.30,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 10134-12027 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSZ010000030.1 Rhabdothermincola sediminis strain SYSU G02662 Scaffold29_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 10134 37 100.0 42 ..................................... GCCAAGCCTTGGCCTTTCAACTCCTCCATATCGGAGTCGTTG 10213 37 100.0 36 ..................................... GTGCAATGCCGCCCGCAGGTCAACTCTCGGGTCGGA 10286 37 100.0 38 ..................................... CCGAGGTTGGTCACACGAACCGCTGTCGAGTCGTTCGG 10361 37 100.0 37 ..................................... GGCTAGCGACCTCAGCAGCTCACCATCGATCTCGGTT 10435 37 100.0 37 ..................................... CGCGGTTTGCTGCCACGGCCGGCGTGAACGCCTCGAC 10509 37 100.0 36 ..................................... ATGGCGGATGATGCCGGTTGGCTCTCGAGCCAGCCG 10582 37 100.0 36 ..................................... CGGATGGCGAGTCGACGATCAGCCATACCCACTTGT 10655 37 100.0 33 ..................................... CGTGATGATAGCGACCTCATAGTCATGCATCGT 10725 37 100.0 37 ..................................... CTGTCGGCGAGTAGCCATCATCTCCGTGAACCACAGC 10799 37 100.0 38 ..................................... GGGGACCTCATCCTACGCCACGGCCCCAAAGCCGCTGC 10874 37 100.0 39 ..................................... TCCAACACGTCGGGATCGGTCATCGGATCTCTAGCGGCC 10950 37 100.0 34 ..................................... ATGACCGCACGCAGCGTCCCCATGATGTCTGGGT 11021 37 100.0 40 ..................................... TTCACGCTGAGAGAGTTGAACTCTTCGAAGAAGTCCACCA 11098 37 100.0 38 ..................................... TTGATCAGGCCGGCGGCCTGCATTTTACGCATCTGCTC 11173 37 100.0 37 ..................................... ATCATGAGGTTTTCCCCCCTCATGATCGCGAAGAGGA 11247 37 100.0 37 ..................................... TCCAGGTCAGCTCCCGAATTATCTTTCTGAGCACCCA 11321 37 100.0 36 ..................................... TCCTGCTCGGTCGTCACGAATACGACATCCCCGCAC 11394 37 100.0 36 ..................................... TTCCTGTGCCGTTGGCGGCGAACACGAACGATGCGG 11467 37 100.0 42 ..................................... ATGCTGAGCGACTCGCCGGATGACGACCGCGTCCAGATCCGC 11546 37 100.0 40 ..................................... CCGATCCGGCGACGAGATCGAGGTTTCCGACGAAAGCGTA 11623 37 100.0 38 ..................................... GCCAGGGACAAGCCCGGCGCCACCCGGTTGTTATCCGG 11698 37 100.0 35 ..................................... GCCCGGCGCACGTCCACGTCCACCGCGTCCATCGT 11770 37 100.0 36 ..................................... ACGCGACCGACTCGCGGACCGCCCAAGACGGATCAT 11843 37 100.0 34 ..................................... GCAGTCCACCGGGTGAGTCTGTATAGAGCGGCCC 11914 37 100.0 40 ..................................... AGGCGCGGCACAGCCCCCTGTCACTTAGGTATCTGGTCAG 11991 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 26 37 100.0 37 GTCAGCACCCAACGCCCGACCCAAAGGGCATTGAAAC # Left flank : GACTACCAGCCGATTCTCTGGAAGTGATCGCCGATGGTCTGGTTGATCACCTACGACATCGCCGATGATCGTCGGCGGGAAGCCGTCGCTGCGCTGCTTGCCGCATGGGGTGCCCGCGTGCAGTACAGCGTCTTCGAGTGCGAGTTCCCCGATGCGACGGTGGCCGCCGACATCCTGCACAGGGTCGAGGAGCTCATCGATGCCCTCGACGACCAGGTCCGGGTCTACCGGCTCCCGGGTGAGGGCGCCGGCGGGGTTCAGATCATGGGTCGCCGCCGCCTCGAGGAGCGGGAGGACTTCTGGATCGTGTAAGGATCCGTGACCGGAGGAGGCCTGCGAGCGTGGATCTGGGGCCGGTTCGCGCCGGCGCGTAAGTGCTGGTCAGAGTGGGTGGAGGCCCGTTCCGGGCCCGTGGCGGTCGCCGTCGTTCACCCTCCGACGGCACGGTTCGCGATCCAGCCCGCGAAACCGCAGGTCAGAGGGGGTGAGAATCGACTAGG # Right flank : GCGGCCCGCTCGCGGACGTCCCAGTCCGGAGACTCGTCGAGACTGCGCGGTTTCATGGGGTGAGGGTGGCTGGTCTCGGTGGTGATGATCGTATGGCGGGGCAGGCGAGGATGCCTCGGGCTTCGAAGTTGGCGTGGTTGGTGAACCCGTACGCGACGCGGCGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCACCCAACGCCCGACCCAAAGGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 1 163-639 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSZ010000041.1 Rhabdothermincola sediminis strain SYSU G02662 Scaffold40_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 163 36 100.0 38 .................................... CTCGTCGATGCGGCCGGCTCCGAGGTAGACGATCGCCG 237 36 100.0 37 .................................... AACGCGGCCGGTGACGATGACACGGTTTCCAGCCCGG 310 36 100.0 36 .................................... GTCCTACCGTTGGCATGCCGCCTGGCATCGGGAGAC 382 36 100.0 38 .................................... GATGGCTAAGAGTCGTGGCCGGGGTCGGGTAGCAGCGG 456 36 100.0 39 .................................... GCTGACCGGCCGATCCTGACCCGCGCATCCGACACAGAC 531 36 100.0 37 .................................... CTTTCTCGGGGGCCGCCGATCGGCCCCCCTCCAACCA 604 36 86.1 0 .............................CA.ACC. | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 98.0 38 GTCACCCGCCGGTGAAACGGCGGGCTCCATTGCGGC # Left flank : TACGCCGCGTCGCGTACGGGTTCACCAACCACGCCAACTTCGAAGCCCGAGGCATCCTCGCCTGCCCCGCCATACGATCATCACCACCGAGACCAGCCACCCTCACCCCATGAAACCGCGCAGTCTCGAGAACTCAGCTGTTGACCCGCGACTCTTGACGCAG # Right flank : CACGCGAAGGGCCGGTTTGGTCGCATCAGACTCAGACGATGTCCACACCTCCAGTTGGAAGATCGGGAGGAGCGCCAAGAAATCTGAAGCAGGAGGTACCCCTCCCCCCCGGATCCCCCAGATCCACGATCATCACCCGATCCACGAATGGCTCGATCAGGTCCTCGAGATCCCAGATCATCCGGATGCGTTCCTGTTCCGACAGGTCGCAGACGAACACGGAGTACTGCATGCGGCGGCCGTAACCGTTGAGCGTGTTGAACACCCGTGTCCGTCGACCATCATCGGTGATGTCATACGCGACGAGGTGCCGTCGCCGACCGAAGGTCGCGACTCGTCTTGTCAACTGCCACCTACCTGATCAATCAGCGTGCTCCGTAAACCACCCCCGCCGTGACCCCGGCCCCTGACACCCGCTCCGATCCAGGTCATCGCGTCATAAAGCCCGTGTATTCGGGAACCTCGCCGGTCAGGTGGGCTGCCAGCAGCCGGGACTGAAC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCGCCGGTGAAACGGCGGGCTCCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.30,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 537-721 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFSZ010000047.1 Rhabdothermincola sediminis strain SYSU G02662 Scaffold46_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 537 36 100.0 39 .................................... GGACGCCGCTGTCGGACGCGATCGGCGAGCTCGAGGACG 612 36 100.0 38 .................................... TATAACGACGGCGGGTCTGGGCTTTCGATGTTCAGCGA 686 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 3 36 100.0 39 GTCACCCGCCGGTGAAACGGCGGGCTCCATTGCGGC # Left flank : GGCGTCTTCCAACAACACCGAGTCCAGCGAGGCCCCGACCCACACGGGTGGACCCCTACACGCCCCTCATCCCACGATCACGCGCAGTGCCTCTCTTTCACGAGCCCGAAGCCCAGCCGGAAACCGTCACTGCCGGGGCCCCTCTCCCGAGGCCACCCTACGTGGCCACCCACTCAAGCCGAGCGGGCAACCTCAGTGATACAAGCCGCCAAACCCTGGGAGAGCCAACCCAAGGTGGCAGGCGATTCACGAGCCACCCCGCCCGACGACCTCCCGGACGCTACGAGGCAAACCCCGCCGCGACCGGTCCCCTCATACAAGTCGGCGGTTCACTGCGAGCGGTCCACTGAGCAGTCCGGCACGGGTGACCGCTCGCTTGCTGGTCAGGGGTCGTTTGCATTGCAATTTGACCACTGAACGGCTATCATTTTCTCGTCACTCGTCGACCGCTCGCAAGAGTCGGCGAAGGAGCTGTTCACCGCAGCCTTTCGAGGGGAGCG # Right flank : CAACATTTGGGAGACTGCGCGGTTTCATGGGGTGAGGGTGGCTGGTCTCGGTGGTGATGATCGTATGGCGGGGCAGGCGAGGATGCCTCGGGCTTCGAAGTTGGCGTGGTTGGTGAACCCGTACGCGACGCGGCGTA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCGCCGGTGAAACGGCGGGCTCCATTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.30,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //