Array 1 318412-320692 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076082.1 Limosilactobacillus fermentum strain 9-4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 318412 36 100.0 30 .................................... TTATCCCATCGACATTTAACCATTGGGCTC 318478 36 100.0 30 .................................... TTGGTGAAAGTTGCTTCGTCTACGGTGGTA 318544 36 100.0 30 .................................... ATTCAATCTTCCGTCAGTCGTCGCTATATC 318610 36 100.0 30 .................................... TTTTGATTCGTCTTGTTAGTTCCTTGACTG 318676 36 100.0 30 .................................... TGGCTTTACCGACACGGACGAAGCGACTTT 318742 36 100.0 30 .................................... TTCTTCTTTCTCCCCTTTATCATTGAGTTG 318808 36 100.0 30 .................................... CCTAACCAGCTTCAAGTACAGCTTTCCGCA 318874 36 100.0 30 .................................... CAGCGTATGCCGAGCTCGATACCGTCCCCA 318940 36 100.0 30 .................................... TGCTGACGCAGCGGGCGACATCAACAAGCT 319006 36 100.0 30 .................................... TCTCGACCGGTCCAAAACGCTAAATCGTTG 319072 36 100.0 30 .................................... GAGAGCAGACTGAGAAGCTCAAAAGCTACT 319138 36 100.0 30 .................................... CTCACCCGAGATTACAGCCGGGAACAAATA 319204 36 100.0 30 .................................... ACCGAACGAAAAGAGAGATTCAAGCTAAAT 319270 36 100.0 30 .................................... GCGCTTCTCGTACTTAAGCATACTTAGGTA 319336 36 100.0 30 .................................... ACACCTGTTTACAGATTATTTGAAGAAAAC 319402 36 100.0 30 .................................... TTTAGTGTGTTCGGATCGATCGAGATGTAC 319468 36 100.0 30 .................................... TTACCATTTGTTCTCCTTAAACAATTTCTG 319534 36 100.0 30 .................................... ACGAATGAGCATACTACCACCAAACAAGCC 319600 36 100.0 30 .................................... GCAAGATGTCGGCGTTTACAGTTGATGCTA 319666 36 100.0 30 .................................... CCATCATCACCACCTGGATCGCCCGTTTCT 319732 36 100.0 30 .................................... ATCGGTTAGGAAGCCGGAAAAGGAATGGTA 319798 36 100.0 30 .................................... ATCGGTTAGGAAGCCGGAAAAGGAATGGTA 319864 36 100.0 31 .................................... TAGCATATCAGGGATCAACTCTTCCACACCG 319931 36 100.0 30 .................................... GAAGCTGATCAGCTAAACGAGGGAGAGGAG 319997 36 100.0 30 .................................... ACGACCTTTGTTGATAACCGCGATCCTTAT 320063 36 100.0 30 .................................... AGAAAGGGCGCGGATTCCTAAAGAGGTACT 320129 36 100.0 30 .................................... ACACTAGAATCACCGTTTAAAGTACTTAGA 320195 36 100.0 30 .................................... TTTGCATAGAAAGGAAAATTAAAAATGGCA 320261 36 100.0 30 .................................... CCATTAACTGCCCCATCGGTTGTGCCATAC 320327 36 100.0 30 .................................... TCGTCGGTAAGGGCCACTCCTATGACAACG 320393 36 100.0 30 .................................... TTTAGAGTGTCAAACCGGCTAACTGCGCCA 320459 36 100.0 30 .................................... TATGCGACCAAGACAGACTTAAACGACTAC 320525 36 100.0 30 .................................... TCACTAAGCGTTGCCCCAGATCCACCTGAT 320591 36 100.0 31 .................................... TGTGTGTTCTTGTCAGTAAAAACACCATCAG 320658 35 86.1 0 ..........................-..TT..A.T | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 99.6 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAACTTGATAGTTACCAAACGTCACTCGATAAGATGATTGTCAAAAATCTTAGTATCGAGAAGCGAGATAGGATGAATGACCTTGCTCGTGAGATTTACTCAGAAATGCAAGATTCCCTGTTCGAATTCGATTTGCCATTGGAAGTCAGATATGACGAAAGTCTTTTGAGATTATACAAATATGCGAAAATCAAGTATTTGACGCAATTAATAAGGCAACCTTATGGTATAATTGAGACCGATCTAAAATTACATCTCGAATTAAAGGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTACCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTAGAATTCTCAGAAAAGAGAGAAACTTTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTAATGAGAAAACAACG # Right flank : TTATAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCTTTTTTTGAAGTAATGAGGGAAAGGTAAATGTTTCCACTTTGGTAATCTGACGGGAGCTTTGGCGTGCGATGTGCTAGGATAAGGCCAAAATGAGGCTCTACACTAAATCTTGTTGATGGATTACCATAGTGGTGATTCGTTGACAGGATTTTTTGGTTTTGAGGGCACAAAAAAAGGCCCCACCGGCCTTAAAATTCTGATCATTAACTACCACGCAAATTCCAGAAAGTAAGAGGTGTGACCTTATGACTGATTATATTAAAAATATCCTTCAAATTAAAGACCCCAATCTTCATTTCACAGACGTTGTCTTTGAAAATAATGACGGACGGGAGACGCAGGTCTTCATTGGGACGGTCTCACTTAAATTGGATCGGTGCCCACATTGCGGCTTTGAGGATACCCTCATCAAGAATGGTCATTCTTACCAAACCATTAAGTACCTCTCAATTAACGAAAGTTG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 556308-555629 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP076082.1 Limosilactobacillus fermentum strain 9-4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 556307 36 100.0 34 .................................... CTACAACGACGGCGATGATAACCGTTCCGAAGAA 556237 36 100.0 36 .................................... TTTGAATTATCTTTCATAATAGCTTTCCTCTTTCCT 556165 36 100.0 33 .................................... TTTTATCTAAAAAAATACCGCCTACGATCATAT 556096 36 100.0 35 .................................... TAAAATTTCCAATTGCTGGTTGCGGGCTTGTAAGT 556025 36 100.0 34 .................................... ACTTGTGTTAATGATAAAGTTTGATTGCATGATT 555955 36 100.0 38 .................................... AATTTTTTTGTTGATCATAGTATTCTCCTTTAATTTGT 555881 36 100.0 37 .................................... TAAAGTCAACACTTTTTCTTAAAAATCTGATTTATTA 555808 36 100.0 37 .................................... GTTAGGCGCCGTGACAGCTCCCGTTCTCGTTGATCTC 555735 36 100.0 35 .................................... GTTTCTTCGTTGATATCTTCGTCGTATCCCCAGCC 555664 36 72.2 0 .....G....A..T....TT......G....T.GTA | ========== ====== ====== ====== ==================================== ====================================== ================== 10 36 97.2 36 GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Left flank : AAACAGTTTTACGAACGGAATTATGCACCAACCTTCCTTTCTGCTTTTCCCTCTAAATACATTCAGGGGAATTACAAAGCACCCATATACCTCGGAGCAGGGAGCGGTCTATGGAGCAAAGTTGACCATCAACATGTTGATATTGAAGGGATTCGACGTCAAACTCCAAGAAAAATGAAGATGAAGTTTAATGGTGCCCTGAAGCTAACCAAGAGCCGGATAGTACGCTATAAGACTCCTAAAAAGGATGGCTCATTTGAACGACACGTTCTCATTATTAATAACGAAAATCTCTACGAAATGGGAAAATGTGGGTTCAAAATCAAGGAATTGTAATTTCAATTCTGAACTAGTTAAGTTATAATATATAGAGTTAATATTCGAAATTGACAATGTCCAGAAAAAGGGCTAGAGAGGCTTGAATGAGCACCTACCTGGTCGAATTGTGGGCATCAAAATGTCAAGTTATCCTTGATTTAGCAAGAAAGTTAGCAGGATCG # Right flank : AAAAGCGAGAGCGTGTATCGAAATCCTTAGATTTCAATACACGCTCTCTTTAGATTTAGGGGCCAAGAAAGCCCGTTGCAGTAGACTAGATATATAATTTATAATTGACGCATAGGTTATATTCGAGAGAAAGAAATTAACACCAAATGAAATAGTAGGATGTTGATTTATCGGCAGGTCCTTACTTCGGGAGGGGTAAAGGGTGAAGAATATAGTTTATGTGGAGAATGAATGTTTTGTTGGTGTCACTAAAGAAGGGTTAAAATTTTCAAATATCAAGACGAAGGAAAAGAAGTATCTGACCTTTGATGATATCGGTACGTTGGTATTTGATAATAGAAAGTGTTATCTATCGGAGCGGGTGATTGAATATTGTGTCCTTAATCACATTGGAATTTTATTTTGTGACCGAAGCCACTCCCCTTTAGAAATGATCGAGACTACCTACAATCAGGAACACCGCTATGAACGCTTGAAAAAGCAACTAACCTTAACTAGTA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //