Array 1 46-1480 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWJB01000107.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001384 CFSAN001384_contig0106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 46 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 107 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT C [116] 169 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 230 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 291 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 352 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 413 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 474 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 535 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 596 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 657 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 718 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 779 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 840 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 901 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 962 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 1023 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 1084 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 1145 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 1206 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 1267 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 1328 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 1390 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 1451 29 96.6 0 ............T................ | A [1478] ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGGGATAAACCGATGGAGCGCGGTGGTTACATCGGCGTTCCGGAG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 962-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWJB01000127.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001384 CFSAN001384_contig0126, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 961 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 900 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 839 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 778 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 717 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 656 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 595 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 534 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 473 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 412 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 351 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 290 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 229 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 168 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 107 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 46 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GCCGAACGCTCAACGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34260-35568 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWJB01000025.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001384 CFSAN001384_contig0024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34260 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 34321 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 34382 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 34443 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 34504 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 34565 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 34626 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 34687 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 34748 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 34809 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 34870 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 34931 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 34992 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 35053 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 35114 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 35175 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 35236 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 35297 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 35358 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 35419 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 35480 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 35541 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //