Array 1 67860-69608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUO010000003.1 Listeria seeligeri strain FSL L7-1053 NODE_3_length_296059_cov_64.151600, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 67860 36 97.2 30 ..C................................. CAACGCTCGTATATTCTTTGTAATCCATTG 67926 36 100.0 30 .................................... TGTACGCTGAACAACTGAAGTGAAACGTAA 67992 36 100.0 30 .................................... CAGCCACAAATTGCGGAATAACTGGCAAAG 68058 36 100.0 30 .................................... CATTCGCGTTATATTATTCATTTCCAAGCA 68124 36 100.0 30 .................................... AGTTTTCCGCACAAAGCCCGACTTATTTTT 68190 36 100.0 30 .................................... TAAGTTTGTTGCAATTCGCTTCGCAACTCG 68256 36 100.0 29 .................................... TACCAACGCCCTGCCAATTATGCCACTTT 68321 36 100.0 30 .................................... GGCAACGAAGCAAGAGGTCGCCGAAGCAGT 68387 36 100.0 30 .................................... ACTATATATACCCTGACACGACCATCGAAA 68453 36 100.0 30 .................................... AGCCCAACGCTGATTAAAGTCACGGAAATC 68519 36 100.0 30 .................................... CTTGGCGTTCTTCGGAAACAACTGCGTTTG 68585 36 100.0 29 .................................... ATATTGGTACAATTAACGCGGCTAAAAAT 68650 36 100.0 30 .................................... AAACTGCTTTATACCAATTGTTGTAAATTT 68716 36 100.0 29 .................................... ACTCCGCTCTGGAAGTTGGTTGACGTGAT 68781 36 100.0 30 .................................... ATGAGATATAAGTGGAAAAATGCTTTTAAT 68847 36 100.0 31 .................................... CCTTATCCTCACGCTGCAAGCAGCCCTCCGG 68914 36 100.0 30 .................................... GAAAGAACCTTTATAACCAGTAGGGAGCTT 68980 36 100.0 30 .................................... CTTCTCAGGAATCTTTTGAACAAATCGACA 69046 36 100.0 30 .................................... TTACCGAGCTTACTCTAAACAAACAATTGA 69112 36 100.0 30 .................................... AGTCGGTATCTCGTTATGTCATGCCGTTTT 69178 36 100.0 30 .................................... ATAAATTATACGGTAAAGCTCATCCCGGTG 69244 36 100.0 30 .................................... CACCTTCATGGCTGTTTCATTATCTACAAT 69310 36 100.0 30 .................................... AAGTCTACAAGCCATCTATGAAGGACTTAG 69376 36 100.0 29 .................................... ATAATAAACGCAAAGCACAAGCACAAATT 69441 36 100.0 29 .................................... AGGTTGCGCAAAATGTAGAAGTTATACAG 69506 36 100.0 31 .................................... CCTCTGATAAATTCAAACAGCGTGCAAAGTG 69573 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 99.9 30 ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Left flank : TATTCCCATTTTTCCGTTTTCTATTTCTTCAGTTAGCTAATTTTGAAAAAATATTATATCTGACTCAATTACTACGTTCATTATAGTTATAGAGCTTCACCCTTGCAAGCGGTTACAAGTATTTCGAAAACGGTTTTCGCTGGACGAAAAAAAGGGATATGAGATGAATTAATGAAAAGATGCAGTTCTTTAGATGGAAATACCCCTAGAAATGGTTGTTGACTCTAGGGGTATCTCTTTATTAATTCGTTTTCGGAGCAGCTATTTTTTTATTGTTCAACTACTTTTTAATTTATATTCTAATTTTTCATCAGATAGATTTGTGTAGATAATTAGATTTTGACCGCGTTTTTCCAGAAAATATTGCAGGTCTTCATCACACTCCTACTTGCCAACTTTTTCAAATAGAGACCCGGTAATGGTTTCAACTCGTCATCGAAATAAAAATACATTTACATATTTTCATCAGTCACCTAACATCATTTTTGTTAAGTGTTGAA # Right flank : TGTCTTTTCCATTATACCTCAACCTAAATCAACCTATCAAGGTAAACAATAATATTTGCGGGAATTCCTTTGTAGTCAACGATAATTCGCCATTCATTATAAATGAAAATAAAATAAACTAATACAAATACAACTAAGTTATCCACAGCTTCCAACTTTAATTCGACCGTTTTCCCACCATAGTTATCCACAGCTAACATAGACCAATTTATTGCTTTTATCCAATCCGATTCTTCTACGATTAAAGGTATCTTTGCAATAATTTGTTCTTTTTTAACCATAATTTGTAATTCATTAACAATATCACTAAAATAAAAATGGTTAATTGCACCATCCATCCAAATATGCTCAGAAATGATAAATACATTGATTCCTCTTGTTAACATTTTTTCAACATGTAATTGAAATTTCTTTATTCCCGCTTCTGAAATTATAGTTTTTTCTGGTATTTCTATAAAAAATAAAACTTGCTTATTAAATAATTCTTTTGCATACAGATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 93783-93364 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUO010000003.1 Listeria seeligeri strain FSL L7-1053 NODE_3_length_296059_cov_64.151600, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 93782 29 100.0 36 ............................. TCAAAATGAATTCAGGAAAAAACATGGTTGAATATT 93717 29 100.0 36 ............................. AATCCCATATCTAGTTGTTGTAAAGCATCTAGACTG 93652 29 100.0 35 ............................. AGTGGTATATTTATCGTAAACGGCTTTGGGTTTTA 93588 29 100.0 36 ............................. TTTTTTATTGGTATTTTGCTAGTTTCGCCGCAAAAG 93523 29 100.0 36 ............................. AAATAATTCGCGCTAATGGATAGGTTTTTTGCAATC 93458 29 100.0 37 ............................. GATGCTGCAGCGTATATAATTTAATTGAGCTAATTTT 93392 29 93.1 0 ..........T.C................ | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 99.0 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGTTTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTACTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTTATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //