Array 1 28976-27817 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBZC010000013.1 Pseudomonas aeruginosa strain PA15-32 NODE_13_length_188256_cov_84.498196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 28975 30 100.0 36 .............................. TCCATCGCCATCCAAGTAGTCTGAAAGGGTGGCCGT 28909 30 96.7 35 T............................. AACAGCGCAGAAATCAGCAAGGAACTCTACGACGT 28844 30 100.0 36 .............................. CTCAGCGAGACGATGCTCAAAGTCATTCACGAAGGT 28778 30 100.0 36 .............................. TCGCCGAAGGCCTCGATTTCGACCGGCTCACCAAGT 28712 30 100.0 36 .............................. AATGACGCACTCGCCGGCGCCTACAGCTATGTCCGT 28646 30 100.0 35 .............................. GCGAGCTTAGCCACCAGCTGCTCATAGTAGTCGGT 28581 30 100.0 35 .............................. TATTACGGTTCTGGGTGCAGCATCTGCGGGGGTGT 28516 30 100.0 35 .............................. TCGCCCTGGAGCGTGAGCCTGGTTGGTGGATCTGT 28451 30 100.0 38 .............................. GTCAGCAGCCGGGCCTGGAGCGTCACGCCCTGGCTGGT 28383 30 100.0 38 .............................. TCGACGCTGCTACTCAACGCCGCCGGCCTACCCGATGT 28315 30 100.0 37 .............................. ACGGCGACCCTAGAGTTGCGTGAGCGCCCGATCCTGT 28248 30 100.0 37 .............................. TCCGCTACCACGGTGGCAAGTGGCTGCTCGCCCCGGT 28181 30 100.0 36 .............................. CTCAAGGGGCTGAGCGGCATGGTGGTCCTCTCCGGT 28115 30 100.0 37 .............................. ACTGCGGGAACCGTCAATGGCGCTGGTCAGACTGGGT 28048 30 100.0 37 .............................. GGCGAGCAGTCTCGGCAGGAGTCGAGTATCCAGGCGT 27981 30 100.0 38 .............................. AAAAACGCTCAGATCAAGCGCTATCGCGCTCGCCTGGT 27913 30 100.0 37 .............................. CCGTCGCCGGTGATAACCGTGTTCGTGAATCTGGAGT 27846 30 83.3 0 .......TA.G............G.....G | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 98.9 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGGGCGCAACTCTCTAGCTGATTGATTTATATACTCTTTCTTTGAGGTTAGGAGTTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAAAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : ATAGATTTTTGGGAGTTTGTCCTGAAAAGTTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGCAACTCTTGTGTCACGGTGTCGCGGCCCCAGGCCGAAAGAAAGATCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGACTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCGAGGGGCGGTGAAGCCCCTCGGGGGTGTAGTCCAACTGGTGCAGGGGAGCGTGGTGGTTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTCAGCCCATCGTCTTGGTGCAGCGGCCCTTGGCCGTTCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCCGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACAGTTGGTCCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 115473-114185 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBZC010000018.1 Pseudomonas aeruginosa strain PA15-32 NODE_18_length_115604_cov_70.347772, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 115472 28 100.0 32 ............................ CGAACTCACAATCCTTGCCGCCAAACTTCAGG 115412 28 100.0 32 ............................ AGTTCGTTCTTTTCCCACTTCAGGCCGAACTC 115352 28 100.0 32 ............................ AGGAGCTGCAACTTCTTCCGCCGCCGCTTGCT 115292 28 100.0 32 ............................ TGGAGCTTCGCAAGCCGCGTGTGCCGGACTTG 115232 28 100.0 32 ............................ GTAAGGTGGTGCCGTGTAGCAGTGCTCACCGC 115172 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCCGGCTCCAATAC 115112 28 100.0 32 ............................ TGAAGGCCAACCCGCAAGTCAGCAAGGGCATC 115052 28 100.0 32 ............................ AGGTTCGTGGCGGACCGGAAAGACCTCAACCG 114992 28 100.0 32 ............................ CTGGACGCAAGCAAGATCGTAGGGCGCTGCCC 114932 28 100.0 32 ............................ ACCACCAAGATGGTCCAGGCCGTGCGTTCGAT 114872 28 100.0 32 ............................ GGCCAACCAGATCGTCTACACCGCCAACGTGA 114812 28 100.0 32 ............................ TTGATGGGTTCGTACTCAGGCCCGGAAAACTC 114752 28 100.0 32 ............................ TTCCACCCCGAGCAGTTCGATGTGCTCGAGGC 114692 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 114632 28 100.0 32 ............................ AGGTCTTCGAACTCGAACAGCTTCGCGAACTG 114572 28 100.0 32 ............................ TCCAATGCGGCGCGTACTGCCCGCGCCTGCTT 114512 28 100.0 32 ............................ AATGCGTGTCGAGCGTTGGTGCTGGGATGCCG 114452 28 100.0 32 ............................ AACCAGCGTGTCGACGCCGAGGCCCAGGCACG 114392 28 100.0 32 ............................ CTCGATGACGCATATCGCGAGGCGCTGGCCAA 114332 28 100.0 32 ............................ TGTGTACCCCTGCGCGTGGAGCGCGGGGCGAC 114272 28 100.0 32 ............................ GTCATGGGCGAGCTCTACGCCAACCCGCAAGC 114212 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 22 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 63830-64638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBZC010000019.1 Pseudomonas aeruginosa strain PA15-32 NODE_19_length_113518_cov_64.070698, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63830 28 100.0 33 ............................ ACGTTGCCCCCATCCTGACCATCAACGGAGCAA 63891 28 100.0 32 ............................ GGTGACGCTGCACATCGTCGCCGCCGACTTCA 63951 28 100.0 32 ............................ AATCAGATCCCTCGCCGAGCGGCGCATCATTG 64011 28 100.0 32 ............................ AAACTCATCAGGCACCGGCAGCGCAATCAACT 64071 28 100.0 32 ............................ TGGCCGCTCGACCACGCCGGCATACTCACCGC 64131 28 100.0 32 ............................ TCAACAAACGCCACGGCGAACATGAACACGCT 64191 28 100.0 32 ............................ AGCCACTGGCATTCGAATGGGCCGGCCGGGAA 64251 28 100.0 32 ............................ TGGCGAAGGGCAGGGATGACAAGGGACAGCGT 64311 28 100.0 32 ............................ TTGTAGGGCGGCTGGGTATCGCTAACCATCAG 64371 28 100.0 32 ............................ ACCGCAATCCGTCAGTTCCAGTTCCGGGACAT 64431 28 100.0 32 ............................ ACCTCAAGCGGAAAGCAGATCGGCCGGACGTT 64491 28 100.0 32 ............................ AGGAACGCGACCAGGGCGCAGACGGCAACAAC 64551 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 64611 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCTCTGCAAAAAGAGGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 73721-73153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBZC010000019.1 Pseudomonas aeruginosa strain PA15-32 NODE_19_length_113518_cov_64.070698, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 73720 28 100.0 32 ............................ TGGTTCGGCAGCACTCAGACGGTTTCGCTCAG 73660 28 100.0 32 ............................ GTGCTGTCGGGACGGTGGACAGCGAGGGGATC 73600 28 100.0 32 ............................ TGCTACGCCCTGGCCGGCTCCAGCGCTCCGAA 73540 28 100.0 32 ............................ ACCAAGATCGGCCTGCGCGAATTCCGCGTCGA 73480 28 100.0 32 ............................ AATTGTTGAGATGCCGCCGAGCGCTGATCTCT 73420 28 100.0 32 ............................ AACCCGGCGGCGACCGTTGCTGCCTGGAATTC 73360 28 100.0 32 ............................ ACGGTCAGCTTGCGTTCCACGGCCGAGGTCAA 73300 28 100.0 32 ............................ ATCGCCGCCACCACCCGTTCCAGGCGTGCCGC 73240 28 96.4 32 ...........T................ TGAAGGCAAGGGACGTATGGGATGTGCACTTC 73180 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.3 32 GTTCACTGCCGAGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGTAGAAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGAGGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //