Array 1 124216-122846 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWQQ01000030.1 Salmonella enterica subsp. enterica serovar Anatum strain CFSAN024762 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124215 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 124154 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 124093 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 124032 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 123971 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 123910 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 123849 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 123788 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 123727 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 123666 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 123605 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 123544 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 123483 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 123422 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 123361 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 123300 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 123239 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 123178 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 123117 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 123056 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 122995 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 122934 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 122873 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //