Array 1 102551-104401 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018185.1 Nostoc sp. NIES-2111 plasmid plasmid1 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 102551 37 100.0 36 ..................................... AACCGCCGTGTTGGTGGTGCTAGGCGATCGCAACAT 102624 37 100.0 37 ..................................... AACCACACATAACATATTAACGGATAGCTACTCTCAC 102698 37 100.0 37 ..................................... TCTTGAGTTGGATTCCGGTAGTTACTGCGGTAGTTGG 102772 37 100.0 35 ..................................... GTGTATAATTCACGGCGTATCAATTCCCAGTTTAA 102844 37 100.0 35 ..................................... AATGTAGTATCAGCAGCTACGCTAAAGGGTACGGA 102916 37 100.0 42 ..................................... AACTATCCTATCTATGGGGTCAGCGATGTAAGCTTCAAAGTG 102995 37 100.0 33 ..................................... CATCCATTGATAAGCCTTTTCCCCAACTACACC 103065 37 100.0 31 ..................................... GATTTTACCCAGTATGGGTGATCGCTTCCAC 103133 37 100.0 35 ..................................... TTGGAACCGCGATCGCAACTGCGGGAAGTATTTTA 103205 37 100.0 36 ..................................... GAAGGGCGATCGCGTGGGCGCGTGCGAATCGATGGC 103278 37 100.0 36 ..................................... TTTGGCGTAGATGCCGAGGAAGTCGCACTTGGTAAA 103351 37 100.0 37 ..................................... CTTAATTGGGGGGATTTGATAGATAATGTCTTGCTCC 103425 37 100.0 34 ..................................... ATACGCGCGATCGCTTCCCTGCAAATTTGCAAAA 103496 37 100.0 35 ..................................... GAATATCGCCTCAATAGCTTAGACGAAAAAATAGA 103568 37 100.0 37 ..................................... TTAGATACGCTCAACTACTGGTATGGGGTAGGGCAAA 103642 37 100.0 38 ..................................... TTTTGGCAATCCCTCACTAGTATCTACTCGTTTCCCAC 103717 37 100.0 33 ..................................... CAGATAGTTCCATCAAGCGATCGCTCTATTTGC 103787 37 100.0 35 ..................................... AGACATTTCTATGATGTCTTAGGGGCCAAAGGACG 103859 37 100.0 35 ..................................... GGTAACAAAGCGTAAACGCCCAATTGCAGTAAAAG 103931 37 100.0 33 ..................................... TCTTTGATAGAGGCGATCGCTAGGAGGTAGGGA 104001 37 100.0 37 ..................................... GGGAAAGAGGTATTTGACACTTGCAGATTCATAGGAA 104075 37 100.0 36 ..................................... ACAGCATTTCCCTACCTTGGCGGATAAATTTCTGAT 104148 37 100.0 34 ..................................... CAATAGTTCGAGAAATAGGGCAAAGGCTACACGA 104219 37 100.0 37 ..................................... GAAACTTTTCTAAAGTTGTAATCCATTTATTATCAAA 104293 37 100.0 35 ..................................... ATACGCTTATCGATCGCATTAGCAGAAAGCATAAA 104365 37 75.7 0 ...........................CCC.CATTTG | ========== ====== ====== ====== ===================================== ========================================== ================== 26 37 99.1 36 GTTAAAATCTTCATTACTCCCTATTAGGGATTGAAAC # Left flank : ACTGTGAGAACTGACCACCTCAAGCCAATAGACTATTCAGATTCGGAATGTCGGCAGATGCGGGAGATATGCGATCGCATTTGGAAGCTATGGAAGAATGGTAAATTGGAAGCACCAGCCCAAGCAGTTCTAAAGTGTTTGGGGGAACTCAAGCGACCTTATTTGACCGAGTTTGAGGAAAAACTGTTGAGTGTGATTGAGGCAGAGTACGGGCAAGCCGAGTAAATTTTTCAAAGCATTTGACCATCATTAAAAAATAATTCTTCTGCTGAAATGCGCGGATGGGTGGGTGTTCAAAACACGATTCTGCAAAAAGAGCTTCAAATTCGCTCAAGACAAGGGTTTTATCAAAAAATCTCCCTCAAGTACCCGCGCACCTTACGCAGTCTAGGTTTTAAAGATTTCTTCCCTACTCAAACTGTAATCTTCGTGGTATGATTGGCTCATCCGCGCAACAGAACCTTGAAAATCAAATAATTAAAGGCTTTTGGAGTTCCGCA # Right flank : GTCACTCTAAGCAGAGGAAAATACAAAATCAGAGTGAGTTAGGAATATAAAAAGTGGGAAAGTGAGTCTATAAACAATGGATTGAAGTTTAGCAAATCCTAATGATAGTTGAGGGATAGGAAAAACTGTCAGCCAAGGCTGGATTAAATTAAATAGGATAAAAGGTTGAACAATTAAGCGAAGATTATTCAGAATATTTTTCCAGCCTTTATTATCATCCCACCAGGGATGTTGAGCTAATCTTGATGGAGATGTTGGAGGAGAAGGCTGCATTTGTTCAGAGTGAAGACTAACCATTAAGTAGGCACTACAAATAATCTCCCACCAACGTTCAATATCTTGATAGCGAGTAAAACGATAATCTGCCCAACCTAATTCATTTTTACTTTGCTTTAAACCATATTCAACCCAGGTTCTTAAACCATAAAAATTCCCAACTTCTCTTGGAGTAATGTCTGGATATTTAGTCATGACATACCAAGTAGAGTTTCCTGGCAACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCTTCATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 118142-119473 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018185.1 Nostoc sp. NIES-2111 plasmid plasmid1 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 118142 37 100.0 34 ..................................... ACAATAACCCAGTGTAATAGCTGGGTTTTCCCAT 118213 37 100.0 34 ..................................... CCATAGTCTGCTCCGTACTTAGCAGTAATAAAAT 118284 37 100.0 35 ..................................... CGGCTGTAACATCCGTAAGACAACTGGCACAACGG 118356 37 100.0 33 ..................................... AGATTCTTGTGAAATTCAGCTAGTTTTATTTCA 118426 37 100.0 33 ..................................... GAGTGGAAACGCTCTCTAAACCGCGCGATCGCC 118496 37 100.0 35 ..................................... CTCTAATGAAATTCAACAGCTGGATTGCTCTAATT 118568 37 100.0 36 ..................................... TTTACTTGAAAGAATTGCTTGCTAATACTATCTAAA 118641 37 100.0 34 ..................................... GATAGATTGATTCAGGTATCGCCTTACTTATATT 118712 37 100.0 34 ..................................... ACATCTACATGCTGCAAACAGGAATATTAAATAC 118783 37 100.0 36 ..................................... CGTCTAACCCATTACGTCCGTCTAACCCATTACGTC 118856 37 100.0 36 ..................................... GGACGTAACAAATATATGAGCCGAAACACGGCTGAT 118929 37 100.0 35 ..................................... AGATAAACACTGACTGGTATTACACGGCTATTAAT 119001 37 100.0 38 ..................................... CTATTTGGTAACTTAGGGGCTGCGGCGATTACTGGGAC 119076 37 100.0 32 ..................................... GATTTATTTTCACACCCAGGATAACAACACTT 119145 37 100.0 36 ..................................... TTTTACATTGCGATCGCATCCACGGGAATTGAGCTA 119218 37 100.0 38 ..................................... ATCGGCGTTGTAAATCAGTTCTGTAGCTACTTCTGGGC 119293 37 100.0 35 ..................................... TACTGCCCAAAGAACACCGCACCACATCAAGCGCT 119365 37 100.0 35 ..................................... TTAATTCCTTAGTTCTAGGAAACAAATTAACTAAA 119437 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ====================================== ================== 19 37 99.9 35 GTTGAAATTTCACTAACTCCCTATGAGGGATTGAAAC # Left flank : AATGAATGTGATTGTTTCCTATGATATCCCCGAAGACAAACGCCGCACCAAAATCCACAAAATACTCAAGTCTTACGGTCAGTGGGTACAGTATAGTGTGTTTGAATGCGACCTTACCGATACTCAGTATGCAAAATTGCGATCGCGCTTGAATAAGTTAATTAAGCCTGAAAGCGATAGCATCCTCTTTTACTCAATGTGTGCTTGCTGTGTAGGTAAAATTGAACGTATTGGTGGACAACAGATTCGTGATAACAGTCTTTTCTTTGCAGAATGCGCGGATGGGTAGGTGTTGAAAATGTGATTCTTCAAACAGGGCTTCAAACCCGCACAGGGGGAGTGTTTTGGAAAAAGTTGCGGCTCAAGTACCCGCGCACCTTACACAGTCTAGGTTCTAGCGATTTCTTCATAACTCAAACTTTATTCTTCATGGTATGATTGGCTCATTCGCGCCGTAGAACCTTGAAAACTAAATATATGTATAGTTTTGGGCTGCCGCC # Right flank : TACTCTTTGGATTTGGAAAAACATACCTGTAGTAACTTTATAGCTAGTAAATAGGTTGCTCTGATAATCTTTGCAAAAGGTTTTGTATTTTGCTAGTTAAAGAAATCTCACTCTGGGTAAATTCTTCGCAAATATTATCATCAACTTCATATGTAACGTATAGACCATGAATAGTCTTCGCCTTGGCATTAATTGAATAAACATCAAACTCTGGTGAAAAACATAAGTAACATCTGCCAAGATATCCATGTTCTCGTGATCGTGACAAGACTAATCGATGCAATGATTGTCCGGCACGAAGACATCGATTATAGCCCTCATTTTGCATAGAAGTCACAAATTCTACCATCAAATCAGCTAACTGTTCTCCTAAAAATTCCCTCATTGGGTCGCCATTATAAAACTTTATAATTAAGTTCCAACTGCTCATGAACTTATGTTCAATTGAGTTATCAGATTCAGAAAAATCAGTAAGTTTATTCATCAAAAATCCTCAAAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTAACTCCCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 118967-119518 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018186.1 Nostoc sp. NIES-2111 plasmid plasmid2 DNA, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 118967 37 100.0 37 ..................................... TTTCAAATATTACTAACAATCAAACTTTTACTATTGG 119041 37 100.0 38 ..................................... TTCTGAAATGTGGGAGCCTAAAATGAAATCTTTGGAAA 119117 37 100.0 33 ..................................... AATTTAAGATAGCTTCTCCGAATCAAGTTTTAA 119187 37 100.0 37 ..................................... CCAAACCTCAGAAGTCTAACGATGCTGATATAAACAA 119261 37 100.0 34 ..................................... AACTTCTTGCCGGAGTTCATGGCGGTTTCCGTAG 119332 37 100.0 36 ..................................... AATAGCCCCGGTAGATTCATCAGAACACAAGCAAAA 119405 37 100.0 40 ..................................... ACATCGGATGGCGCTTCACCTTGCGATGGATCATTACTAT 119482 37 94.6 0 ..........G...A...................... | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 99.3 37 GTTTCCATAACCCACATCCCCTAACGGGGACTGAAAC # Left flank : GATCGCAGCACCTGAAGTCATTTAATTACTTGCCTACTGAGTGTCAGCAGATGCTCTTGATCTGCGATGGCGGAACGCCCAGCTTCGCTGATCGCATCATTCGGGTATATTCGAGTGGGCTGGAGGACTCGGTGCAGAGATTTTTGGAATCGCTAGGGAAGCTGAATCGGGCTTATTTGACAGCACTGAAAGAAAAAGTGTTGAGTATGATTGAGGCAGAGTACGGAGTTACAGATTAAACTGCTGAAGCACTCGACAAGAGAAAATACTTATCTTATGATTGTAGAATCAACTTGATGTTTGGCAAGTCAAAGCGGGGTCAAAAACCCTGAAGATTTGCCAAAATCGCCAGAAACTTGAAAACAGAATAGTTATAGCGTTTTTAATAATAGGGGAGTTGCAAATTACTTGCAATAAGAGCGGCTGAAAATGGACTAAATTTTTGATCCGTCAAAATGCTTCCCAGGAAGCTTGCTCTGTATAAGTTTCAGCACGGAGCG # Right flank : CTCCTTACCAACTCCTGAAAAACCTGCTATGACCAAAAGTTTATAAGCCTTATTACCCCGCAAAGGGATTAAAACACGCAAAAGATGGGATTTACAAAAGTAGACTTGCACCGAGTTTATAAGCCTTATTACCCAGCAAGGGGACTGAAACTCACACTTAAGAGCGTTAGTCATCCAGGTGTCTGACAATCGCATAATTCATATTCTGATTGTGCAACGCCTTTTATGCAAGTCCCAAAGACAACATTGTCGGCAATTCGCTAAAAGAAATCACATATTTCTCGCCAATATTGCGTTTTAATATCTTAATTGCTGCTTCATGATATTCCTGTCCACCGCTAGAAGCACAAGCATCTGACACTACGAATGTTTCAAATCCAGCATCAAATAGTCCCAAAGCGGTAGCCATCACACAAGCATCTGTATCAACCCCACACACTGCAACTGTAGTAATAGCGTCCTTTTGCAGAGCTTGGAGTAGGGCAGGTGACATCGACGAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATAACCCACATCCCCTAACGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 29289-28960 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018184.1 Nostoc sp. NIES-2111 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 29288 36 100.0 35 .................................... GCATCGTGCGGGGTGAGAATTGGGTTTACGAAAAT 29217 36 100.0 38 .................................... GTAGTTAGTAATAATTAATTCTTTGCCCTTTTTTACTT 29143 36 100.0 37 .................................... AGTCTAGATATTGCAACATTAACATTCTGAGGGTTCT 29070 36 100.0 36 .................................... GAAGATTTTAATTATCGCCATGTCGGGGAAATAGAA 28998 36 88.9 0 ...................TG.....T........A | ACT [28981] ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 97.8 37 GTGCTTCAACATTAGATGCCATTAGGCGTTGAGCAG # Left flank : GGTGAAAGTCGGGATTTAGTAAATGATATTACCCTCTTACCAAAAAACTACTATGCAGAATCAATGCGGTGGTTAATCAAGGATGAACACGGGTTGCTAACTTTACCTTATTGGGTAGACCACGTAGGTTCGCAAGGAACGCGATGGCTGCGTTACGAGCTTCAGGAATGCCAAGTATTGCAACCGCCTGAATTATCTTGGACTTCAGTTCAAAGTGATTAGGGGGTTATTATTTTATTTTGCAAGTACCTTTGCTTGAGAAGTCTAAATACCATGAGCAATAGCCTTGTCTTCTTATTTGACAAGCCTTTTAGGGATTTTATACGCATCCAAGATGCTTGCGATTTCCTGGAACACCGTCAACACAAGAGTTGAGGGCTTTAACAACTTTCCTTGTGCTATGAATAGCTATTAATTTTTGCAACTGGACTAATCTTCAGTGATAGATGCTTGTAAAATTGAACTAGAGCTTAGGCGAGTCAACAAGTTTGGCGATCGCC # Right flank : AAAAATAGGCTCAAGTATTTGCGCTTAATATAAATACGTTCTCACTGAGTACAAAACTAGTCATCTTGAGTCTCGTCTTTCCGAGAAATTTTAGCGATAATTTTTTCCCATTCCTCAATTTGCTTCTGTATTTGTAATTTGCGATCGCTCAACTCTTTATTATCATTAACAGACAAATCCTGACCACTCAATCGCTCACGGTAAAGAGCAATCAGTTCGGTTAGGGCTTTTTTATTGCGTGCTTATCCTCCTGAGTCAGAGAACTCACATTGACTGGAATCAGCTTTCTGCCTATTCTCTCCACAAATTCAGACCGACTTAAATCCATGCTGTCGGCGATCGCATCTAATCCATCAATCCCGGTAGGAGTTAGGGCTAGGTTAACTCGTTTCTTCACCTCATCGTACAGTTCTGGTACGTCTTTTTGACCTTTTTGCCCTTTCTTACCCATTGCCGTCTACTTTTTACATTCCTCCCAATCATAGTAAACACATTCAACA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTCAACATTAGATGCCATTAGGCGTTGAGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 519834-518410 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018184.1 Nostoc sp. NIES-2111 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 519833 37 100.0 38 ..................................... AAGATAAGGTGGGGGTGGAGTAGACCCATTAAAAGCAG 519758 37 100.0 41 ..................................... ATGATGAATATGGCACCCCCTTCAGTAAACTAGACTTCCTA 519680 37 100.0 36 ..................................... CTATTTCCTCTACCTCTGATAAAATCATGTAGATAA 519607 37 100.0 38 ..................................... TTACTCATCAGAGATTGGGAATCTAATCAAGGAATTGA 519532 37 100.0 47 ..................................... TTGTGAACTTATCGTCAACAGAGGTTGCCCAAAAAGACCTTAGTATA 519448 37 100.0 39 ..................................... TTGCTGGATTACTCAAAACTGAATTAATGCAAACCCTAG 519372 37 100.0 42 ..................................... ATTAAAACAAGTAAAGGTTAATGAAGGTGGAATGTGTCTAGC 519293 37 100.0 37 ..................................... AGCCGCGAACGCTTTCCTTCTTCGGGATGAACGGCGA 519219 37 100.0 43 ..................................... TTACGTTGACTACGTTCCCAACATACGGGACACACAACACCAT 519139 37 100.0 40 ..................................... AATTATGTTATATCCATGAGGCTTAAGGGAATTATATTTT 519062 37 100.0 35 ..................................... GACTACTCCAGTTGACCCTATGGTTACTTTTCTAG 518990 37 97.3 36 .........C........................... ATTGGACGACAAGTTGTATAATCTTTGCTATAAGCA 518917 37 97.3 45 .........C........................... GTACACTTCGCGCCAGAAGCCATCCCGCCATTGGTTAAACTCGCC 518835 37 97.3 41 .........C........................... TTCATCAAAACTATTGAGAATGAACAAGGTAAGGTGAGTAT 518757 37 97.3 43 .........C........................... TTGCAAAGTGTTTCATTGAGGTTAACAGCATACCGTCAATGAG 518677 37 97.3 47 .........C........................... CTCAACTAATAAAATCCTATTTAGGAATCCAACTTAAGATAACAAAG 518593 37 97.3 38 .........C........................... AATAATTTTAGGAGTATGCCCTTTACTTGATAGGTTGA 518518 37 97.3 35 .........C........................... AATTGACTTAGCCCATCTGACTAGTCTGCTATTAG 518446 37 91.9 0 .........C......................A...A | ========== ====== ====== ====== ===================================== =============================================== ================== 19 37 98.6 40 GTTAAACACTACCTTTACCCCGCAAGGGGACGGAAAC # Left flank : CTCCCGACTTGAGCAGGGGGATAATTACATCATGCCAAAGTCAGCAATTCCTACTTTTTCTACATTGCGTAAAAACACAATGGTCGAGTGCTTTTTTTCAAGCCATACTCTGGTTTGGATATCAACCTACTCATCAATTACTAAGGAGTTAATTTTTTAGTTCTGTAACAATTAAACCTGTCTACATACTCTTAAGAAAGGGCTAAAACTTCTATTTTTGCTACTAATTCGGTTTTGTAAAAGGTTGTAAAGTTTATTGTGAATTCGTCGCAGTGAGCTATAGATAGCTATGTTGAGCTATAAAGTAAAAACGATAGATAAGTTTATAATTTAATCTTGACTCCTTAGAAATATTCGGTTAAATTCTTATTCAAGGTCAAATTTAAAGATTTAACCTTCTAATTTATCCATACGGTACATACAGGTTACATCTGCTTATCCGTACTTCAGCGCAACTGAACCTTGAAAACTAGATATAGAAATAGTTTCCAAAGGGTAGG # Right flank : TATTTTATTGATGCGCGTTTGCTTATATTGTTACTAGCATGTTAAAAAGCAGCAATTATTCACAAGGGAGGAAATAGGCGAACTTTCACTATTTCAAACCTTATTAACTAAATTTTCTACACTCTCAGCATCATTAGGTAAAGCGGCTGTCAAAACTTCACTACCTGTATCTGTCACTAAAACATCATCTTCAATGCGGATACCTCTGACATCAGCAAATTGTGCGAGGCGTTCCCAATTTACTGCATCCTGATATTTAGCCCGATTTTTGGCATTGTTTAAAATTGCAGGAACTTGATAAAATCCGGGTTCGATTGTGACTACCATTCCTGATTGTAAGGGGCGATTTAAACGCAGGTAGCCTAAGCCAAAGCGATCGCTTCTACTCCTGCCTTCCTCATACCCTGCTAAATCTCCCAAATCTTCCATATCATGCACATCCAACCCCAACAGATGACCGATACCGTGGGGAAAAAATAAGGCATGGGCATCGATTTCTA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACACTACCTTTACCCCGCAAGGGGACGGAAAC # Alternate repeat : GTTAAACACCACCTTTACCCCGCAAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 3 1916720-1918530 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018184.1 Nostoc sp. NIES-2111 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 1916720 37 100.0 44 ..................................... AAAAGAAAAATGCTGATTATAAAAATCAGCACTGCTAAAACTTG 1916801 37 100.0 36 ..................................... ATAGCGTTTAGAGATTGCTTGAAAAATTGGGGTGAC 1916874 37 100.0 36 ..................................... CTACTTTGACAGGAATGGCGAACGCACAGAGCTAGG 1916947 37 100.0 36 ..................................... TTGTGCTTATTCTCTTCAATGAAGCTTGATATTTCA 1917020 37 100.0 41 ..................................... TCGCTTAGATAAAGAAGTTGCTCCTACCTCTTCTACAAGAA 1917098 37 100.0 41 ..................................... TTTTGGAAGCTCAAGACCGAAGAGAAAATTAATTGGGGGGA 1917176 37 100.0 36 ..................................... TTTGTAGGGATCATAGCGATCCCATTTCGCTTATTT 1917249 37 100.0 35 ..................................... ACTCTATATAGACAAATGATATCATAGCCTATATA 1917321 37 100.0 37 ..................................... TGATGCTGCACCGTTGATTCTTAGTACATGACCATGC 1917395 37 100.0 41 ..................................... AATCGCCATCATCTAGCATCGATTGAATTTCTTTAGACAAG 1917473 37 100.0 37 ..................................... CCGCCGTGGTCAAAGTCAATTCGGGGGATGGGGGCAT 1917547 37 100.0 35 ..................................... CATCCCTACGTCGCGGCTAAATATCAAATTTGTAC 1917619 37 100.0 35 ..................................... GAGGCAGTAGAAGTAATTTCAGGTATGGCGTTAGG 1917691 37 100.0 36 ..................................... AAGTCATAATTAATCCTCAGCGTTAAACAAGTCTGA 1917764 37 100.0 37 ..................................... CAATTTTTAACGATACTGCATCAGGCATTGGTAACAG 1917838 37 100.0 38 ..................................... TATTGCTTACTCAGCCTAATAGGCATTGTCCCTATATA 1917913 37 100.0 39 ..................................... AAGCAGCAAGCTACAAACAAGAGTTAATGCTGTAATAAA 1917989 37 100.0 35 ..................................... TCTACAGAGGCTTCTAGGGCTTGAGCCTGCTATTG 1918061 37 100.0 35 ..................................... CCTTCTTTTTCTGTTCGTGCTATTCCTATTGAAGC 1918133 37 100.0 36 ..................................... ATTTTCAACATCATCAAAAAGGATGTATCGCTTGGG 1918206 37 100.0 34 ..................................... ATGTATTTCTGCAACCTCTACACCATTCCAAAAT 1918277 37 100.0 36 ..................................... TTTTCCGGGTTAGCTTTCAAGAATCTAACTCTTAAC 1918350 37 100.0 33 ..................................... GATAATTATAAATTTGTATACACTGCTCAAATA 1918420 37 100.0 37 ..................................... TTATCAACTCTAACGAACCTACTAAAAAGTTGTAAGT 1918494 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================================ ================== 25 37 99.9 37 GTTTCAACTCACAACTTCCCCTCACGGGGACTGAAAC # Left flank : TAACAGAATTGGTGTTCCTCCCCTACCCTGGTGTATGTATGTTGTGAGGATTGGTTGCTGGCTGAGGGATGTTGCAAGGGGAATCCTTTCTATATTTTCCACGAAAGCGATCGCCTCTGCATCTTTGAGTTGATTTACTTGTGATGGCAGAAAACTGGGAAACATTATACTTATAGTTGAGGACTGTAGAAGGAAAGCTGCTGGGTGTGATTGCGAAAGAATACGGAGTTAGAATTAAACTCTAAAAAATACTCGACAATCCTAAATACTCATTTTATGATTAGGTAATCAATTTGATTTTTGACAAGTCCAAGTGCGGTCAAAAACCCCGGAGACTCGTCAAAATCGCCAGAACCTTGACAATATAATAATTACAGCGTTTCAACAATCAGGGAAGTTGCAAATAATTTGCAATAATCACGGCTGAAAATGACCTAATTTTTCCATCCGTCAAATCACTTCCCAGGAAGCTTGCTCTGTAATAGTTTCAGCACAGAGCA # Right flank : ATATTATGACAGTATTTTTACTGAATTTAACCTTTTGCTAGGCATTTCTTAATCTAACTGAGATAGCGTGAAACACTGAATCCACTATTGATATAACTGTGCGTTGACGATCGCTCAAACTGTGAGGTACATCTTTGCAGTTTAAATTTTCGTGCCAAACCGCAAGAAGATATGGCGATCGCCTATTGCTTCCACACAAACAGAGCTGAGATTTTAAGTGTAGCCGCAATCTATGGTAACTACTAATTCTGTTCGCTTCTCTCAGTTTAACGCCTCCCTCAATCGCAACGCTGAGAGTCAGCTAATAACTGATTTATCTACCCCCGATAATGCCCAAGCAAAAGCTGTAGCTGAGATTATCCAACGTAATAACCCGGATGTTCTACTAATTAACGAGTTTGACTACGTTCAGGAAAACCCACTACAAGCAGTTCAACTATTTCAGCAGAACTACTTACAAGTCAGCCAAAATGGTGCTAATCCTGTTGAATATCCTTACG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTCACAACTTCCCCTCACGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 4 2026753-2026121 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018184.1 Nostoc sp. NIES-2111 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 2026752 37 97.3 37 ....T................................ AAGTAGAAGCGATTGTAACAACTAAGAAAGACGCTGA 2026678 37 100.0 36 ..................................... AATCTCACCCACCATTTACCAGCAGCACAGATACCA 2026605 37 100.0 39 ..................................... TCTCTGATGTCTCTGACCAAGTACGGACTAATGTAGTTC 2026529 37 100.0 38 ..................................... TCAAATATATAAAACGATGAAACACACATAGAAGATAT 2026454 37 100.0 38 ..................................... AACCAGGGATTGTTGCTTTATTTCAAGATGCTGCTAAA 2026379 37 100.0 35 ..................................... ATCAAGTTTGAGGCAGAGGATAGGCAAAGATGGCT 2026307 37 100.0 40 ..................................... TGAGATTGAAGCTTTTGTGGGACAATATAAAAATGTTAAA 2026230 37 100.0 36 ..................................... TAATAACTATATTTCGCCTATTAGTAATATCAGCAA 2026157 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 99.7 38 GTTTCAGTCCCCGTGAGGGGAATTAGTTAATGGAAAC # Left flank : AAAGATTTTGGCTTGATTTGTATGGGGTTCTGCTTGATCAGCCGCTACACCAGACAGCCACGGTACTACACTCCATCGCCAAGGGTAGTTATTTTCTGGCAAGCCTATTCTATAAGGCTTGGGAACAGGTAGAGTTAATTGCTCTGCCAGTAATGGCAGCCAAGTTTGCTCATTTTCGATGAGTTTTGCTGCTATTGTACGACGTGGGAGCCTCACACATAAGCGATCGCCTAGTCGAAACATTACATTATCCCAACCAGTATCAACAAGATGAATTGGTAGCTGCGCCAAATCTGGATGCTGATTTGATAACAAACCATATACGAGGGTTGTATCTATTTCCATCTCCGATACTGGCGTTCCCATTGGGTGCAACTGTGCCTCTGACTCCATATTTGCTTCCTTTAATTTGTTGTGTCTTTAAGCGCCAAATTTTTGATATACGCTACTAAATCTTTGTTATGCACTAAAATTCTGCCAAATGATTAAGAAATTTTTGA # Right flank : AGCTCTGTGCTGAAACTATTACAGAGACAGCTTCTTGGGAAGCGATTTGACGGATAGAAAAATTAGGTCATTTTCAGCCGTTCTTATTGCAAATTATTTGCAACTTCCCTGATTGTTGAAACGCTGTAATTATTATATTGTCAAGGTTCCGGCGATTTTGACGAGTGTGCGGGGTTTTTAACCCAGCTTTGACTTGTCAAACATCAAGTTAATTAATCATAAGATGAGTATTGAGTATTGTCGAGTGTTTTCTAGAGTTTAAGTGCTAACTTAGTACCCGTTTTTAATCAAGTATCGTCAGCTTTTGATAAATTTACTCTTAGTGTAGGCGATCGCATGACTCTTTCTCAGCCCTGGACTGGGATTTTCACAATAATTGCACTTAAATTTAGCGATAGTGCTTAAAGTTTGAAAAATTTCCCTTGAGAATACCAAGTACGAAGTCGTGCTGGTTTTGTTTTAAGCAAGTAAGCAATAATCACAATTTGATTAATTAGAGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCGTGAGGGGAATTAGTTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 5 2187005-2187484 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018184.1 Nostoc sp. NIES-2111 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 2187005 37 100.0 40 ..................................... AGTCAAAACTTGCTAACTTCAGTGAGTTAGAATTTTGGCA 2187082 37 100.0 34 ..................................... GCATCTTCGTAAGTCTCCACTACTAAGGTTTTAC 2187153 37 100.0 34 ..................................... ATTTCATCCCAATACGGGTCATATAAAGGTTTAA 2187224 37 100.0 36 ..................................... CGATATGAATGCGATACTTTACCTTTTGGCTTACGG 2187297 37 100.0 38 ..................................... TTAAATCGACCTACTAACGAAGTAAAGCTAGCAATTAT 2187372 37 100.0 41 ..................................... TTTGATGCCAAGGCTATATCCTTCACCTCGTCCTCACTTAG 2187450 35 83.8 0 .......T.A...................--.A...T | ========== ====== ====== ====== ===================================== ========================================= ================== 7 37 97.7 38 CTTTCAACTGACTAATTCCCCTCACGGGGACTGAAAC # Left flank : ACTAAACTGTTTTATCTAATTATCTATGATCTGCCGGATAATAAGGCAGCAAATAAGCGCCGGACTCGTTTGCATAAAATGTTGTCCGGCTATGGGAAATGGACGCAATACAGTGTGTTTGAGTGTTTCTTAACCTCTGTACAATTTGCTACCCTGCAAACGAAAATAGAAAAACTCATCAAGCCAAATGAGGATTCTATAAAAATATATGTCCTTGATGCTGGTGCGGTTAAACGGACAATCACTTACGGTTCCGAAATGCCTCGACAAGAACAAGCGATCGTCATATGATTGATACATAAGCTTGATGTTTGGCATATCGAAGCGGGGGCAAAAATCCCAGGAGATTCGTCAAATCGCCAGAACCTTGACAATTCAATATTTTCAGAGTTTCAACAGTTTCAGTGAGCAGTGTTTGAGCTTTATTTTTTAGTCAGAAGAAATAGATCCGTCAAAAATTGATTTGTAACCTGCTCATAGACTAAATTTCAGATGGCGGA # Right flank : TAGCCATGAGGATTACAGATTTATTACAAGGGATAGGCTTCCAACTGACTAATTCCCCTGTAATTAAGAATTGCGAATTGGGATTGCTAATTAAGCGGAAAGGAAAGTTTTCACTTGACCGAAACGGCGATCGCGTTTTTGGTAACTTAACAAAGCTTGATGAAATGCTTCTGTATCAAAATCAGGCCAAAGAATATCTGTAAAGTACATCTCTGTATACGCCATCTGCCACAATAGAAAATTACTTAACCGCATTTCTCCGCTAGTGCGAATCAGTAAATCTGGTGCTGGAGTCTCTCCTGTATGGAGATATTTTTCTACAAGGCTTTCATTGATGGTTGCTGCATCCAGTTTACCTTGTTGCACTAGTTGAGCTAGTTGACGACAGGCTTTTGTAATTTCGTGACGGCTGCCGTAGTTTACAGCAATAGTAAAGTGAATTACTTGATTATTCAATGTTTGTTTCATTGAATGTTCCATTTCTGTTTGCAGAGATGGGG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACTGACTAATTCCCCTCACGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 6 3337363-3336813 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018184.1 Nostoc sp. NIES-2111 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 3337362 37 100.0 35 ..................................... TCCCACCATACGCTCATAAGGCTGAATATTGAGAG 3337290 37 100.0 36 ..................................... TAAAACCTAGACCAGGACTTGAAGACACCCAGACAT 3337217 37 100.0 36 ..................................... TCTTACCCCCCCCGCCATGCCAAAACCCCAGTTATA 3337144 37 100.0 35 ..................................... ATTGCGTTCGTCTTCGGCGCATTTACCAAGGTCAG 3337072 37 100.0 42 ..................................... CAAATATCTCCAACAAAACTAGGGGATGCAATGGAAGCGGGA 3336993 37 100.0 37 ..................................... GCGCACGAGCATCTTCCAAAACCCAAAAAGTATGCTG 3336919 37 89.2 33 A...T................G..............T AACTAGAGTGAGTTTATCCCAGAAATCGAAAAA 3336849 37 67.6 0 ........A..T.....AT...AAAT.C.C..A.G.. | ========== ====== ====== ====== ===================================== ========================================== ================== 8 37 94.6 36 GTTTCAACGACCATCCCGGCTAGGGGTGGGTTGAAAG # Left flank : GTTTAGATTTATCCAAAAATACTGAACCTTGAAAATATAATAAGATAAGAATAGCGCCGCAGTTCATGCTCTTTTGAGTCTCTGTACTGTGAAAAATTTGGGTTAGTTTTAATGGTCGTCAGACTGTTGTGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGTTGCTGTCGCAAGACAGGATAGGTGCGCTCCCTGCAATAAGGAGTAAGGGCTAATTAAGTCCTAGCCGTTTTAATAACGGTGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCCCAAATATTTTTTTGGCGAATCGAAGCGAGGGCAAAAACCCTGGAGACTTGCCAAACTCTGAAAACCCTTGTCCTGTATTGAATCAAGAACTTAGTGCGTCAATTGATTTAGTTTTTTCATTGCCGACAGAAGTAGCTTTTTACCAGACTTGTCAAATAGACATCTGAAAAGCTTATATAATAAGGGTCTAGGCGGGAACA # Right flank : GGTTGAAAGGAATGTCACCTTCCCAACACTGAAATTTCAAAAGCCATGCTGACTAATGGAAGGTTAAAATCAATAGGTATTTCCTTGTGAAGACGATATGCACCATTTACTTTCAGTGATTAGTTACTTCATCATTAGGTAGGGGCAGTGTTGAGTGTAGAGTAATAAAATTTTCCCCTTGAAACTTTGTGTAGCAAAATATTGGTGAGTGAGTTTAATATGGTAGTTGCTACGTCAATTAATCCATAATTTTAATATGGCATTAATTTGTTAGCAGAGGTATAAACTAATTCGACAAGACTAATCTGTTAACAGCGACATCAATTTGCGAAAATCTAGCATAAGTAAATTGATTCTAAAAAATAGCCGAAGCGACATTAATTTGCGAAGAACGACATCAATTTGCGAATTGCGACATACAATGTGAGAATGTACAGCTTTTGTAAAAAGCGGGCGATGGGACTCGAACCCACGACGTTCACCTTGGGAAGGTGACATTC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACGACCATCCCGGCTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 7 3581826-3581124 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018184.1 Nostoc sp. NIES-2111 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3581825 37 100.0 39 ..................................... CACCATAATGAGCGGCGTTGACTACTTGTAAAGGGGCAA 3581749 37 100.0 32 ..................................... CAGTATGAATGCAGCCGCCGAAGATTGGTTAG 3581680 37 100.0 41 ..................................... TACGAAAGTCGCCGTTAACTGGGCGAATATCTAAAGCTTTG 3581602 37 100.0 38 ..................................... GCTTCTTTTTTCCCATCTGGTTTGACATTCATAGTTCT 3581527 37 100.0 31 ..................................... GACCCTAGAGGAACAAGTATTAACTGTTCTG 3581459 37 100.0 37 ..................................... TTCCGGCTGCGGCCCACAATACTGAGCGGGGTACTAA 3581385 37 100.0 43 ..................................... CCGCATTCTTGCCCACCTCTACTGAGCATCAGGATGACTCCTA 3581305 37 100.0 38 ..................................... TTCCGCAGTTGGGACAATCCCACTCTCTAACATTCAAC 3581230 37 100.0 33 ..................................... AAACCATTCTCAAGCCTCGACTTACACCCCCAG 3581160 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== =========================================== ================== 10 37 99.7 37 GTTTCCACAAACTTTTACCCCGCAAGGGGACTGAAAC # Left flank : GATCGCAGGAATAACTTTATCATTTTCTTGTGTGTGGCTAACTGTAGCGGCTGTATTAGTATTTAGAATTTGGCAGCTAAATGGATCTGAGCCATTGTATCCTTTAAAACTAACAACTGTGGAGAAATAAATTACAGGGCAAAGAAGATTTAGAAGCAACTGCCATACTGTTCTCAAACATTAGGGAGAGCTAAAACCCTTGAATTTGATTAAGTAAAAGTACAGTGTGACAAATTAAACTTCCCCAACTACTCGACAACACCAAACACTTATCTTATGATTGGAGAATCAACTTGATATTTGGCAAATCGAAGTGAGGTCAAAAACCCTGGAGACTCGTCAAAATCGCCATAACCTTGACAATACAATAATTACAGCGTTTAACAATTGACAGAAGTTGCAAATTTATTGCAATAAGAACGGCTGAAAATGACCTAAATTTTCAACCCGTCAAATCCCTTCCCAGGAAGCTTACTCTGTAATAGTTTCAGCACAGAGGG # Right flank : CGCACTATTACAGATGCAGCAACCAAACTCCCTAGTGTTTAATATGACCTGAGTGCATAAACCCCACTTGTAACAAAATCTGTAACAGTAATAGTGTTTGACCGTTTACTCGGATAGATTAGGGAGAAATTTATGGGTAATCCCCGCATATAGGGGTAATGTGCTAAAAGATATACGCGACTATCAAATTCTCTTTTTGGGTTTATTTCTGGTTTTGGGAATTGGGACAAGAGATTGGACTTTGCACCCAGAGTTTATCGCTGTGGCGATCGCTTTTTGTTTATCAACTCAGTGGCTATTATCATCGGTCATTAGTTATTGGTCATTTGACAGTAATCAAGAACAACAGCCAAAGATAAATCTGCGTAGCGCCTTGATTACGTCGCTAGGACTCAGTTTGCTATTACGAACTGACCATTGGACAACAATGGCATTAGCAGCCATCAGTGCGATCGCTAGTAAATTTTTCTTTAAAATTGGCGATAAACATTTCTTCAATC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACAAACTTTTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 8 3668522-3669745 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018184.1 Nostoc sp. NIES-2111 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 3668522 38 100.0 39 ...................................... TATGATGTGTAGATTGCCATAGCTTTTAAACCTGTTAAG 3668599 38 100.0 34 ...................................... GAACGTTTTAGAACAATTAGAGAAATTTGGGAAT 3668671 38 100.0 35 ...................................... ACTTCTCTGGTCTATATCCATATTGTTTGGCAATG 3668744 38 100.0 36 ...................................... TAACTAGCTTATTAACGTTAAAAGCTTGTTTGAATA 3668818 38 100.0 36 ...................................... AAAAAACAAACCCTGGAAAGTTTAGAAGCTTCCAGG 3668892 38 97.4 35 .....................................C AAACGCAGTAAACGTAACGTGCTGGATGAGCAAAT 3668965 38 100.0 36 ...................................... TACTAATTTAATTATTGATTCAATATCTGTGCAAGA 3669039 38 100.0 35 ...................................... ACCATTAACAACTACATTAGGAATAGGAATCTCAC 3669112 38 100.0 39 ...................................... TGTAATGTTTCCCAAACCCCGTAATACTCCCAAGCCGGA 3669189 38 100.0 38 ...................................... CTATGACCATGTAACCTTGAGCATTTACCATCATGAAA 3669265 38 100.0 37 ...................................... GGAAGATATTTTATGCTTAATATCTTCCTGCAAACTC 3669340 38 100.0 35 ...................................... GAACGTTTTCTTTAATAGTCTTCATCATTAACTTT 3669413 38 97.4 39 .....................................T CGTCAGCACTACTGCGCGACTGGGCTTGTGATTTGTTTT 3669490 38 100.0 34 ...................................... GCTACCATACTTCCAAATATTGCCTGATTTATAC 3669562 38 97.4 35 .....................................T TGAAATCACCGCGATCGATAGCGGCTAAAGCTTTT 3669635 38 97.4 35 .....................................T TGAGGCTTTGTAAACATCCGTGTGTTTGTGCTGAT 3669708 38 84.2 0 .....C.....CT...................A...AT | ========== ====== ====== ====== ====================================== ======================================= ================== 17 38 98.5 36 GTTTCTACAAATCATTACCCCGCAAGGGGACTGAAACA # Left flank : GGTTATGCAATCAGTAGGATTTAGACGAAACTGCACATGCTGTACTGAAGCATTTGGGGGAGTTCAGGCGATCGTATTTGACCAGTGTAGAAAAGAAGCTACTAGGTTTGATAGAGAGAATAATGTGTAATACCGTTTCACTTTAAAATTGATACACATAGACAGCAGGGGTAGGGGGAAAGAATTTAAAGACTAATTATTTGTATCAGGTATTTCGTGAAATGGTGTAACAAATTAAACTCTTCAAATCACTCGACAATATAAAATACTCATCCTATGATTGAGTCATCAGCTTGATGATTGACAAGCCGAAGCGAGGTCAAAAACCTAGTAGATTCGTCAAAATCGCCAGAACCTTGACAATATAATAATTATAGCGTTTCAACTATTGGGAAAGTTGAGAATAAGTTGCAATAATAGCGGCTGAAATCGACCTATTTTTGAGGTTCGCCAAATCACTTCCCAGGAAGCTTGCTCTCGTTAAGTTTCAGCACTGAGCA # Right flank : TTAACTGCCTAAGTAATATAAACTCCGGATAATTACTGACGATTAAACTCCAGTCTGAAGCTACCAGTGAAAACCAGTTGACGGTAACATTTTTCTAGCTCTTCTATACTTAAATGTTTGGCTACACTAATTCGTTTCGACATGACTCATCTTTGCTCTGTCTGCTTTTACCGTCAGTGATTATCCGGACATGAGATGATAAATGGCTAACCAACAAAAAACCCGCCTTGGCGGGATAAACACAACAACACTATGAACGATGAACCTGAACTTTAAGCGAACTGCCTTAACTCAGCTTCTAGTTGCCTAATTAGTCTTTCATCGCCTTTAGCTCTAGCTACTTCCAAACGATGCTCTATATTTCTTTGAATATTTTGTCTGTGTACTTCTTGAGCTGAACTATTAGCCTTGAGTCTACCTTGGCTCATAGGATTGACCTCTTAATTCTTCTGCATTATGTCTGTTATTCATAACATAGCATAAATTTAGTAGTTTATGCT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTACAAATCATTACCCCGCAAGGGGACTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 9 4490693-4491340 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018184.1 Nostoc sp. NIES-2111 DNA, nearly complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 4490693 37 100.0 38 ..................................... AAGGTAAAAGCAGTTACCTTTTCCTCATCTCTTTTAGA 4490768 37 100.0 39 ..................................... AGTAAATATAAACTTCTTTGCCATAGCAGTTACCTTTGT 4490844 37 100.0 39 ..................................... GGAATGCACCCCGACCTGTTATTGTGTGTTGAGGGTCAA 4490920 37 100.0 37 ..................................... CTTTCTTGGTTAAAGCAGTAGAGACCCAAATCCCTGA 4490994 37 100.0 45 ..................................... AATGCTGCATCACAATCCTGGTGAGTTGCCTAAAATTGCACTCAA 4491076 37 100.0 40 ..................................... TAATTAAGCCCTGCTATCATACGGTATGGGGAAATCTTAC 4491153 37 100.0 37 ..................................... CTTCTCCCTAATAACCCTAGTACTAATCCACTAATAA 4491227 37 100.0 38 ..................................... TTCCAATGTTGAAGCTGATGATGTTGAATCCTTGAGCC 4491302 37 94.6 0 ...............................A....A | A,C [4491333,4491337] ========== ====== ====== ====== ===================================== ============================================= ================== 9 37 99.4 39 GTTAAACACCACCCATTCCCCGCAAGGGGACGGAAAC # Left flank : TAGAGGAGTCGCAATTAAATTACCAGTTAGAGAAGCGTTGGCTACCTTTGCTTAAATTTAATGAGGACAGTCTGAGGGTTTATCCACTGGATGCGACAGCAAAACAGCAAACACGAGTATATGGTAGTGAGCCTCCTTATGAGCCACCAGATTATTTAATTTTGTAACGCCCAAAATCTGGTAATAACCAAGGCTTTACAGGCTGAAACTACCATTTTTGCCAGTGCTTCGCACTTTGTAACAGATTGTAAAGTCTGTTGCGATTTTGTCGCGTCGAGCTACAAGCAGCTATGTGGTTTAAAGTTGTGTAAATAAAAGATAAGTTGAAATTTTTACCTTGACTGCCTGAGTTTTTTCGTTTAAATTGTATCTAGAAGCGTAATTTAATAGAAAAACTTCTGATTTTTCCCTACTGTGCTTTTAAATTACATCGCGTTTTACGTAGCTTGGCGCAATTGAACCTTGAAAACCAAATACATCAATAGTTTCCAAAGGGTAGC # Right flank : ACTGAAACTTCCATAATTACAACCTCACCCATAAGAGCGCAGAGATTTATACTAATTCATGTCAAGATGGGCAAAGTGCTGGAATTGAAGAAGATACGCTCGATTAACCAACCCTATGTTGCGATAATCGGTGTATAAAAATTACTTAATTTTATATGACTGTCAATATTCCCCCAAAAACACGAAAATTACCAACCCAAGCCATAGGCGCAAAGATTTTTCATTCTGTAAATATCGTTAGCCTATTCCTCATGCTTACCAGTGGGTTACAAATCTATAATGCAAATCCTGTTTTTGGTGGACGCGCAGGTTTCCACATCCCACCCATATTTACTTTAGGAGGTTGGTTGGCTGGGGGTAGACATTGGCATTTTGCCGCAATGTGGTTATTTTCTATAAATCTTTTGTGGTACGGATTTTATATTTTAATTACGCGACGTTGGCGACATCGATTTGTTGGAACCAATGACATCAAAGCATTACAAAAAAGCCAAAACCCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACACCACCCATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 10 5753641-5752421 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018184.1 Nostoc sp. NIES-2111 DNA, nearly complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 5753640 37 100.0 34 ..................................... GATATTTTGGAATACAAGATAAGATTTATCTTGT 5753569 37 100.0 36 ..................................... CTATCTTCAGGTTTTGTCAAAGCCGCCGATTCTCAA 5753496 37 100.0 34 ..................................... CGCTCTGTAACTGCTGACCAATCTTCTCTAAATC 5753425 37 100.0 37 ..................................... GCCCCATCATGCCACCGGTGACTGTTGCCATGTGCTT 5753351 37 100.0 36 ..................................... TGGCAACGTTATTGAGCTACCCCGTGGTCACTTTGA 5753278 37 100.0 36 ..................................... GGCAGAGAGATTATGAACCGCGCACAAACGGAGACA 5753205 37 100.0 33 ..................................... ACTACACACAGCTTGAAATGTTTTATGAACTTG 5753135 37 100.0 35 ..................................... AATAAATTGTATGGGTTTTCCAAGAACTCCACTGG 5753063 37 100.0 35 ..................................... CATTCTGCCATACGTTAGGATTTGGCATCTATTCA 5752991 37 100.0 38 ..................................... GGCCAACATCGTCTCGAACTGTACTGGAATTTCGCATG 5752916 37 100.0 36 ..................................... CAAACCTCAATGCAAGCTTTAGGGTCATTGTTTACC 5752843 37 100.0 42 ..................................... CAACCTAATAACAATGATGTAGCTCTAATGTCCTGCGCGGGT 5752764 37 100.0 35 ..................................... CCACCGTTATGTTCGCATATCAGAGAAATGTCCTA 5752692 37 100.0 49 ..................................... TTTTACAGCAAATTGCGGGAAATTGCGATCGCCTACGGCGGGCGGTTAC 5752606 37 100.0 38 ..................................... CTTAAATTTGTCCAATTGTTTGAAAAATTAACGGCTGT 5752531 37 94.6 37 ................................A...T ATAAATTTTACTATGCAACTATCACCCTGGTCTGTAG 5752457 37 75.7 0 .....T....A.T.....T.T.G...A..G......G | ========== ====== ====== ====== ===================================== ================================================= ================== 17 37 98.3 37 GTTTCCATACCTCAAATCCCCTCACGGGGACTGAAAC # Left flank : GACTAGCATCACGGGCATTGTATATCGAGCGGGCAACAATGGCACAGCAGAGGATTGTACCTTTAGATGAGGTTGATCCAGATGAAGTACCTTATTTTGCCATGATTGTTATACCTAGTAAAAATCGGCTGTAGCAGCTTGATAAAACTGAGCAAATCAAATTGATGTGCATCACCTGGTTGCTTTTTACCTCGGCGTTTTGGTTTGGTTAAGAGCAAAAGTACGGTGTTACAGATTAAGCAGCTAAAGCACTCGACAATACAAAATACTTATCTTATGATTGTGGAACCAACTTGATGTTTGGCAAGCCGAAGCGGGGTCAAAAACCCGGTAGATTCGCCAAAATCGCCAGAACCTTGACAACAGAATAGTTACAGCGTTTTAATAATTCGGGAAGTTGCAAAATTATTGCAATAAGAACGGCTGAAAATCGATTAAATTTTCGACCCGTCAAATCGCTTCCCAGGAAGCTTGCTCCATAATAGTTTCAGTACCGAGCA # Right flank : AAATATCGATCTACTTCGACTAAAAAAGATATTTCTTAAGACTTAAGCAAAAGTCTCTAATATGTGGTTAAAGTAACGTTTGTAAAGCGTTGGATTGTAATTTTGCCAATCTAAGTCTGAAGAGTAAGATAATCTTTTTAATGTAACCTGTTGCACATACGCCATTAATGGCCGACGCAGCGATTAATATTTTTGGAAAGCTGTATCTATAGCTTCTCTATCATCCCAAATATGATAAAAATATTTGTTTCCTAATATTTAATACCAATTGTTTAACATTCCACAATAGATTTAAGCTTTTAAAGCTAGATTCTGTCTAATCGTAATTACAAATTACTATCACCCCTAAAACACCCAAGAGGATTTCTCATGTCTAACTCCGAACTAGATAGAGTCATTGTTCGCCCTGTGGATGAGTATAACCAGAGATTGGTTGCTTATGTACATCCACCCAATTGGGTGAATCCTCAACCTGCGGAGACTTATGATTTGGTAGTTAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCAAATCCCCTCACGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //