Array 1 67720-69246 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITZ01000001.1 Xenorhabdus miraniensis strain DSM 17902 Xmir_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================ ================== 67720 29 100.0 32 ............................. GGTTGTAACGACTAGGGGTCTTACCAATGCTT 67781 29 100.0 32 ............................. AGGGCCAGCGAAGAGCTATATTGTTCTCTATG 67842 29 100.0 32 ............................. TGAGTGACAATAATATTGTCAGGCGAGTGAGT 67903 29 100.0 32 ............................. TCACCATGCCATCGCATTTTTACCCTGACGAT 67964 29 100.0 32 ............................. CAATGATTTCATGTACTAATTAAATTGCTGCA 68025 29 100.0 32 ............................. GGAATACAGGACTAAAAATGGGGCTCGAAATC 68086 29 100.0 32 ............................. CCCGCCGGGGAATTTCTGATAGCCCGATTTAG 68147 29 100.0 32 ............................. ATTATTTTAGTATCATAATACACCATTATACA 68208 29 100.0 32 ............................. TAACCCGTATACACCATTGAGCGAAGAAGCCC 68269 29 100.0 32 ............................. CCGTTTGCTACATTCTTATTAGTCATTAAAAA 68330 29 100.0 32 ............................. AATTGCAAAAGATTATGTGGTACTAATCGTCA 68391 29 100.0 32 ............................. AACTTTGCTTTATCAATCAGCCCTTCTTTTGT 68452 29 100.0 32 ............................. TTGCTGTCACTGTGTGGGACAGTTTGCTGATT 68513 29 96.6 32 A............................ CTATGCCTTATAGTTAGTTACATATGTTATAT 68574 29 100.0 32 ............................. CTATGCCTTATAGTTAGTTACATATGTTATAT 68635 29 100.0 32 ............................. CCAGTACCACCAGCACCAGTAAATACAAGGCG 68696 29 100.0 33 ............................. TTTTTTTTCATTTCTGCAATGCCCTAAATCTGA 68758 29 100.0 32 ............................. CATTCAATTTTTCACCACCCTGTTGAGTTGCA 68819 29 100.0 32 ............................. AAACCCGCGTTTTATATTGTCTGCATTAGTCT 68880 29 100.0 32 ............................. GAAATACGTTTAGTGAGTGCTTCTCTGTTTTT 68941 29 96.6 32 .............G............... CTGATACTTGTATCGATCTTCTGGGATGAACT 69002 29 96.6 188 .............G............... TAATGGTGATGATTTGTCTATTTACTTAATGAGTGAGACTGGGCGATGGTTAACATTACTCATTCTTGTTATTTCATGTTAAAAATCAAAAGTTATTAAATATCGTTTTATCGTGGACGGTTTTTATTTCTATTGGCTTTTTTACGCAATGAAAAAATTTGGTTGTTGAGAAAATTTAATTCGAGCAC 69219 28 75.9 0 T....T......CT.......-G....G. | ========== ====== ====== ====== ============================= ============================================================================================================================================================================================ ================== 23 29 98.5 39 GTGTTCCCCGTAGATACGGGGATAAACCG # Left flank : GCCAGCGCAGTAAAACGGGCAAGCTCATACCGAATTTGCGGCCCAAGTAAAATCACATCGGCTTCATGAATGCACGCTTCCAGCTCCAGCGCCGGCACGGCCTTGATAGCCACATCCAACTGCCGTTTTTCGGCTTCCGACTGCATACGCTGCACCAACATGCTGGTAGACATCCCCGCTGCACAACACAATAGAATGGTTTTCATGATTTTGTTCTCTTTATTGTTATCTCGTTATTATTTCGCTCAAATCTATTTCACTTTAACTTAAATGAGAGCGCTCTCATTTAAGTTAAGGCTAACAGGTTATTTTGTGATTGCTGCGATGGGAGTCTCATAATTTGATAAGCAACAATTAAGAATATGGATAAAATGCGAGCTGCATTACAAATGGTAAATAAGGAAAAATGAAAGGGAAAATTGGACTGATTTATAGGCGAAAAAAGTGGTAGAATTTTTCCACCCTAAAAAATGCTTATAAAACATATGGGTATAATTAGG # Right flank : GGTTTGCGCCCAAATACAGTATTTGCTCTTGTTATGTAGATGCTTCCCCCATAATCACGGAAATAAATTGGTCACAAAAGACTTGTTAACAGGTTTCTTGTGACTTAAAATTAAGACCTATTAACAGGTCTTTTAGTGAGGAATTATGGCTAATATCATTTTGAGTGACATCACTGCCAGCATCAGTGAATTAAAGAAAAACCCTATGGCAACTGTCAGCGCAGGGGAAGGTTATCCGGTCGCTATACTGAATAGAAATCAACCCGCATTTTATTGTGTTCCTGCGGAGCTGTACGAAAAAATGTTAGAAGCTCTTGATGATCAGGAATTAGCTAAGATAGTGAAAGAGCGGGAGAATCAGTCCTTAGTTGATGTAGATTTGGATCAATATTTATGAATTATAAGGTTAAATTTAGGGAAGATGCTCAAAAAGAATGGAATCGACTGGATAGCACTATTCAAAGACAATTCGCTAAAAAATTGAAAAAATGTTGTGAAAA # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.66, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAGATACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAGGTACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80242-80514 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITZ01000001.1 Xenorhabdus miraniensis strain DSM 17902 Xmir_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80242 29 100.0 32 ............................. GCGCAACAGTGGCAATTGGTCGCCAATCGCTT 80303 29 100.0 32 ............................. GACAAATAGCAGTATAGCTGTAACGCTCTTTA 80364 29 100.0 32 ............................. ATGTCAGTATGTTAGCTTTTAATTCCGTATTA 80425 29 96.6 32 ...............G............. TTATTCAACAATACGCTGAAATTCGGTCGCAA 80486 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCGTAAGTACGGGGATAAACCG # Left flank : ATTAATTGAAGAAGTCCTTGCCGCGGGCGAAATATCTCCACCATCCCCTCCTGCTGATGCACAACCTCCCGCTATTCCCGAACCGATATCCATTGGTGACATTGGGCACAGGAGCCAATAACTATGAGTATGACGGTTGTTGTAACGGAAGCCGTTCCTCCACGATTACGGGGACGTTTAGCCATTTGGTTACTGGAGATACGAGCCGGGGTTTATGTCGGAGATATTTCTCATAAGATTAGGGAGATGATTTGGGAACAAGTTACTGAACTCACCGAAGATGGCAATGCCGTTATGGCTTGGCAAACGAATACTGAATCTGGATTTGATTTTCAGACTATGGGGGAAAACAGAAGGGAACCGATAGATTTTGATGGCCTGCGTTTAGTGAAATTTAAACCGATTGCTGAGGATTAATTTAGAGGGGTTAAAAGGCCATACAAAATGGTAGAATTTCCGTCTCTGATAAAGTTGTTCAAAAATATATTGTTATATTTAGG # Right flank : GCGATTTATCATTTAATCAACAATTGCCGTTTATCTTCACGCTGGGCATTTTCCGCCAGCATTTTAAACTCTTTCACTGTCCAATATTGTTTTGGGGCAGGCAGGTTTTTCATCTCATTGGTTGGCCATAATTGAAATTCAGCCAGTTTATCCAACGAAAGATGCTGATAATACTCAGGTAAAGAGAGACGTAACGCAAAGTTTTCTTTACCCGAAGGCATGAGTGGATAGCGATTATCGTGGGTATCATAATTGCGGTGCAGCACTAAAAACTTCTCAGGAACGCGTTGATAGCTGTTCCACCATAAGCCATCTACGCTATCAAACATCTCTTTTGTGCCTGACTTGGGATAAGCGCCCAGTTCATGCAGGGTCGTCGGCAAGATACTTGCCATTGAGGTTGAAAACTGAGCCACAGAGGAAGCATGGCCTTCCAGAATCAGCGTTAGTGCCAATCGTGCGCCTAACAGATTCGAATAGAGATCTTCCGGAGAAAAAGC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 84427-85919 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITZ01000001.1 Xenorhabdus miraniensis strain DSM 17902 Xmir_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 84427 29 100.0 32 ............................. AGCTTTTACCCGGTCTGGGAAGTCCGGCACGT 84488 29 100.0 32 ............................. TCGAATTCTGACCGGAGAGTGTACCGATCCTC 84549 29 100.0 32 ............................. TGTGATTTAATTGCTATGTGGCGTAGCCATCA 84610 29 100.0 32 ............................. GGATTTGATGATGGTGATCAGCTGATAAAAAA 84671 29 100.0 32 ............................. AAAATTGCTTGCATGGCTACCTTGCTTGCCTC 84732 29 100.0 32 ............................. ACCGAACTGATCGGCATTCCAGTCTATAAAAC 84793 29 100.0 32 ............................. GTCATTCCTGCCCTGTTGAGTCAATTGGGTCA 84854 29 100.0 32 ............................. CCAACAATTCTGCTCAGCAACCTACCCAAAGA 84915 29 100.0 32 ............................. TAGAGATGCATGTTTGGCAGTCAGTAACAGGA 84976 29 100.0 32 ............................. GCGCATTGGCGGGATAAGGTCGATCATGGTAT 85037 29 100.0 32 ............................. TAGAGATGCATGTTTGGCAGTCAGTAACAGGA 85098 29 100.0 32 ............................. TACGCCTCGCAGGATATTGTCAGCATGACGGA 85159 29 100.0 32 ............................. TGGAACGCGAGAACGATTTTGAGAGTGACACT 85220 29 100.0 32 ............................. GGGTGTTAGGGAAGGCACAGCCAGAAGAAGGA 85281 29 100.0 32 ............................. ATTTACGGCAGGGTGGTGCGATCAATAAGGCG 85342 29 100.0 32 ............................. CGCGTAGATATGAGCTAAACATGACTCAGACA 85403 29 100.0 32 ............................. CAGGTCTTGATGCCTCTTGAAGAGGAAATTCG 85464 29 96.6 32 ...................A......... CAAATTCTGATCAAAGAAACAATTAGTCCACA 85525 29 100.0 32 ............................. CTAACAACCTGTACATGCACAGTTTTTAGGCT 85586 29 100.0 32 ............................. CCATTGTATTAATTCATCCGTGTTGCTGAAAA 85647 29 100.0 32 ............................. GGATTACCGGAGACATGCTGTCACCATGGACA 85708 29 100.0 32 ............................. TTTGAATATTCTGGCCAAAATTATTCATGGGT 85769 29 100.0 32 ............................. ACTGGTGCGGATTCGGTATCACAGAAGTACCT 85830 29 100.0 32 ............................. ACTGGTGCGGATTCGGTATCACAGAAGTACCT 85891 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.9 32 GTGTTCCCCGTAAGTACGGGGATAAACCG # Left flank : CAGAATATTCGTTCGTTTTACCACCAAATTAAATGCGTTTTCTCTTCCTCATATCTTAATAAAACTAATCATTTAATATAATGATAATTCCAAATGTTAATTTTTTATTTTCGGTATATTTCAGTTGATTAAAATAATATAAACTATAGAAAATTTTTTACTTCTATTTACCTACTGACTAAACCAAAATAAATCACTATAACGACATTATTGATAAAACTTCTCTGGTATGTGGTTATTTTGTTTAATGAGTAGTTATTTTTATGTGTTCTTATGTGTAAGAGGTTAACGTTATCCCTGTAATTATGGGGAACACTTATTAGATGAGATCACAAAGACTCAATGAATGAGTGTTAAAAAAATCAGGATAAAATTTGTTCAAATTTATAGAAGATTGGCAGGAAAAATAGAAGGATAAATTTGTCTATTTTATAAGCTAGAAAAATGGTAGAATTTTCTATCTCTAAAAAGTATTTATAAAACAGATGGCTATATTTAGA # Right flank : GAACGCGCTAATATAGATTGGAGTCATACTCCTAATTCCCGTAGAGGCGAGGGATACAAACAAATCTATTGAATTATGCACATGTTAAGATTTATGCCATTAACTATTAGCTTATTAAAATAATTCAATCTTGATAATATTTTTAATATACATACTCTATTTTAGATATTTATTGAAAACATCTGGAATATTGGCACGCTGTTCATTTAAAAAACAATTAAAATCGCAAAAAATATCATTATTGCTTAATGAAAAGTATGGCTATTAAAAGTATTTCCTTCCAAAGGAGACAAAAATATAAATATGCCTCCTTCAGAAATCAGGTTACTTACCCAATTCTCCCAATGCCCTACGTATTGGCGTATGCCGCTTAATCAGCTCTTGTAATACCTCTTTCAATAACTGACTCTTGCCTTTGCCCAATGGCTCCAGCACACTTTTTTCATGGGATTCTGCTTCAGACAATAGGCCTTCTACCACTTGCAGACCGGCCTCTGTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //