Array 1 428075-428224 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOQ01000003.1 Salmonella enterica subsp. enterica serovar Muenchen strain 157 NODE_3_length_616209_cov_27.0114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 428075 29 100.0 32 ............................. ACGATGGTCATGCGGCAGATTTGGCTCCCTTT 428136 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 428197 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATGACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 444361-445550 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOQ01000003.1 Salmonella enterica subsp. enterica serovar Muenchen strain 157 NODE_3_length_616209_cov_27.0114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 444361 29 100.0 32 ............................. TTGGCAGCGTTAACAATCCAACCCCTGAGAAC 444422 29 100.0 32 ............................. GCAACACAGGGTTTAACCGGTTCCCTGGCGCT 444483 29 100.0 32 ............................. GATGCTAACCACTATTTCATCCGCCTCGACGA 444544 29 100.0 32 ............................. GTGCGCAGGATATTCTCGCGGACTGCGTAGCG 444605 29 100.0 32 ............................. CCTGTGACCTGTTCGATGAAGTTGTCGCGCAG 444666 29 100.0 32 ............................. CAGGCCGCGCAGTGGAAAATGAGCCCGTTTGC 444727 29 100.0 32 ............................. ATTGATCCAATTAACGTAGCTGCAATGTTTGT 444788 29 100.0 32 ............................. GCCGCGCATGACATCGAAAAAATGTGGGAAAA 444849 29 100.0 32 ............................. GCGTCCGTGTGATCACCGGGTGGGTGATGAAC 444910 29 100.0 32 ............................. TTCAGCGAGCCATAAAACCGCAGTTTGTTTGC 444971 29 100.0 32 ............................. TCACTTCAATAAGTCCTGGCGGTAGCTCGGGG 445032 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 445093 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 445154 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 445216 29 100.0 32 ............................. TGAGCACTGTTATTCGTTATAGCGGGTTTCGG 445277 29 100.0 32 ............................. TTACTGAAACGGATAAAAAATAATCAGGGGGG 445338 29 100.0 32 ............................. GGTGAGCTGGCGTCATTGCCCGCCCCGGCGAT 445399 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 445460 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 445521 29 96.6 0 ............T................ | A [445548] ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 142781-143724 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDOQ01000002.1 Salmonella enterica subsp. enterica serovar Muenchen strain 157 NODE_2_length_652405_cov_25.4087, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 142781 29 100.0 32 ............................. TAGGTAAACGTAAATCCCGCATCTACTGGCGC 142842 29 100.0 32 ............................. TTCGTGACTGGCGTAGTTGAATGCAAACCGGA 142903 29 100.0 32 ............................. CGGAATTGCTGCGAGCTCACAGATATCCGCTT 142964 29 100.0 32 ............................. GCCGTTTTGATTTCAGGCTGGGAACGGGTGAG 143025 29 100.0 32 ............................. TTTACGGCAATTGCCTTTATCAGCTGAAGATT 143086 29 100.0 32 ............................. GCACCTGGTCACTCTCACCCATACTGAACTCC 143147 29 100.0 32 ............................. GGCGTATCGATGATTGTGGCGTTCGTTAAGTT 143208 29 100.0 32 ............................. ATTATTCATGATGTGGTGTTAAATCAGATTAG 143269 29 100.0 32 ............................. TTACGTAATGGCGGCGGTTATTATGGTGTCCG 143330 29 100.0 32 ............................. ACAGTCACCTTTAATTAATTCGCCATGTGTAA 143391 29 100.0 32 ............................. GGCAACGACATAGAAGCCTTTATAAAGTCCGT 143452 29 96.6 32 ............................C AGTAACGTTTAATATTTAAATACATGGCTAGC 143513 29 100.0 32 ............................. CCACGCAAATCAAAACTGGAACAGGCTAAAAA 143574 29 100.0 32 ............................. GGCCGTTCATCCACGAGGTGTCAGGGGCGTTT 143635 29 96.6 32 ............T................ ATGTAAATATGCGTACGTGCATATAGCACCGG 143696 29 93.1 0 ........T...T................ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCCTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGACTTTCTGGAACAAATATATAGATTTAGT # Right flank : GCTTTGTAAAAATCTTATGACGGTTTCAAATGGCATCCCTGTGCAAATGAGTCCCGTAAAAGTTACCGTGGAGCTGCTTGCTGATAACCTGCGACACAGCCTTCTGGGCCCGGCTTTTTTTACTGTTCCTCAGTTGCTGACGGAATATACCGGAAGCACGGTTTTTGCCGGGAAGTCACTGACGGTTGATGGTTGTCTCACAGCAGTCCGTCCGGGAAGTTCGCTGCAGTGTCTGGATAAATCAGCCTGAAGGGCCGGAGACAGAGTTATACAGCCTACATCCCAATAGTGTGACGACAGGACGTTTCCCCGGCAGTCATGCAGTCCCCTGCGGATTGTCCGTAGGGGGGGGGATTATCGTTACCTGGAGAACATGGACGAATCTGACCTTTATATACTGTCGGAGGATGAACTGGATTATTTTAACTCATCGGCAGACCACCGTCTGGCTGAGCTGACGATGAACCGTCTGTATGACAAAGTGCCGGCCAGCGTGTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //