Array 1 3633770-3629964 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024458.1 Klebsiella pneumoniae strain QS17-0161 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3633769 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 3633710 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 3633649 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 3633588 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 3633527 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 3633466 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 3633405 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 3633344 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 3633283 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 3633222 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 3633161 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 3633100 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 3633039 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 3632978 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 3632917 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 3632856 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 3632795 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 3632734 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 3632673 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 3632612 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 3632551 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 3632490 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 3632429 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 3632368 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 3632307 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 3632246 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 3632185 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 3632124 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 3632063 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 3632002 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 3631941 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 3631880 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 3631819 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 3631758 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 3631697 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 3631636 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 3631575 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 3631514 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 3631453 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 3631392 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 3631331 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 3631270 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 3631209 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 3631148 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 3631087 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 3631026 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 3630965 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 3630904 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 3630843 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 3630782 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 3630721 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 3630660 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 3630599 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 3630538 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 3630477 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 3630416 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 3630355 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 3630294 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 3630233 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 3630172 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 3630111 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 3630050 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 3629992 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 63 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //