Array 1 526893-528662 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEXA010000001.1 Burkholderia gladioli strain BCC1689, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 526893 28 100.0 32 ............................ GACAGTTCGCCGGTTTCTTGATCAATCGCGCT 526953 28 100.0 32 ............................ AGTCATGGTGCGGACGAAATATCAGGTCCGAG 527013 28 100.0 33 ............................ AGGAGCGGGAGGCGCGCGCCGAGCAGGAACGCA 527074 28 100.0 32 ............................ TGATCAACGAGGCGCGCGGCGTCAACGACCTG 527134 28 100.0 32 ............................ ACCAGATACGCCGCGATCGGGCTGCGCTTGTG 527194 28 96.4 32 .........T.................. GACGGAAAAGCAGTGGAACGCTAAGAACCCCT 527254 28 100.0 32 ............................ GGGAGTTCGGGCGAGGTGTGGGCGCGCGGCGG 527314 28 100.0 32 ............................ TCGTCGCACTGGAAATCGATCAGGTACTCGAC 527374 28 100.0 32 ............................ GCGACCGATGCGCGGTCCAGCGCGCGGAGCAG 527434 28 100.0 32 ............................ GATCACGGCCAGCACGATCCAGAGGGAAAATA 527494 28 100.0 32 ............................ ACTCGAAAGCCAGATGGCTGCCGAGGAAGTCT 527554 28 100.0 32 ............................ GTGTCCGGATCAGTCCAGAACGCCGACACCTC 527614 28 100.0 32 ............................ ATGCCGGACAGGTGCTCCCACTTCGCGCACTC 527674 28 100.0 32 ............................ ACGACGACGAGCCGAAATCGTCCATCCACACC 527734 28 96.4 32 ..................T......... TACTTGGACAGCCGGCAACCGCTTTTCTCGCA 527794 28 100.0 32 ............................ GCAGACTCGTGGCGGGATCTGGGGCGTCTACC 527854 28 100.0 32 ............................ TCCCGTATCAGCAGCGAGTGGGCCGCAAGCAC 527914 28 100.0 32 ............................ TGCGCCACGTTCTCGGCTTCCCGAATTTCCGC 527974 28 100.0 32 ............................ TCCTGGCGCGCGGTCCCCCCTCCCCGCCTGCC 528034 28 100.0 32 ............................ TACATCCTCGCATCCGAAGACGGCGCGAGCCT 528094 28 100.0 33 ............................ ACGTCTCGACCATCGATTGCGTGTTCGCTACGA 528155 28 100.0 32 ............................ TTCGAGAAATCCACTCGGCAGCTCGCCGAGGT 528215 28 100.0 32 ............................ TGTGGCAGCCCGAGAGTTCGGCGCTTCTTCAC 528275 28 100.0 32 ............................ GCTCGTGAACATGTCGTCTGCGTGGTATTCGA 528335 28 100.0 32 ............................ AAGCGCGGCACGCTGATCGTCGGAAATGCGGC 528395 28 100.0 32 ............................ AACGGAAGCTGCTCGGTGATTTTGAGGGTGAT 528455 28 100.0 32 ............................ GGGCAGAACCGACATGCACAGCCTGACGACCG 528515 28 100.0 32 ............................ AATCCAGAGAGAATTTCGATGCTCGGCGCGAC 528575 28 100.0 32 ............................ CAGGGAAGTGCACCCGAAAGTGCACCCAGGAA 528635 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.8 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : ATGGTTTGCATTCGCTGATGGCGCAGTCCTGGCTGCAGGGGATGCGGGATCACGTGGCGATCGCGACGCTGGCGCCCGTGCCGGACGGCGCGATGCATCTGGTCGTGCGACGACGGCAGTTCAAGACCAACGCGGACCGTCTGCGGCGACGACGGATGCAGCGCAAAGGGGAAACGGCCGAGCAGGCTGCCGCGCATATTCCCGATTCCGTCGAGCGTCGGCCTGATCTTCCGTATGTGCGTCTACGCAGCGCGAGCACGGGACAGGTGTTTTGCCTATTTGTCGAGCAGGGGGGCGCGGTGAGCGAGCAGGTGCCTGGGGCGTTCAATGTCTATGGGCTGAGCCAGGGGGCGACGGTGCCCTGGTTTTAACCCTTTTCTTGGGCTGATTTGGTTGGCCTTTGAAATCAATGGGTTAGCGAAAGGGCGGAAATTTGGGTGGTTTGCCCTTTCGCGCGTGTTTGTTGTTTGGAAACAAGGGGTTGGAGGGGGAAGGGGCTA # Right flank : ATTGTGCACCTATATGAACGCCGCGATTTAGCAAGCGGTTTTGGCGAGCAAAAGGGGCAGGGACGATAGATCGTTCCCCAAAATCTAGGGCGGATCGACTGTCTGGGATCGGCCACTTGCGGTCGTTCGACAGCGCTCTCGGGCGGACATTCGAACGTCAGCTCCGCTCAGCTACCAGACTCGTCCTGTCGAAATGTACCGTCCTGCATCGGCGGCCCAATTGAGAGACTCCAATCTTTCTCCTCGCCAGGGAAGTCGGGGTTGCCAATCACCAACCGGCAAGCTACGAGTTCGTGTCGCGGTGCTGGTTGTCGAAACTCCGCCTCGCTTCTCGGAAGCGGTCCGCATTCTCGACGATCCAGGTCCACAGCGGGACCATGCGAACGAGCAGGTCCATGCCCGTGTCGGATAACTCGTATTCGACTCGAGGAGGCACTTCGTCGAAATCGTGACGGAGCACCAAGCCGTCACGTTCGAGTTGTCGTAACGTGCGCGTCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 532191-532699 **** Predicted by CRISPRDetect 2.4 *** >NZ_CADEXA010000001.1 Burkholderia gladioli strain BCC1689, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 532191 28 100.0 32 ............................ TGCTGATGCGGGAGAGGCGGTGGGGATCGTGG 532251 28 100.0 32 ............................ TGCGATTGCGAGGCGATCGGAGGCGCGTAGAC 532311 28 100.0 32 ............................ CTTGTAGTTGACGCCGCGAAAGCTCGCGCCGT 532371 28 96.4 32 .......................G.... TCATCAATCGCGGCGCGCATCGCCTCGACTTC 532431 28 96.4 32 ..............G............. ACCAGTCGCGGCCCACAGAAACCAAAATCGCA 532491 28 100.0 32 ............................ AACTGGCCCGAGCATCTTCATGAACCCAGGCC 532551 28 96.4 32 .........T.................. ATACCGCGCGCTCGCTGACCAGGCCGCCACGC 532611 28 100.0 32 ............................ AGTCGATGCAGTCGGCGGCCGTGCGCCACGGC 532671 28 92.9 0 ...........T.C.............. | T [532695] ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.0 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : AATTGATCTGGGAGGTGCGGAACTTCACGAGTTGCTGGCGCAGCCGATGCAGAGCCAGCACGGCCTGTTGCGCCTCGCTCTTCACTGCTACCTTGTTGCCGGGTTGCTGGACTGCAAGCCAGATTGCTCGTGCATCCGCCGCATCGTTCTTGTTACCAATGTTGAATGCCTTGGCAAAGCGCGGGGCCATAAGGCGGACCTTGTGCCCCAGCTTGCTGAGTGATCGAGCCCAGTGCTGGGATCCTCCACACGCTTCCATGCCGATCAGGCACGGCTCGAGGTTGGCGAAATATTCGAGAAAGTTGGCGCGCTTAAGCGGTTTGTTGATGATTTCGCCGTTGCCGGGGGCGATGTAGTGGATCTGGAAGACGTTCTTGCCGATATCGACTCCCACAGGGATGGGATTCATAGCTGCCTCCGTTCAGAAGTACCGCATGCGTATGATGCGCTCAGTGCGCAGCGGCGTTCATCCCATCGAACTATGTTGCAACCAGCGAAAG # Right flank : ACTGCGATATGAAAGTCCGGCAGACGGGCAAGTTTTGCCTCCGGCGCGCGTGTTTTAAAATCGTAGCGCCAACGGCATCGTCACCGAAGTCGTTGATATGACGAGGCATCCTCGCAGACTGGCTCGAATACCGAGTCGTCCGCGATTCGCGCATGTTCGCACTCGATCGCGGCACAGGCAGCGCCACAAACCAGACACAAGACAGGACAACAGGCCGATGACATTCAATCGCAAGATGGCGCAGTGGACGGCAGCCGCATTGGCCATCACCTGCCTGCAGGTGACCAACGCGAACGCACAGACCTTGAACATACCGCTCGGCACACCCGACGGATTCTCCGCATCATCGATCAAGAACGTGGGCCAGGACCGCTATTGCATCAGCGGCCGCGTGTACGACGACGCGGGGCCGAGCAACACGGCGATGGCCGTGCTGGTGGACGCCCGGCATCGTACCGTGTCGTGGAAGACCTCGATTCCGCATCCGCGCGACTACGCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //