Array 1 452394-450577 **** Predicted by CRISPRDetect 2.4 *** >NZ_JATH01000008.1 Streptococcus uberis S6261 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 452393 36 100.0 30 .................................... ACAGAACCGTGTCCACCGGTGAAGAAGCTT 452327 36 100.0 30 .................................... AATAAAGCAGTAACTAATGCTGCGGACCCT 452261 36 100.0 30 .................................... CTAAAGCTGGTTTCTTCGTTACATTCACGC 452195 36 100.0 30 .................................... AGGTTCACGTTTGGATCCTTAATAGCGTCA 452129 36 100.0 30 .................................... TCACCGTTTAGCACACCCGAAATTGAACCT 452063 36 100.0 30 .................................... AAAACCATTCTTGCCTGTCTCACGACCGTC 451997 36 100.0 30 .................................... AAACTTCTTGAGGATGTAAAGCTTTATTGC 451931 36 100.0 30 .................................... AGGACCAAGCAATAATTGTTAAAAGCTTAA 451865 36 100.0 30 .................................... GTTGACCTTAGTAGGCTTGCATGGAATTGA 451799 36 100.0 30 .................................... TGATTTTAGGTTAAATGGTTCATATGCATG 451733 36 100.0 30 .................................... AGTCCCATCAATTGAGACCATGTCAAGCTC 451667 36 100.0 30 .................................... AAAATCATTTTATATATAAGTCATTTGCTA 451601 36 100.0 30 .................................... ACCTTTTAAGATGCGTTCTGCATCGTCACA 451535 36 100.0 30 .................................... TCTGTAGCATCCATATATTCTGCTACTGCA 451469 36 100.0 30 .................................... AAAAACGATTGAATGGTACAAAGATGAGGA 451403 36 100.0 30 .................................... CCAGTGATACCTATTTCTTTTTGTACTGCG 451337 36 100.0 30 .................................... TGTGAACGCTGTAAGCCTTTTGACAGTACA 451271 36 100.0 30 .................................... TAGGATTGAAACGACAAAAAATAGGGGGGA 451205 36 100.0 30 .................................... CTCTGCTCAAAAAGGAAAATCCGACACATT 451139 36 100.0 30 .................................... TCTATAAGTGGCTGGAAAGCATGGGTAATG 451073 36 100.0 30 .................................... TATTTGCATTTTAAAAAATGACCATTTGTG 451007 36 100.0 30 .................................... CCAAGCAAACAAATTTCAAGCTTTGTACTT 450941 36 100.0 30 .................................... TAAGTCAGCGAAACTTGTTGGCAATGTCCA 450875 36 100.0 30 .................................... CCATATTAGCATTACCTTGAGACGATACCG 450809 36 100.0 30 .................................... TTAGTATTAACGACAGCAGACTCACGACCA 450743 36 100.0 30 .................................... TGGGTGGATTACGATTGACGAAGTTCCCGA 450677 36 100.0 30 .................................... AAGATACCTTTGATAAAATTACTCGTTCGT 450611 35 91.7 0 ....................-.............TT | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : TAAGAATTTGGATGATTATCTAAGTCATAAACAATTTATTGAGATATGTCAGTTTTTAAACGATATATGTCAAAAATATTCTCATTTTTTCTGTATTGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTATCCGACTAATGATTATCCAAACGAAGACCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGTTTGTCTGTAAGAGATATGGTAACTATCAAAATTTTAAACATGCTTTATCATTTTAATGATAAAGTAACTTTTGAAATTCCACATGTGAATTCGATGGAAATCAAATACCTAATTAATAATGATTGACTTTAAATCAGCCTCGAATTATAATCAAAAAGAGAGTATAAAAATTTAATTTGAG # Right flank : AGTATTCTTAAGTAGGTTTGGTAACTGTTGATTTTTAAATAATTCCATATAACACCAAGAAAACAGACACTTTCTAGAGTGTCTGTTTTTTCTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAGTCTATTGTTTAAAATGTATAATTATTAATAAAATAGTCTTAAAAATGTATGTCGAGAAATACGTTTTCAGGGTTTTTCTTATTTTTTTGATGCTTTTAACCCTATTAAAATAGGCTTTTATAGTAATTAGATATTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //