Array 1 125304-125718 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NXPN01000004.1 Listeria monocytogenes strain CFSAN049206 CFSAN049206_contig_0000004, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	=============================	====================================	==================
    125304	    29	 100.0	    36	.............................	CATGATTTCTTTGTCGTTCATAATAACGTATTGATT	
    125369	    29	 100.0	    35	.............................	GTTTTAAAAGTACCGCAATTTATTGCTGATTGGAT 	
    125433	    29	 100.0	    35	.............................	GGAGGAACAGCGACCGGTTTCGGTTCAGACATTAT 	
    125497	    29	  96.6	    35	..........T..................	TATTTTGAAATATCTAAAGCTATCTCACTGTTTAG 	
    125561	    29	 100.0	    36	.............................	GACAATGTATTATCAATTGAAGTGCTTGTAGAAACA	
    125626	    29	 100.0	    35	.............................	TGTAGTCATCAACTTGTTCAAAGTATTTCACTATA 	
    125690	    29	  82.8	     0	......A........CA.A....A.....	|                                   	
==========	======	======	======	=============================	====================================	==================
         7	    29	  97.1	    36	GTTTTAGTTACTTATTGTGAAATGTAAAT	                                    	       

# Left flank :   GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTAAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCGGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGATTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGATCTTGAGTAGCGTGAAAAACACCGGGGATCGACAGAAAGTTGTAAGTGGTTGCGGGAAGAGGGACTTGGCGATATTTGCTTGGGGAAACCTTCCGGATAAGAGAGGATTTTTGCTATTTTTAGGTAGGTCGACAGAAAGGAGCATTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG
# Right flank :  TCCCTTCATATACACCATCCATCAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATTATTAAACTCTTTCAAAACATCCGCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCTTCTGTTTCTTTCAAGTTTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGTTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATATGCGCCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTACTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTGTTTTTCACTAGTTTTA

# Questionable array : NO	 Score: 6.11
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTTACTTATTGTGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:79.31%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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