Array 1 222548-224497 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYRH01000002.1 Streptococcus agalactiae strain GCH55 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 222548 36 100.0 30 .................................... AATTATTGTTTAAAAAATCTCAAGACAAGG 222614 36 100.0 30 .................................... ATCAGTTTGCAGTGGTTTACCTCCGACTTC 222680 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 222746 36 100.0 30 .................................... AAGGGTGTTAGATGATAATACCTTTTTTAA 222812 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 222878 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 222944 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 223010 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 223076 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 223142 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 223208 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 223274 36 100.0 30 .................................... TAATGTCTTTTCCTAGAATGTACATTTCTA 223340 36 100.0 30 .................................... ATTACTTTCAAGATGTCTATGACTATATGC 223406 36 100.0 30 .................................... TATTTCATCATAGAAAATCCTGCTAGTGGT 223472 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 223538 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 223604 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 223670 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 223736 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 223802 36 100.0 30 .................................... AACTGTGTGATACTTTTCGTTTTTTTCTTT 223868 36 100.0 30 .................................... TTTTATAAGTGATAGAGTGTGCAACACCGT 223934 36 100.0 30 .................................... TTTTATAAGTGATAGAGTGTGCAACACCGT 224000 36 100.0 30 .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 224066 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 224132 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 224199 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 224265 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 224330 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 224396 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 224462 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 30 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //