Array 1 861008-859941 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMS01000001.1 Cronobacter malonaticus strain cro645W contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 861007 29 100.0 32 ............................. ATATGAGGGGGGATGATGTCTACGAACAAATC 860946 29 100.0 32 ............................. GCCGGTCACAGGGTTGTCGGAGTTCCTGAACA 860885 29 100.0 32 ............................. GGCACGTTGGCTGCCCGCCGATTATTGCCGTC 860824 29 100.0 32 ............................. GGCGCGCGGTACCGGCACAGGAGGTTGACCAC 860763 29 100.0 32 ............................. TCAGCCGGCACCAGACGCAGCGTCAGGTTACA 860702 29 100.0 32 ............................. ACGAATGAAGTCGGGAAGGGTCAGGTCCGCAT 860641 29 100.0 32 ............................. CGAGAGCAATAGTGAATGGGTGCCCGGTCATC 860580 29 100.0 32 ............................. AACTGTGAGATTACGCCGTACCTTTACCGTGC 860519 29 100.0 33 ............................. CACCAGCAGCTCCCCGGCGGCTTTTCGCCCTAC 860457 29 100.0 32 ............................. AACGCTACGCCGCCGCCGCTGAGGCGGCAGGG 860396 29 100.0 32 ............................. GACGGGCGAGAGCGCCAGAAATCTTCGCGCCA 860335 29 100.0 32 ............................. CGCGCGAATCCGGCCCAGGTCTTGTTCTGCCA 860274 29 100.0 32 ............................. TGTTCTGGACTTGCGACGAGCACAAAACTGAC 860213 29 100.0 32 ............................. CCCAGCCTAACGAGGATTGGGCATTAACGTCG 860152 29 100.0 32 ............................. TGGGTGATGCCAAAAAAGAGCGCCTGGGCTAT 860091 29 100.0 32 ............................. GTGATTTCACGCCGGAGGAATACGGGCAAATC 860030 29 100.0 32 ............................. CCTTACCAGTCCTTTGATTATGAGGAGAGAAG 859969 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.4 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGAAACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGGCTAGTTTCGTTTTTACCCTTGGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGCTGAAAAAGTGTAATAAATACAAGTATATAGTTTTAGA # Right flank : TGGTTGAGTAGAATCGCCAGGCCTAGTGGGTGCGCTTTGCTTACCCACCCTACATATATTGATTGCCAGGCCTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCCAGCCGCTTTATTTTATTCTGTCGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 889214-887663 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRMS01000001.1 Cronobacter malonaticus strain cro645W contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 889213 29 96.6 32 ...................A......... GTTATAGGTGCCACGGATAGAATTTTTATCAA 889152 29 96.6 32 ...................A......... AACAGGAAACGGTTTTCATCAGTACATTGCCG 889091 29 96.6 32 ...................A......... GTTGATGTTACTGAACGCTTTCAACTTAGTGG 889030 29 100.0 32 ............................. GGGTGTTCGTTGTCGATGGCGCTACGTCAGGC 888969 29 100.0 32 ............................. AGCTGCGGACAACGTCTCTTCTATGCGGCTGA 888908 29 100.0 32 ............................. TTAGGCGGCGCAAAAGTCTCACACCTTCACCC 888847 29 100.0 32 ............................. ATGGGGCTCGGAGATTTTGTTTTCTCTATATC 888786 29 100.0 32 ............................. TGGTGGCGAATAAACTGCGCGCGATCACGTAC 888725 29 100.0 32 ............................. GTACATATCTGTCTATCCCACCTCTCAACGCA 888664 29 100.0 32 ............................. CGCCGCATACTCGCAAAACGCTACGCTCCGAT 888603 29 100.0 32 ............................. CCTTGCCGCTCTTGCGATTAGCCCGGAGCGGA 888542 29 100.0 32 ............................. ATTCTGACGGTATCGGTGACGGTATCGAAACA 888481 29 100.0 32 ............................. ACCATTTACACCGAGTGCAAATATCAGGGCGC 888420 29 100.0 32 ............................. GGATGAAACCGAAGACGCGCAAAAGCGGCTCG 888359 29 100.0 32 ............................. GGCTTACCGCCCTACAGCCAAAAACCTCTGTT 888298 29 100.0 32 ............................. AGCGGGAGCTGGCGCGTATAGCGCTGGACTGG 888237 29 100.0 32 ............................. CCGCTAAATTCAAGAGCTACAGCTCCCGTAAC 888176 28 96.6 32 .............-............... GGTTAGGAAAACCAAAAGGCGCTGGCGCGAAA 888116 29 100.0 32 ............................. CACACCACATCACCGGCACAAGACGGCGCGCG 888055 29 100.0 32 ............................. GATGGGCGCAGCCCGGATGTTGAGCCTTTCTA 887994 29 100.0 32 ............................. ATCTGCACTTCTGGCAACGTTTTGGTAATGCC 887933 29 96.6 32 ...................T......... GCAATCGACGGGCTTAAAGAGGTGCAGGAGTC 887872 29 100.0 32 ............................. ACGGTGGACAGGGTTAGGGGCGATAAAATATT 887811 29 100.0 32 ............................. AAAATAACCGAAGGGTTTTTTAAAAGCGGTTC 887750 29 93.1 32 ..A.........T................ TCGTAGTACGCCTTAACGGTTTCGGCGCGGAT 887689 27 82.8 0 ...........-.-...C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGAATGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : CCCAGGTTCTTCGCGCCTGTCAATCACCTCTCCATTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTCCACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGAGCATCACGGACTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGACATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGGTTTACGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTACATCTGATGCAGCGGGAAATGACCGCTGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //