Array 1 67278-64806 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ819156.1 Streptomyces sp. CS014 scaffold00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 67277 29 100.0 32 ............................. ACGGAGGCCAGCCGGTGAGCCGCCCCCGCGTC 67216 29 100.0 32 ............................. CGGCGGCCCCGCTTTCATGAGGTGGATCAGGC 67155 29 100.0 33 ............................. CCCCCAGCGCAGCGGGTTCCCGATCGCGGTCCG 67093 29 100.0 32 ............................. GAGCGGTACAACGCCTGCCGGCCGACGCTCTA 67032 29 100.0 32 ............................. TACTCCGTCGCCACGATCTGGGCGTCCCTCGT 66971 29 100.0 32 ............................. TCCATCGCGAGGAGCTTCAACCCGCGGGAAAG 66910 29 100.0 32 ............................. TACCGCCTCGACCCCACGCCCGGTCAGCGCAT 66849 29 100.0 32 ............................. CGGACACTGAACCCATGGCCCACACCGACCGG 66788 29 100.0 32 ............................. CTCAGACCGGCGGTGAGGCCTTCATCCCCCTC 66727 29 100.0 32 ............................. GATGGCGATTCGCGGCAAAAGTCCACCCCCAA 66666 29 100.0 32 ............................. TCGGCGTCCTGCTCCCTCAAGGAGGTCTCCAT 66605 29 100.0 34 ............................. CAGCCCCAGNNNNNNNNNNNNNNNNNNNNNNNNN 66542 29 100.0 32 ............................. GACATCATCCGGGTGCCGGTCACCGAGAACGA 66481 29 100.0 32 ............................. GACTACCTCAACGACGCCGCGCGCCGGCACTT 66420 29 100.0 32 ............................. GCGCTCCTGGACGGGCGGCCGGTGACAGGGCT 66359 29 100.0 32 ............................. GCGCAGGTCGGTGTCGGCTCGTACATGCACGC 66298 29 100.0 32 ............................. GGCCAAGAGCTCGATCATGGCCATGGCCTCGT 66237 29 100.0 32 ............................. AGCACGGTGATCCGCCGGTGATCGCGGCTCAT 66176 29 100.0 32 ............................. CAGCGCCCGTACGGCGGCCACACCGACCAGGA 66115 29 100.0 32 ............................. GCGACGACGAGAGGCCGGGGGCATCAGGCCTG 66054 29 100.0 32 ............................. CCCTGCTCCGCCAGCTGGTAGATCAGGCCGAG 65993 29 100.0 32 ............................. TCGTCGGGCAGCCAGGTGAACCCGGACGCCTC 65932 29 100.0 32 ............................. CACCTGGGCCCCCCAACCCAACGGCACCGTCC 65871 29 100.0 32 ............................. ATGCGGGCCCCGGAGGCGACCTTGGTGGCGCC 65810 29 100.0 32 ............................. ATCACCGTGCTCCACTACGTCACCGGTCTGGT 65749 29 100.0 33 ............................. CAGCTGGTGCTCGTGGACACGGGGGCGTCGTCT 65687 29 100.0 32 ............................. CCGTAGAACTCGTCCAGGCGGCGCTGGTCGTC 65626 29 100.0 31 ............................. CGGCCCTGACGCCGGGGGACGTGGTCGAGGT 65566 29 100.0 32 ............................. TGAACGAGGCCCTTCTCGTCCGGGGGGCTGCG 65505 29 100.0 32 ............................. GAGCCGGTGATGCACGTGACCGCGACGTCCAG 65444 29 100.0 32 ............................. CGCGACCGCGTCCTCGCGGCGGTCCGCGACGG 65383 29 100.0 32 ............................. GGCCCGACAAACCGCCCCAGATCACACACCGA 65322 29 100.0 32 ............................. CCCCGCCCCTGCCCGTCCCGCAGGTCCACGTC 65261 29 100.0 32 ............................. ACCACCCGCCCCCGACAAGCCGCCCTCTTCAT 65200 29 100.0 32 ............................. AAGTACGGGCTGTCCTTCATGCGGGCGGTCAA 65139 29 100.0 32 ............................. GTCGGCGAACTTCAGGTCAGGCTCGGCCCTCT 65078 29 100.0 32 ............................. GAGCCGGACGGTGACCTCAGTCGGCGGAATGC 65017 29 100.0 32 ............................. ACCGGGTCGCGGTACATCGCGGCAGCAGGTGA 64956 29 96.6 32 .................C........... GCCGACCAACTCATGGCCGCCATCAACGAGAT 64895 29 96.6 32 .....T....................... GGACCACGTGCTGCACCGTCCAGATGCGATGG 64834 29 96.6 0 .....T....................... | ========== ====== ====== ====== ============================= ================================== ================== 41 29 99.8 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CTCCTCATCGAAGAGGCCGTACTCCACTACCGGATCGGCGAGACCGACGCGATGGCCGCTCAGCTCGGGTATCTACTCACCGCCGGTGCTCTGCCGGCCGTGTCGCTCGGCATCATTCCGACCACCGCACACCGCGAGCAGTGGCCACGCGAGACCTTCCACGTCTACGACAACTCACTGGTCTCCGTGGAATTGATCTCCGCCCGGGTCCGCATCAGCCAGCCCAGCGAAGTCGCCCTGTACACCCAGGCATTTGAGGAGCTGCGACAGTCCGCCCTGTATGGTGCGGCAGCACGCGCCTTGATACTGAAGGCCCTCGACTCGCTCGATTGACCTCGGGTCAGGGCGAAGGCCCCCTCTCCACGAGAAGCGCCTCCAAGCCAGGCTGGAGCCCGGCGTCGCTGTTCGCAGCAAGGAAGAGATAGATGTCCTGTATGCCGGGATCGGTGAAACTACTCGAGATTAAGCTGAGTGCGCTGTAAACCTGCTGGTCATCCAGT # Right flank : TCGACCCGCTCCGCGCGGCCTGCCACCTTGTTGATCGTCAGCGGGCGTCCCGGAGAAGCCCGGCGGCGCGCGGGCTTACCAGTCGCCTCCTCGTCCCCCTCGGACCGTGGCGGCTTGTGCTCTTGGCGAGTGTCATGCTCAGGGTCCGGGGCCTGGCCGCCGTCCGGCCTCTCGGGCTCCTGGTCGTGCTCATCGGTCACGTGTTTTCCCCGCTGTTGGGTGTGCTGAAGGCGCTTGCCCGGGTAGGAGCAGGCTGGCTAAGAGCTGTCCCGTAGATGATCTACGACATGCCGATTGACCAGCGACACTGTGCCTCATCCGGCGTGGGTGAGGCTGTGAGCCTTTTCCATCCTCACCCTGAGCTGGCCAGATGAAGGGTGAGGATGGCCTGGACGAGGCTCGTGATCCGGGTGGTCGAGCATCGCTCATCTACTAGGGGCTTCACCATGTTGTCAGCCCAACAGTCGTACGTCCGAACCAGGTTTTGAATGCCTACTGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 71505-70864 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ819156.1 Streptomyces sp. CS014 scaffold00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 71504 29 100.0 32 ............................. GACAAGCGTCCGGGGGACGAGCTGGCTCCGGA 71443 29 100.0 32 ............................. CCGGGCAGCGCCAGCCGTCCCGGGTGGCCGTC 71382 29 100.0 32 ............................. GACCCGCGCATCTTCGCCGCGATGTTGAACTC 71321 29 100.0 32 ............................. CGCGGTTCATGAACGGTCATCCGATCCTTAGT 71260 29 96.6 32 .................T........... ACTTCCACCGTCACAACGGCGACCCCCGGCTA 71199 29 100.0 32 ............................. ACGCTGAAGCAGCGCGGGTGGATCCGGCAGGT 71138 29 100.0 32 ............................. TCATGCGTTACGGCGAGGGCTGTCCGGTCACA 71077 29 96.6 32 .........................T... ACTCAGTTCCAGGGCGGGTTCTTCCCCTACAG 71016 29 96.6 32 ..........................T.. CCTCGGAGACGAGGCGGCGGCCCATGGCGGTG 70955 29 79.3 32 .........C..GTG......G...T... TCCCCGTCCACCGGGGGGATATACCGGCTCGA A [70939] 70893 29 79.3 0 ...T..T...T..........G...T.G. | A [70873] ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.3 32 CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Left flank : CCTCACGTATCTCCCACGCGTGCTCGTACGCCGTCATCTGCCGCTCGGTGTACCGCTTGATCTGAGAGGCATCCTCGACCTCCAGCTGCGCGGCCAGGTGCTCCACCACCGGCCACGGCACGGCCAGGGGGTCCTCCAGGAACAGCCCGATGTACCTCACCGTGCACATCTGGAGAGCGAAGCCGAGGCGGTTGTGGTGACCACGCCGCTTCGCGATCAGCTTCCGGTCCTCGTCATCGAGGAAGAAGAACCGTTCCAGTTCAGGTCTCGTCGGCTCATCCGCGAACGATCCGAACGCGGTGGCCTGCTCATCAGTCAGAAATTCCACGGGCATATCGCGGACGTAACCAGCCGCAGCGACCGAACGCGGATCTTCCGCTGAACACCCCCGACGAGCCGATCGTGTGTGCTAGACGATCAAGATCAAGTGCTTAGCGCTAATGGCTGTTCCGTTGGTCCCCAAGGCCGTGATCGTCCACGAGCTGGTTCACCACGCGCAG # Right flank : TACGGAGCCTTCCCGGCACAACCGTTCTTCGCGCTGGGGAGAGCACTTACCCCTGGGCGCGGACGAGCAGCGTGCCGATTTTCCTCGGGCCGGGAGGGGCCGGGAGGATTCGGGCGGATGCGGCGGTGAAGCCGTTGGCCCACAGCAGGTCCTTCCACTGGTCGGGTTCGTAGTCCCATCTCTTCACGACCAAGGGGTCCTCGTTCTCGGACTTGGTGATGTAGGAGGCCTGGCAGCCGTAGCAGCCCTCGACCGGCGGACGTTGCGAGAAGGCGAATACCCCGCCTGGGCGCAGTCTGCGGCGTACGGCGGGGAGGAGGAGGGCGGGGTCAGTGAACCATGCTGCGCCGAAGACGGAGAACACGGCGTCGAACTGCTCCTCACTCTCGGTGAGGAAGCGGGTGGCCTCCGTCTGGTGGAGCTCCAGCTTGCTGTTGGGCCAGCGGGCCTCGGCGGACTTGATCTGGGGCATGGAGATGTCGACGCCGACGGGGCGTGCG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 80782-78922 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ819156.1 Streptomyces sp. CS014 scaffold00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 80781 29 100.0 32 ............................. CCGGTAGGCGGCCACTGTGGCTCTCCTGACGC 80720 29 100.0 32 ............................. TCGGCGAAGGTGAGCGTCGCGTCATGCCGCTT 80659 29 100.0 32 ............................. AGCCCCGCGACGGCGGTGTGGAGCCGCGTGAG 80598 29 96.6 32 ............................T TGAACGGCCCGGCTGGGTACGGCTGTTGAGCT 80537 29 100.0 32 ............................. TGCCTGCCTCCTACGTGGCGTTCGACGTCCTG 80476 29 100.0 32 ............................. TTGCTGTGCGGGATGCCCCACCGGTCACAGAG 80415 29 100.0 32 ............................. TCGGCCGGGACTACCTGCCCGCCCGCCGCATC 80354 29 100.0 32 ............................. TCGCCGGCCAGGTACTTCTTGAAACCCTCGTT 80293 29 100.0 32 ............................. CGGGCGACGACCACGCCGCAGAGGTCGCAGCG 80232 29 100.0 32 ............................. AGGCGCAGAGCTTCCTGCTCGACCTCACCGTG 80171 29 100.0 32 ............................. ACCACGGAGGGCCCGGAGCTGATCAGCCCGGA 80110 29 100.0 32 ............................. ACGCAGGCCATCGGCACCGCTTCGGGGCGGCT 80049 29 100.0 32 ............................. AGCCCTAGGAACTGGGCCCGGAGGTCGGTGAT 79988 29 100.0 32 ............................. CCGCGCCCCTGCCCGCCGCCTGACCCCTGTCT 79927 29 100.0 32 ............................. CGGCTGCGTGGATACGGCTGATCCGGGACCGG 79866 29 100.0 32 ............................. ATCGAGGGCGCCTACATCGCGCTGCTGGAGCT 79805 29 100.0 32 ............................. TCCGCCACGGGCGACAGGTCGTTCACCCGCCA 79744 29 100.0 32 ............................. CCCACCTCGCGACGGCTGGACTCCACGCCCGG 79683 29 100.0 32 ............................. GACGACAATGCACTGACGGTCATGGACTGGTT 79622 29 100.0 32 ............................. CTCTTCGGGTCGTCCTACGGCTACAGGTTGTT 79561 29 100.0 33 ............................. CAAGGGGTGGCACGGGTGGCACGGCACTATGGA 79499 29 100.0 32 ............................. CCACACGACGGCCGTGTGACCGCCCAGCACCT 79438 29 100.0 32 ............................. CCCGACGTCTAAGCCGCAGGTCAGGGGCCCGC 79377 29 100.0 32 ............................. AGCAGCGGCCAGCGGTAGAGGAAGTGCCCCCG 79316 29 100.0 32 ............................. TTCATACGGAGACGAGCACGGTCTTCGTTAGT 79255 29 100.0 32 ............................. GCCCTGTGCGAAGCCGTCGCCGCCGCGCTCGC 79194 29 100.0 32 ............................. TGATCGTCCACGAGCTGGTTCACCACGCGCAG 79133 29 100.0 32 ............................. GACAAGCGTCCGGGGGACGAGCTGGCTCCGGA 79072 29 100.0 32 ............................. CCGGGCAGCGCCAGCCGTCCCGGGTGGCCGTC 79011 29 100.0 32 ............................. GACCCGCGCATCTTCGCCGCGATGTTGAACTC 78950 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.9 32 CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Left flank : GAGCGACAGAGGCCTGAATGTTGCCTCCGGAGTGAACTACGGAACGGACGAGCCAGAGGCAGCGACCTGGTGACCGTGATCGTCCTCACCAACTGCCCTCCAGGCCTTCGGGGCTTCCTCACCCGGTGGCTCCTGGAAATCTCCGCCGGCGTCTTCATCGGCAATCCTTCATCCCGCATCCGAGATGTGTTGTGGAACGAAGTCCAGCAGTACGCAGGCCAAGGCCGTGCACTTCTCGCCCACACGACAAACAACGAGCAGGGCTTCACCTTCCGTACCCACGACCACGCCTGGCGCCCCACCGACCACGAAGGCCTCACCCTGATCCAGCGCCCCAACGCCACTACCGACTCAACGAAGAGCGCCACGAAGCCAGGGTGGAGCGCGGCGTCCAAGCGACGCCGCTTCGGAAGAAGGTAGACGAAATGTTACTTTTGTCGGAATCGATGAAAGTGCTCGAGAATCTGCCCAGCCCACGGTAAAGCCGCAGGTCACCGAGT # Right flank : TGATCCGGCCTTGGGGACCAACGGAACAGCCATTAGCGCTAAGCCGGTGATCTTGGCCCCTGGACCGTCGACCACGCGCCACCGCCCTCAGTCCTCATCCCCCGCTGTCGTCTCGCTGATGAGCCGTAGGGTCGGGCGTTGGGGGGCGAACTCGCCGAGTTCCAGCGCCGCCTCGCGCCAGTTCGCGGCGAGCTGGCGCAGCCGTTCGCTGTCGTGGCGGTAGCCGGGCGGCGGCGTTGGTGCTGAGCTGCCCCTTCTGGGCTGACTACGGCGCTCGATGATCACGCGAACTGGTTATCGCTGAGGTTGATCACGCCTCCTGAGCTGGTCCCGAGAGGCGGGCCGTGTCCTTCCAGCCGCCGTCGCCGTTGGTGGGTCGACGCGTGCATACGCGTCCATTGGGTTGGCCCCCGATTCCGTGCTCTCTGGCGTGGGGGGCCTAGTCAGCTTTCCCCGACGAAGGTCCTGGTCTCCCTGAGCGGTCAGGGACGGCGTCAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 90413-94038 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ819156.1 Streptomyces sp. CS014 scaffold00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================================== ================== 90413 29 100.0 32 ............................. CGGCCGTTCGCCGCGGACCTGGCCTTCGCCGT 90474 29 100.0 32 ............................. AGCACATCGACGGTGAACGACACCGAGCTTGA 90535 29 100.0 32 ............................. CACCGACCCGCAGCTGGTCCGCCTGGTGCGGA 90596 29 100.0 32 ............................. CCGTGCCACCCGCAGTTGTCGATCATCACCCG 90657 29 100.0 32 ............................. ACAGCCGCAGATCGTCAAGGTTGAAGTGGACG 90718 29 100.0 32 ............................. CTCATGCCCGAGCCCATCATCCCGACCCGGAT 90779 29 100.0 32 ............................. GCACCATCGAGCCGCGGGTGGTCCTTCACCCA 90840 29 100.0 32 ............................. GCGCGACGAACCGACCGGACAAACGAACCGTC 90901 29 100.0 33 ............................. ACCGCATCGCCTGGCGCACCACCACCGTCACCA 90963 29 100.0 32 ............................. TTCTGAACTTCCGCCACGAGCCGGGCCCCGCG 91024 29 100.0 32 ............................. AGAGGCATTTCCCATATACCACCTGCTACACG 91085 29 100.0 32 ............................. CGGTACGGGTCATCCGACGCCTTGCCGAAGTA 91146 29 96.6 32 ............................G GCCACCGCCCCCGCTCCGGGGTGGTGGCCTTG 91207 29 100.0 32 ............................. ACCCCGACGACCAGCTACGACACCGCCGCCAG 91268 29 100.0 32 ............................. GCCTGGCCCGAGGTCGCCCGCCACTACGCCGA 91329 29 96.6 32 ............................G CCGAGAGTGTCCGCGGCCGAGACCGACAGGTA 91390 29 100.0 32 ............................. TCCGGGTGGGCACCGGCCCCGGGGGTGTAGCC 91451 29 100.0 32 ............................. GATGACCGCACCGAGTTGCGGAGACCGTTGAC 91512 29 96.6 31 ............................G GCGCGGAACTGCATTCCCACGATCGCGGCAG 91572 29 100.0 32 ............................. GCCCTGTCGAGCATCGTCGCCGCCGTCCCGCC 91633 29 100.0 32 ............................. ATCACCTGACCCCCTGATCCAACGGCCGGAGA 91694 29 100.0 32 ............................. GGCCGCCCCGACCACGCCCGCGCCCGCCGCAT 91755 29 100.0 32 ............................. CGTCGCCCGGTACCGCGCCCGGGTCCTCCGGC 91816 29 86.2 57 .........................NNNN NNNNNNNNNNNNNNNNNNNNNTCCCAGGCCGGTGACGGTCTTCATGTCCAGGCCGAG 91902 29 100.0 32 ............................. CCGGGCGGCGTTGCCCATGTCGGTTTCGGTCT 91963 29 100.0 32 ............................. CGTTGGGCGGCCCACAGTTCGAGGAAAATCAG 92024 29 100.0 32 ............................. GATACGTAACGAAGCCCAACGACGCAAGGTGA 92085 29 100.0 32 ............................. TCCCGGCACGACGCCGTGCCCTGATCCGTCTC 92146 29 100.0 32 ............................. CCCGGAGTTGCCCGCACGTATGCGGCCACGTG 92207 29 100.0 32 ............................. AGGGGTTGCAACCCTAGGGTTGACTATCTCTT 92268 29 100.0 32 ............................. TGCATCGACGACCAGTCCGACCCGGCGTTGCG 92329 29 100.0 32 ............................. TGCCCGAGGACCAGGCCGAGAAGATCCGCCGG 92390 29 100.0 32 ............................. ACGGGAGTAGGCATGGGTTTCAGGTCGTCGAT 92451 29 100.0 32 ............................. CCCGACACGGCATGAGCGGCTCGATCCGCCCG 92512 29 100.0 32 ............................. GAGCCGGAGACGTTCACCGAGTCGCCCTTCGC 92573 29 100.0 32 ............................. AGCCTCGTCGTACACACCGACCCCGGACGGCG 92634 29 100.0 32 ............................. GCGGCGATCATCGCGACGGCGGCGGCACGTCC 92695 29 100.0 32 ............................. GAGCACAATTGGCCCATCAAGCGCGAGTTCAG 92756 29 100.0 32 ............................. TCGTCCTGCATGCGCTGCCGTGCTACCGCGTG 92817 29 96.6 32 ..........................T.. GCCGCCGGGTTCCACGCCCTGCGCTCCCCGGT 92878 29 96.6 32 ....C........................ TCGGACTCCGGCCCGGCGGACACGACCCCGTC 92939 29 96.6 32 ...............C............. GCCGCCGTGAAGGCCATCGCCCGCTCGCGGCT 93000 29 100.0 32 ............................. CAGTACGCGAAGGTACCGAATCCCTTCTCCAA 93061 29 100.0 32 ............................. GAACGGACCCCGCCGGGGGTGGCGGGGTCCGT 93122 29 93.1 32 .......T..............G...... GCCGCCATCCTCGGCACCACCCCCCGCGACTA 93183 29 93.1 32 ........T...................T GCGGTGTCGGCGCTGATCACCATCCTGCGGCG 93244 28 82.8 33 ...........A..T..A.......-..G TACGTCGGTGTAGGTGTGGGACGGGCCGGTGCG 93305 28 72.4 29 .......G...-.A..A.CATG....... TCCGTGGTCGCGGACAAGAGGCCAGCGTG 93362 28 79.3 131 ...T.......A.....-..T.G.....G TACTGTCGTCCGCGTTCGAGGTACTCCACCACGGTGCGCGGGCTATAGGCTCGATGCCCACGGCATCAGCCGCACGGAGGCGGAGCCAACTTCATGACCGAGCCCAGGCGCAGGGTCGATGAGCGGCAGAC C [93386] 93522 29 89.7 32 ...........A.GT.............. GGCAAGGACTTCGCGCCCCGGTACTTCCGGCC 93583 29 89.7 32 ...........A.GT.............. TGGCCACCGTCACCTACGTCCACGGCGCGGGG 93644 29 86.2 32 ...........A.GT....A......... TCCCGCCTGCCGGGGGACTGGGTCGGCCGCTA 93705 29 86.2 32 ...........A.GT....A......... AAGACCCGGCCGCGGTACTGGTTCCTGCCGGG 93766 29 96.6 32 ........T.................... ATGAACATCATCGGAAGGAGTCCGAGCACGGC 93827 29 100.0 32 ............................. CGGGTCTGGAACTCGCACTCCTCGGCAAGCTT 93888 29 96.6 32 .................A........... CGACCCGGACGACGACGAAGAACCCCAGGCCG 93949 29 96.6 32 ....C........................ CGGCATCCCCACCGCAGGCGAGGCCGGGTGCG 94010 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= =================================================================================================================================== ================== 58 29 97.0 34 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CGTCGCCTTCCCGATGTCATGCACCCCAGCCAGCCACACCACCAGCCGCCGGGCATCCTCCATACCGCCGGGCAACGGCCCCGCGATCACATCCCGAACCTGCTCAGGCAGCCACTCGTCCCACAACAGCCCCGCCACAGCGGCACTGTCCTCCATGTGCCGCCACAACGGCAGCCAACCCTCCGCATCCCGGTCGTGCTTCGCCCACACCCGCCGAACAGCACCCTGCAGCCGCCCCCCAAGGCCCGAACAAGCCCCACCGTCATCAGCCATGCCAGATAAATACAGGCAAACAACCGAACAACACGCCCTGATCAGAAAATCTGATGCTTTTCCACCGACCACAGCACGTCAACCGACAACCCGCCGTACGATGCGCCGACGTCATCCGCGACCCAACACAACAGGCAAGAAAAGATGGCAAAATGATAGATATGTCGGAATCAGTGAAAGTGTGTGAGATCTCTATCCTCCCGCTGTAACACAGCAGGTCAGGAAGT # Right flank : CGCGCCCGCGGGGATGGTCCCGAAGTACCTGTCCGCCGGCTGCCCCGGTTTCAAGGCCCTGCTCGGCGATCATCCGGCTGACGGCCGCGCCCAGGGCCACGGGCTCCCGGCCCCCGGAACGAGCCTGGCGGGACGGGGACGCTCCGGGTACGGCGAGGGCGCTGCCGCGGTGCGGACTTCGCGGCCGCGAGGGCGGCGCGGAGCGCGACCCGGGCGAGGTCCACGCCGCTCGCGGCCGCGGGTGCGGTGTCGGTCATGCCGCAACCCTTTCGAGGAAGGCGGCCATGTCGGCGGCCGCGTCGGCGTCGGTCAGGTCATCGAGGCCCTGCTCGGCCTGGCGGGCGGAGTAGGCGGCCATCCCTTCGGCCAGGCCCCGCATCACGTCGAGCACCAGCTCCGGCCGGGACACGGTGAATGCCCTGGTGGCGGCCGCCTCGTCCCAGCCCTCGGCCGCTTCGTACGCCGCCGCAGCGTGCTCGGCGGCGGCCTGCTGCGCCAAG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //