Array 1 864019-864581 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134288.1 Streptococcus milleri strain NCTC11169 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 864019 36 100.0 30 .................................... TTGCTAAGTCGCTTGATAGCTGGTTGATGA 864085 36 100.0 30 .................................... TTTCTATTTGTTTCATGGCTTCACTAGCCC 864151 36 100.0 30 .................................... GCCTCAATCCACGGATAGAGGTTGAAATGG 864217 36 100.0 30 .................................... AAACTTTTTGGGTGAATTTCGGGTGATAAA 864283 36 100.0 30 .................................... CTTTTGACCAAGACTTATCGATCTCTTTCT 864349 36 100.0 30 .................................... CTATTTTAATTAACAACGGTGACTTATCTC 864415 36 100.0 30 .................................... CGCGTCCAGGACGCTCAATCAAACCCTGCT 864481 36 100.0 29 .................................... TAATTTTCTTAGGATTTATGCCATATTCT 864546 36 97.2 0 ................................A... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ACGATTACTTAAGTTATTCCTCATTTGTAAAATGTTGTGAGCAATTACAGAGAATGGCCAACAATTACAGTAATTTTAGTGTCATTATTTTCCCGTCAAATGAAGGCTATCTTTATTTGAATCGCGAGAATATGGAATACGTCAATATTGTTTCTGATTTGGTTGAACATTTTTATGAATTTTCTTTTATGTATGAAAGGTTTAGTGGTCAATATCCTACTAACGACGTACCTACAGAAGATGATTTCATCGTCTCTTTGCAAAAGATTTCACCATATTTATTTAGTAAAGACGTGACACATATGAGTTTATCTATTCAAGATATAGTAACCTTGAAAATTATGAACAGTTTATACCATTATAACAAGAAAATTCATTTTGCTTATAATCCACCTACTCAATTATTAATTAATTTTTTAAAAAATTAAGATTGACAAGCTCATCAAAGGACTTTATAATCAATGTAAGGGTACAAAAATCAAAAAATTTTTTAATTTGAG # Right flank : CTACATTAGGAATTGTTTGATGTAAAAGAATTGTAATCTAATAGTTATCTGAGTAATACATTAGCGGAATTGTAATTTAGGCTGAAATGGTTTATAATGAAAAGTAGCAAGTATATTAGGAGGCCGTCTAATGGAGAGAAAAATTAAAAAATCGGTAGTTGCGACCGGTTTAGCTGCAACCACTATTATTTCAGGCAGTTTATCACATCAAGTAAATGCCGAAGAAGTAAAAACACAATCTACTGAGCCAAAGACATCTGAAAAAATCACCAAACCAGTTACAGAAACAGATGTTCAATCAGCAAAGATGCAAGCCGATGCTGCAAAGGTTCAGACAGATGCTCAGCAAAAAGTTGTAGAGCAAGTTAAAGGGGATGTAAATACTTCAAAGGACGCGGTAGCAGATAGCGAAAAAGCTGTTGCAAATGCTGAGGCAGAAAAGAAAGAAGCAACTCCAGAAGTTATTGAAACCGCAAAAGAAGAAGTGGCGACATCAGAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1231944-1229465 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134288.1 Streptococcus milleri strain NCTC11169 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1231943 36 100.0 30 .................................... GATCTCGTAGCCCTCCTAGAAAAAGGTAAT 1231877 36 100.0 30 .................................... AATAAAACGTTTGTCAAATATATCGCCCAT 1231811 36 100.0 30 .................................... TTTTCTCACTCTTTTGAATCAAAAAAGCTA 1231745 36 100.0 30 .................................... CGTCGAAGTTGGCGAAGACGGCCATGCCGA 1231679 36 100.0 30 .................................... GATTGTTGAGGGATATGGATCACGAACAAA 1231613 36 100.0 30 .................................... TTTCATGTTGGTTTGTGTAGCCCCTTTTCA 1231547 36 100.0 30 .................................... AAATGAAATTCGTTTGATTGTTGAGGGGTA 1231481 36 100.0 30 .................................... GTCAATATTTTCAAATTCTCTGGCAATGTT 1231415 36 100.0 30 .................................... ATTGCAAAACGCCTCTTAGAAGGCACGTTA 1231349 36 100.0 30 .................................... CTCACTTGCTTAAGCTGCTAACTCAACAAG 1231283 36 100.0 30 .................................... GAAAGAATTGATTATTGATAAAATCAAGAA 1231217 36 100.0 30 .................................... TATCCACTCCGCCACAAACTGCGGAATGAC 1231151 36 100.0 30 .................................... AGGAATATATATGACGCAAAAAGGTCTATT 1231085 36 100.0 30 .................................... TGGAAATTCTGACGACTTAGAGCATGAATC 1231019 36 100.0 30 .................................... ATTTTGATTGATATAGAAAAGGAAATAACA 1230953 36 100.0 30 .................................... TTAGCGATTTCCAGCTGAAATTCATTCATA 1230887 36 100.0 30 .................................... ATTTTCAATACTGTTAAATTTAAAAATAGT 1230821 36 100.0 30 .................................... GCAGGTTCACTTAGAATTGAGAACAATTGG 1230755 36 100.0 30 .................................... TCTTGAGTTGTTAAATCGTCAAGGTAGCGA 1230689 36 100.0 30 .................................... GTGGATTCGTTTTAATCCGTTAGATGGTAA 1230623 36 100.0 30 .................................... ACTGGTGGATGGCAAAGAAATGCTTCCTGA 1230557 36 100.0 30 .................................... TTCAATTCTTCAAGTTCCGAACGAGTAAAG 1230491 36 100.0 30 .................................... GCAAGGGGATAAAGTCACCTATTTCTGGTA 1230425 36 100.0 30 .................................... CTTTAAGTTCCACGCCGACAATTTTTAGAT 1230359 36 100.0 30 .................................... TCACCTGTTTTTAAAGCCACCACATAGGTT 1230293 36 100.0 30 .................................... AGCGACAGGCAAGCTCTTGTCACTCAACGT 1230227 36 100.0 30 .................................... TACAGTTAGACTTGTTGCTAGCTAAGAATA 1230161 36 100.0 31 .................................... CACTTTTTTAGAAGTGATGAAGGTGAATGAA 1230094 36 100.0 30 .................................... ACGAAAATGTCTGCTGATTCCTCTTTCGGA 1230028 36 100.0 30 .................................... AAAATAGCTTGGAATAATAACGACTAGAAT 1229962 36 100.0 30 .................................... GCTATATACTCATATTTCGAGCAACTAGAC 1229896 36 100.0 30 .................................... CTATTTTGCAGACGCCTATCTAAAAATTGT 1229830 36 100.0 30 .................................... GAAACTTTCAATTAAATCAAGGACTTCAAG 1229764 36 100.0 30 .................................... TTTGAGACAGTCGCTAAATTTACAAATTAT 1229698 36 100.0 30 .................................... GTGATGTCGGAACAGCTCTAGACCCTTATC 1229632 36 100.0 30 .................................... CTTACCACTGGAAGGTCTATCTGTAGATGA 1229566 36 100.0 30 .................................... TTCAAAGGAGCGATTCGACTGACAGTCAAG 1229500 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 38 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACAGTTGAATGAAAAGCCTGAAGTGAAATCTATGTTAGAAAAATTAGTTGCAACTATTACAGAACTAATTGCTTTTGAATGTTTAGAAAACGAGCTGGATTTAGAGTATGATGAAATAACAATTTTGGAATTGATTGATGCTTTAGGTGTAAAAATTGAAACACTAAGTGACACTGTTTTTGAGAAAAGTTTAGAGATTGTTCAGGTGTTTAAATATCTTTCTAAAAAGAAACTGCTTGTCTTTGTGAATGTATCATGTTATCTGTCTGAACATGAACTAGCTAAATTGGTAGAATATATTCAACTTCATAATATAAATGTACTGTTTGTTGAACCAAGAAAAGTATACGACTTCCCTCAATATGTAGTGGATGAGGACTATTTCTTATCTTGTGAGAATATGATATAATATTAGTAAATATAAGGAATCATTTGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTACGAAATTTCGAGACAAAAATTGGTCCACGAG # Right flank : ACAATACATTTTAATCATAGGGCTTGCAAATTTTTCCAATCGTGTTATAATACTTTTTAGAGACATATCACCTACAGGAAATCTTTCAGAGAGCGTGTGGAGCTGGGAATCACGCAGAGGATGTAGCTGGGACTACTCGATTTATTTTTATGCAAACATAAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAAACTTTTTTGTTGTACATGAATGAAGGTGGAACCACGTTGCGACGTCCTTTTAGGATTGCCGCTTTTTATTTTGTCGGAAGGAGGAAGAGTTATGCTCTATATGATTGGTGGATCGCCTTGCAGTGGGAAGTCAACAATTGCCTCCCTTCTTACTCAGCAGTATGGGCTGCTTCATATCAAGTTAGATGATTTGACAGACCAGATGATGGATCAAGCAAGAGCGAACGCAAAGCCGATTTCCCTTCTGAGACAGGACAGAAGTCCGGATCAAATCTGGCTGAGACATCCAGAGGAGATGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //