Array 1 431883-433008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWQG01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN024773 CFSAN024773_contig0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 431883 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 431944 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 432005 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 432066 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 432127 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 432188 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 432249 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 432310 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 432371 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 432432 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 432493 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 432554 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 432615 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 432676 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 432737 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 432798 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 432859 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 432920 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 432981 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 449267-450991 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWQG01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN024773 CFSAN024773_contig0001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 449267 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 449328 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 449389 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 449450 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 449511 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 449578 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 449639 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 449700 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 449761 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 449822 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 449883 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 449944 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 450005 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 450066 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 450127 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 450188 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 450249 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 450310 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 450371 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 450432 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 450535 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 450596 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 450657 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 450718 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 450779 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 450840 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 450901 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 450962 29 96.6 0 A............................ | A [450988] ========== ====== ====== ====== ============================= ========================================================================== ================== 28 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //