Array 1 61318-62892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIQP010000215.1 Anaerobutyricum soehngenii strain SL6/1/1 scaffold_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 61318 33 100.0 34 ................................. AAAAATTCAAATTAATCAAGGGATTATAACATTT 61385 33 100.0 35 ................................. ATCTAGCCGCTATGTATGGGCAAACTGGGTGCAGG 61453 33 100.0 34 ................................. GTTTCGGAAGCAACTACATATAATTCTGGCGATG 61520 33 100.0 35 ................................. TCATCGTGGAACTACGCAGTAGAGGACATAAGGTC 61588 33 100.0 33 ................................. ACATCTCCACCAACAGATGATACAGCCGCAGAA 61654 33 100.0 34 ................................. ATATGGCAGTAGCAACAGAAAACAAGCCGAAAAG 61721 33 100.0 33 ................................. TTATGCTCCATTTGTAGACAAAACATATGCATA 61787 33 100.0 33 ................................. AACCGAGCCACATTTTTGGTGGAATGCACAGAG 61853 33 100.0 35 ................................. TTGCCCGCGGATACAACGAATTGAGCAAAAGCATT 61921 33 100.0 33 ................................. GTAAGAGCAGGTTATGCAGGTTTGGCAATGCAA 61987 33 100.0 35 ................................. TGATTGGATTGATAGATATGATATATAGGAATGGT 62055 33 100.0 35 ................................. ATGTATCCGGGAGACCCAAGTGGGATCCCGGCGGA 62123 33 100.0 34 ................................. TTTTGCCAAATAGCTGTACTGTATTGTCACTGCG 62190 33 100.0 32 ................................. TCCATATCTTCTTTCTTAGAAATATTTTCCGC 62255 33 100.0 33 ................................. AAATATGCAACTAAACCCTAACTGCATTCGTGA 62321 33 100.0 34 ................................. GGAAGTATAAAAGAAGACATGGCAGACATTCTGG 62388 33 100.0 34 ................................. GAAAAGTATTGCAACGAGCATAAATATTGCCGAA 62455 33 100.0 33 ................................. ACCTAGTTCGTTCCTACGATAGAAACAATACCC 62521 33 100.0 34 ................................. ACTATGCTGCAATTCCAAACTGCTTCAATCTCTT 62588 33 100.0 35 ................................. CTGCACCTCAAAACGGAGCATCTGGCATCACCTAC 62656 33 100.0 36 ................................. TCGTCATTTCGATAAACATATCGCCGTTACCAGTTC 62725 33 100.0 34 ................................. TTTCGTATGCAGAAAGGAAAACACGATGATTGTA 62792 33 100.0 35 ................................. GATTTTAGTAATTTTGATACTTCAAATGTAACTAA 62860 33 93.9 0 .............T...........A....... | ========== ====== ====== ====== ================================= ==================================== ================== 24 33 99.7 34 GTCACATCCCACACGGGATGTGTGAGTAGAAAT # Left flank : CTTCATTTTTGCTTAAGTAATATATTAAAAACGAGGAAGTGAATAATAATGATGGTTTTGATAAGTTATGATGTAAGTACGACATCACCGGCGGGGAAAAAACGGTTACGAAAAGTTGCAAAAGAATGTCAGAATCATGCCCAGAGAGTTCAAAATTCTGTTTTTGAGGCAGATTTAGATTATTCTTCATTTTTAAAATTAAAAGAAAAACTTATGGATTTAATAGATAAGGAAGAGGATAGTCTTCGATTTTATTATTTGGGGAATAATTGGGAGAGAAGAGTAGAACATATAGGTGCAAAGAAGACATATAATCCAGAAGGGGTTATAATCATTTGATTTTTAAATGAAACAGGCGAACTACTGGTGATTAAAAAAATCTAGGAGGTTCGCTTGAAAAAAATCCGTTTTAACGGTAAAATTAATATAATTCTAAATGAATTATAGGTCCATCCTGTAATATATGGGAATAATGTGATTGAAATATACTATATATAGCG # Right flank : TGAAATAAAAGTATTGAAAAGGTAAACATTATTTGTTCAGTGGTGGGGCTAATTCTCCATTTGACAATTATATGGAAGAATTGCCAAGATGTGCAGTAGAAGTATATCATGTGTTACATTTTTGAAAAAATAAAAAAAGTGTTGACAGTTTTCAAGGGGTATAGTATAATAAAATTCGTTGATGACGTGGGATCTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGTCACAGGTTCAAGTCCTGTAGGTCCCACTTATTTTTATCAATATTTATGGCGGGATAGCTCAGTTGGCTAGAGCACGCGGTTCATACCCGCGGTGTCGCTGGTTCAAATCCAGTTCCCGCTATTTTTTATTGCATTTAAGCCGGACATATGTGGTTTGATGTATGGTTTTGGACAGTGGAAACGGATAGATACTTATAATTTAATAGACGAACGGACAAGGTCATTATGCAAAGCTGCCTCGTATTCTACACAACTTGTGTTGATA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACATCCCACACGGGATGTGTGAGTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 14065-14758 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIQP010000164.1 Anaerobutyricum soehngenii strain SL6/1/1 scaffold_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 14065 29 96.6 35 ...................A......... TTCTCCTCTTCCGTATCACATGAATAACAGAATTT 14129 29 96.6 36 ...................A......... TTTCTCCTTCCTTTTATATGTATAAACTTTAATTAC 14194 29 96.6 39 ...................A......... GAATATCACGGTTTTTAAAAGTGTATAACCGGTTACAAG 14262 29 100.0 38 ............................. CAAACTGAGAGTATCCAAAGAATAGAATCATTGAACCA 14329 29 100.0 37 ............................. CTGCTGTCCCATTTAGGATCAATATATAAGGTTACAA 14395 29 100.0 38 ............................. ATCATTTTGATATCCTCAATTCTCCATACGTTTTTAAA 14462 29 100.0 37 ............................. TGTAATCTCCGGATGTATTTTCATTACCAATTACCAA 14528 29 100.0 41 ............................. TTTTTGTAACTCATCAAAGAGATTATCATAATCATAATCAG 14598 29 100.0 36 ............................. ATAGACTGTTCGCCGTATTTGCACATAGCGGACTTA 14663 29 100.0 38 ............................. CTATCAGTAACATTACTTGTATTAAAATTACTTAAATC 14730 29 93.1 0 .....................C....A.. | ========== ====== ====== ====== ============================= ========================================= ================== 11 29 98.4 38 GGATTACATTACCTATGAGGGATTGAGAC # Left flank : TTTGTCGAAAGATCCAGCTTTATATTATTATGAATATATGGATACATCTAACTTAAATTCAGACAGGGGCAATACAACACAAAAGGGAAAAAACAGAAGATGATAAAAAGGGCATCGGGAACTGTGTCGATGCCCTTTTTTGGAGCGTGCCCATAGGTAGTGTTAGTACTTCTCACACTATATAAAACATGAGAAAAAATAAGAAAAAATAATAATATTGATAAATGTAAAAAAGTCCGTCGACCTCTAATTCTGCATGAACAGTGCGTTTTGGATAGATTATTTAAACGGTATTTCATCAAAAAAGTAAAAAAATTATGAAAAATGACTTAAAAAGTCTGTCGATCTATTTACATAATTAACCAAAGGTAAAAAACGTAGAAAATAAGCAGAGTTTAAGAAGAATAAGCATTGGAGGTCGACAGACTTTTTTGCAAAAAATGGGTTGAAAATGGAAGAAAAAAGAGATATTATAATACCAAGAGCTGATAAAAACAGTT # Right flank : CTTCTTCAATTTCTTTTTTTAAGAACTACAATTAAATATAGACATAAGATATGAAAGATGGTGGGATTGTGACAGAAATTAGTCTGGAGGCTATTTTTGATGCAAAAAATCTGCAGAGAGCTTTTGAATCTTTTGAAGGAAAAAGAGATACCTGTGGAGCAGATGGTGTCATGGTATCAGATTTGCCGGAATACTGGAATGCAAATCAGGTGGTGATTAAGGATACGATTTACAGTGGGAATTATAGTCCGGGGATTGTAAAACAACGAGAAATCGTTTCTAAGATTGGAAAACATAGAATCATTTCTCAGATAAATACGATAGACAGATTTCTATTGAGAGCAATGGCACAAGTTATATCAGGAAGGCTGGATTCAGAGTTTTCAGAATATTCTTATGCATATCGGGAGAATAAAGGAACACTTGCGGCAGCAGAGCATGCGGCTTTTTGTATGCAGGAAGGGAAAAGGTGGAGTGCAGAATTGGATATTCAACATTTT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATTACATTACCTATGAGGGATTGAGAC # Alternate repeat : GGATTACATTACCTATGAGAGATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 16526-16232 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIQP010000402.1 Anaerobutyricum soehngenii strain SL6/1/1 scaffold_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 16525 33 100.0 33 ................................. TCTTGACCATCGTGCGCCCAGAAAATCTGTAAC 16459 33 97.0 32 C................................ ACTCGTCTCTTCGTAGCTATACCCTAGTGCCC 16394 33 97.0 32 G................................ AATTAGTCTCAAGCGGTACTGACAGTGGAGAG 16329 33 93.9 32 T.............T.................. TCCGATATTCATCAAACCGCAAAGGCTATTGT 16264 33 87.9 0 T...........T......T..A.......... | ========== ====== ====== ====== ================================= ================================= ================== 5 33 95.2 32 AGTCGCCTCCTTCTCGGAGGCGTGGATTGAAAT # Left flank : AGCAACCAAAAGAGATCGATATAGACGATACGGATCTGTAGATTTGGTGTAGACGAAAAAAGAAATACTACCCTATCCCATCTGCTCTGTAATCGCTGTGTTTAAAATGCTCATCCGCATCCTAAACACGCTCCGAAGCCGCATCTGGGATAGGGTAGTATTTCTTCTTTCTGGCTAATCGAAATCTACAGTTGGTGAGAATGAGGATTGTCCAAAATCCCTTTTTCGAAAATCTTTCTAAATTTAGATATAGTCAAATGTAGAAAGAAAAAGTTTCTTATTATCTTATCTTCGTTAAAAGGAATACCTTGAAATAAAATATAGAAAATATTAAAAATTAAACATAGCGCGAATCATAAGCTACGCAAAAAACGCAGGCCATTCGCACTTAAAAAAGGAAAAATAGTATAACATATTGCGATATAAAGCTAAAAATAGCGAACAAAAAAGTTGTTGAGACTAGATATGTACATGATAGCTGAGGTATCACAATATGTTGC # Right flank : AGCTATAATTCGGTAAGATTTTTCTATAAAAAGGAAAAAGATGGCTAACGACAACCATCTTTTCCCCGTTCCATGTTATAAAAAAGTGATGGAGGATTTGGATTTTTCTGGCTTGTTAGCCAACTGTTCAGATAAGGGAAGAACTAGGTTTAACCCAAGTATGATGTATGCTGTCGTTACTTACGCAAATATGCGTGGGGTAAGAGCTGTTGACCGTATTGTGGAGTTATGTGAAAATGTGAACCGCTATACTTGACTGGACAGATTATGATACATTGATCCCTGTGTTAGAAAAGCACAAAAACGCATTTGAAGAGATTTTGTAAGAAGTAACTGCAGACAGTGGTTATTGCAACGGCTGCAGATACAAAGCAAGATGTCTCTATAAATATGATGCTGAAAAAGATGTAGAGAAAAATAAGGTCATGAAGATCAATGAACAATGGGAAGCTTTAAAAGAGGAAGCCCATACAAATATATAGAGTGAGAAAGGAATATTG # Questionable array : NO Score: 6.83 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCGCCTCCTTCTCGGAGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.10,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9504-8942 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIQP010000179.1 Anaerobutyricum soehngenii strain SL6/1/1 scaffold_82, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 9503 33 97.0 32 A................................ CGTTTCGGTATTTTCCGATGTTTCCACCGCTT 9438 33 100.0 35 ................................. AGCAATACCAAACAGAGGTATACACAAGGGTCTGA 9370 33 100.0 35 ................................. ATTAATGCAAGACGTTTTGCAGAGATAGAAGGAAT 9302 33 100.0 33 ................................. ACATGACCCTTTAAAGATTCAGCGATACTCACG 9236 33 97.0 31 A................................ AAGAATAAACGCTAATTTACGATAGATAGTT 9172 33 100.0 33 ................................. CCATATGCTAGAAAACTATCTCTGGCACTGTTA 9106 33 97.0 33 T................................ ACTGGATCAATCTGCTCCTGCACCTTCCGAACC 9040 33 97.0 33 T................................ CTACATATGTATTTCCAGTTTTAAAATAAAACC 8974 33 97.0 0 T................................ | ========== ====== ====== ====== ================================= =================================== ================== 9 33 98.3 33 CGTCGCCTCCTTCACGGAGGCGTGGATTGAAAT # Left flank : GGAGCGTTTATCTCAGTCGGAGATTGGACTCCCACTGAGACAAATTTGCTGTCACTCACCACCTGAAAGAGGTGGGAGTCTTCTCGACTGAGATAAACAATCGTATCTGCGATAAAATCCCTTTTTCAAAAATCTTTCTAAATTTAGATATAGTCAAATGTAGAAAGAAAAAGTTTCTTATCATCTTTGTTAAAAAGGAATACCTTGAAATAAAATATAGAAAATATTAAAAATTAAACACAGTGCGAATCATAAGCTACGCAAAAAACGTAGGGCATTCGCACTTAAAAAAGAAAGAATAGTACAACATATTGCGATATAAAGCTAAAAATAGTGGACAAAAAAGTTGTTGAGACTAGATATGTACATGATAGCTGAGGTATCACAATATGTTG # Right flank : AGGTAATCCGCACTGCAGTTCTCGTTGTTGTTACATCGTCTCTTCGCAGAGATAACAATTACAATTTCTTACAAAATAACAAATATATTGATGAAAAATTCTACAAACATTTTATGATGGCAGTGCTATTTGACTGCTTTGCCTTTGTATATTAATTTTAAGCATGTCGTTCTTATAATAAGCATCTTCTTTAATTTTTCTTTTTCAAAAAGAGCATAAAAATAACACGTCCGATATATCGAGCGTGTTTGAAAAACATTTTAAGTTGTTCATTTTAACCAAATTAATATTGAGGTGATGCATATAAATGCTGCAAAAGTGGATGCTAATTTATCATAACGCGTGGCTATTCGACGGAATGCTTTTAACTTGAGAAAATAGTTTTCCACTAAATGTCTTTCTTTGTAAAGATGCCAGTCACAGTAACGGTCAAATTTAGCCCCTTTTCTGGAAGGTATGGTTAGCTCACCACCATGGGCATAGATATAGTCCATTAATTT # Questionable array : NO Score: 8.98 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCGCCTCCTTCACGGAGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.10,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //