Array 1 40603-40154 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIY01000022.1 Megasphaera sp. An286 An286_contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 40602 28 100.0 32 ............................ TGAAGAACGTCAGGACGGGGAAAGTGTACAAA 40542 28 100.0 32 ............................ AAGATAGCCGGGTCGATGTCGCGCAGCATTTC 40482 28 100.0 32 ............................ AGCCGACTAGAGAAAAGTATGATACATTGGTT 40422 28 100.0 32 ............................ TGCAACAGTACCTTCTTGTACTCCATATCCTC 40362 28 100.0 32 ............................ TGCACGGGGTTTCGCAGCGGCATTTTTTCCGG 40302 28 96.4 32 ............G............... AAACTATGGCGGGCTAATTATACAGTGGGGAA 40242 28 89.3 32 ...G........G...........A... TCTGGAAATACCACGTATCGGACGTTTAAGTT 40182 28 85.7 0 .G.G.......C...............T | C [40158] ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.4 32 GTTATCTGCCGAATAGGCAGTTTAGAAA # Left flank : TAGTGATTGCTCCTTTGTTGATGATTTCTCGCAAAACCATTTTAACATGAAGCTTCACTATGGATTTTTGTTTTTTGATTACCTGTTCAAATTCATTTTACAATTAACCCAAATAAAATAGGCAAAGGAAAACCCATTGGAAATATGCGGTTTTTGCCAAACGGAAAAATTTGGGGTAAAATAGGGTAAAACCACTGATACGCTAGTAAGTATGCTGTATGGCAGTATGTTTTCTTAC # Right flank : ATTGCGGCCAAGGAAATGCTGATGTAAAGTTGTCGTCTGCCGTCTGTCGTACTGGTGAGCTGGGCTGTTGTGCTTTTGTGTGCTCCTATATACTTTTGAATCCTATGGTAATTACAGGTCTGGCTCATAATTTTCCGCCAAAAATCTTTACACTTCTTCTGCCATATAGTATAATAGTCATTGTCGTACGGGCGCTCAGTGAATCGAAGACTCCGACGTTCACTTAGCGGTTTGCGAATAGATTATAGTCACAAATGGAGGAAGACAGATGTTAACAGTTGATCAGAAAAAAGAAATCATTGCTAAATTTGGCGCTAACGAAAACGATACGGGTTCGCCGGAAGTACAGATCGCGCTGCTCACGAGCCGCATCGTGTATTTGACGGAACATCTCCGCAGCCACAAAAAGGACCATGCGTCCCGCCGCGGCTTGCTGAAATTGGTCGGCCAGCGCCGCAACTTGCTGGCATACTTGCAGAAACACGACCTCGAACGGTATC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCTGCCGAATAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTACCTGCCGCATAGGCAGCTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 557-1584 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIY01000024.1 Megasphaera sp. An286 An286_contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 557 32 100.0 34 ................................ CCCTTACTAGCAATAATACCTTTTAGCGCATTTG 623 32 100.0 34 ................................ CTTCTATATAATCTCCTTCAAACAATTCTTGTCC 689 32 100.0 35 ................................ CTGGAAAGCGAAAACAGCACAACGGATATGATGAA 756 32 100.0 35 ................................ GAACATAAACGAGGACGGCAGAAGCGGACGAACGA 823 32 100.0 34 ................................ AGGAAGTCAAGGTTCGATGCCAGGGCTTCATGAA 889 32 100.0 34 ................................ TAGCTGGCATCCAGTCTAACGAGTATGAGGTCCC 955 32 100.0 34 ................................ TTGCCAATGCCGCCAAAGGAGGCGGTAGGGGACA 1021 32 100.0 36 ................................ GCATTACATGTGACGCTAACAAGTGGTACGCATGGG 1089 32 100.0 34 ................................ GTCGCAAAGGAATTTATTTCCTTGCTAGTATATC 1155 32 100.0 34 ................................ ATCTGTACAGTAAACAGACCGACGCTTTTTCATT 1221 32 100.0 35 ................................ CCGACAGAGCAAATGCCAAAAGGCCAAAGCTTTTC 1288 32 100.0 34 ................................ CCGAAGGCCGACAAGGCAGCCCTAGGCATGCACC 1354 32 100.0 35 ................................ AAACCGGCAGGCCCCAGCGGCTGAAACAATGTGAT 1421 32 93.8 34 ..T......T...................... CAGTTTGCCGTGACCGAGACGGCGAGCGCCGGCA 1487 32 96.9 34 ..........G..................... GGGACGCAAGAATACATCGAACCATCAGGCATTA 1553 32 90.6 0 ..........G......A...C.......... | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 98.8 34 GTCACTTCTCATGCGAGGGTGTGGATTGAAAT # Left flank : AGGCGTACGTCCGTAAGCTCAAGCAAGAGCGGATTTTTCAAAGCATGTCCCGGCAAGGCAACTGTCTGGATAATGCCGTGATGGAGAACTTCTTCGGCCTACTGAAACAGGAAATGTACTATGGTGTCGTGTACTATAGTTACGAAGAATTGAAATCAGCTATCGAACAGTATATCAAATACTATAACGAGCAACGAATCAAAGAAAAACTTGGCTGGAAGAGTCCTGTCCAATACAGGTTGTCCCTGTCCGCTGCATAAAAAAGTAACGAGATAGCAAAAACTACCTCGTTACTAAAGTCTAACTTTTTGGGGTCACATCAGAAAGCATCATCATGCAGCTTGTGCGAACCAGAAGTATGCGGCATTTTCCTTTGGTTCCGCACTAATATACATAGAAAGATGCTGTTTGGTGATGCGAAAAAGCGGTATAAATTACTAAGTATAGTTATTAATGCCTATATTTGCTGAGGTTGTTTTTGTAGTATACTAAATGTAGCA # Right flank : TGTTTAAACACTGACAATACTAGGCTTATTCAATATGAATTCTGCAAGCATTTTGACCAGTCAAGAAGCCTCGCAACATGCTTCGTAATTGAGAGGCTCCTTGACGGATAACAGTACTAATAAATGAAAATAGCAAATATTATCCTAAAGAATATCTTTACAAAGGATGAGATGCCCTATGAAACAGAACCTAACGTCTTCCGATTTAAAAACGATTCTTCATTCCAAGCGAGCCAATGTCTTCTATCTGGAGAAATGCCGTGTCATGCAGAAGAACGGCCGCATTGTGTATTTGACAGAGACGGAAAAGGAAAATTTGTACTGGAACATCCCGATTGCTAATACGACGGTAATTTTATTGGGAACAGGTACGTCTATTACGCAGGCGGCTATGCGGTTATTGGCCGGTGCCGGCGTCCTGGTGGGGTTCTGCGGAGGAGGCGGTACGCCTTTGTTTGCCGGTTCAGAAATAGAGTGGCTGAATCCGCAGAGCGAATACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCTCATGCGAGGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 10432-11001 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIY01000024.1 Megasphaera sp. An286 An286_contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10432 28 96.4 33 ...G........................ ATGGCTTGTCTAAAAAATTCACTCATGTTTACC 10493 28 96.4 32 ...G........................ GTCCTGCCATTTCCAAGTGATTTTCTGGTCGC 10553 28 100.0 32 ............................ GCAGGCCAGCCCTTCCAGTGTGGCCGCTGCGC 10613 28 100.0 32 ............................ AGCTGCCCTTGATACAAGGGGCGTATGGCATT 10673 28 100.0 32 ............................ AGCTGGAAAAGGCGTAGGTTTCCGTTTCTTCC 10733 28 100.0 32 ............................ AAAAACGTTATCTGGTATACGTACCCGGCATT 10793 28 100.0 32 ............................ ATAAACCTAGTAAGAACCTACATTGTAGGTTC 10853 28 100.0 32 ............................ TATTTGTTCCGCCGCCAATAATGACGGCCGCT 10913 28 96.4 33 ...........T................ TGCCCCCCGCTCGTCGCGTTGGATGTAGACGAA 10974 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.9 32 GTTATCTGCCGCATAGGCAGTTTAGAAA # Left flank : TGGAAATGTTGAATATAAAGGGCGTGTTGCGGCGTTTTGCTGATTATGCTGATATTGGAAAGATAAAGAAAATACCATATAAAAAGATAAAAGGCTATGCTGTGTACAGCCGATATCAGCCAGACAGCTCCGTCCATCAAAAAGCAAGACGGTACAGCCAGCGCCATCCTGATACTTCCTATGCGCAGGCTCTCCAGATTATGAAATCAAAGAATCGGGCGACGCAGCTGCCGTATATTCAGATGTGCAGCATGACGAACCGCAATCCATTCCGATTATTCATTAAACGGACGAAAGCTGAACCAGGAGAGAAATATCATTTTGGCAGTTATGGATTAAGTCCTCATTCTGCAGTACCCGAATTTTAACCCAAATAAAATGAGCAAAGGAAAAACCTTGGAAATATGCGGATTTTTGCTATCTGGAAAAATTTAGGGTAAAATAAGGAAAACATACTGCCGTGCCAGTACGTATGCCGTATGGCAGTATGTTTTCTTACA # Right flank : AATTGAAGTTGTGTAAAAAGTGGGCGAAACGAATCATTCGGCTGCGTACATTGGAAGAAAATGGCGGTAGTATCGGATTATGTGCATGATGCCGATCAAAACTGCCGAAGGACGGGAAGCAAAAGGATACTGCGACGTCCTCATCAAATAAATATCATCCACCACTTGATACTGTCGGGAATGTATAGGGGAATGACTCTTTTCATTTTCTATGACAAAATGAAGCCGTTCGTACAACCATCCGCATATTGACAGGCTCTAGGGGGCATGCTATAGTTAATTAAAATCTATTTATATGCAGGTCAGGTGTCGCAGACTTAATAGAGAAGTCCGGTGAAACTCCGGCGCGGTCCCGCCGCTGTAACGAGGAGCGACGCTGCAATATGTCACTGTACCCCACAGGTATGGGAAGGCGCAGCGGAGCGATGAATCTGAGCCAGAAGAACTGCCTGACTGATAATCACCGATAGACCTGCGAGCGATGGGAATGGAGATTCAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATCTGCCGCATAGGCAGTTTAGAAA # Alternate repeat : GTTGTCTGCCGCATAGGCAGTTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTTTCTGCCGCATAGGCAGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2341-514 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIY01000005.1 Megasphaera sp. An286 An286_contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2340 32 100.0 33 ................................ TTCCCGCAGGAGAACGATGACAAGTCTACGAAC 2275 32 100.0 34 ................................ GGCGTATGGGGAATGGCGCTTTCCCCGGATTTTT 2209 32 100.0 35 ................................ GTTATAAGGAAGGCCGTACCCTGCCACTGCTTCCA 2142 32 100.0 35 ................................ ATACGCACGGCGTACGGCGCAAGGCCATGCGCGAT 2075 32 100.0 35 ................................ TCGTCTATCAGCTGGACCGCTTTTCCCGGAATCGT 2008 32 100.0 34 ................................ TTGACCGGGATATTCAATAGCTCGTCTTTGCTCA 1942 32 100.0 35 ................................ TAACTTAAAAAATGAGCCGACCTTTAATTGCTCGT 1875 32 100.0 34 ................................ GGCTGTTGCCGCCGGGCGGCCATTGCCGTATCGT 1809 32 100.0 35 ................................ GCGATACTAGGACGGCCGTACACGAAGAAAAATAG 1742 32 100.0 35 ................................ TCGTTGAAATCCAGATACGCAGACAGTGCGCCACC 1675 32 100.0 34 ................................ CTATAGGTATCGTAGGCTAATCCCTTGTATTCAC 1609 32 100.0 35 ................................ GTCAGGAAAGAGCATGGGAATCGTGAGCTTTGCGT 1542 32 100.0 35 ................................ CACGTCGATTTTTACGACAACGATATGACGCTGCA 1475 32 100.0 34 ................................ CCAGTTTCCGGAAAAGACGCCTGTGATAAAGGTA 1409 32 100.0 34 ................................ AGTCTTTCGCCCAGAACAACGCCAGCGGCATCGG 1343 32 100.0 35 ................................ AGAAAATATATGGCCAACGTAGTAAGGCAGATTAG 1276 32 100.0 34 ................................ CATATATATCACCTACCCCATATGAATAATCTCT 1210 32 100.0 35 ................................ GCAAACCTGTCAAGATTTTGCGCCGGGCCGTGGGT 1143 32 100.0 36 ................................ TTCACAAATAGTTGCTAAGTAATTCCCGCTGCTTAA 1075 32 100.0 35 ................................ CTGCAACAGCTCGCCCAGCTTATCACGACAGATAA 1008 32 100.0 34 ................................ CTTGGTAGACACGCAGAATAAAGCTTGATACCGT 942 32 100.0 35 ................................ CTTGTGAACTGCCGAGTCCAGGACATTGACCAATA 875 32 100.0 34 ................................ TGAGCATGTTATGATATGGCTTCATGTTCTTTCC 809 32 96.9 35 .............C.................. ATCGTCCGTATGTAGTCGTTTCCGCCGTTGATAAA 742 32 90.6 33 .........TA..C.................. GCCGTCATCCGTCTCGATTTGATAACCGTAGCA 677 32 90.6 34 ........TT...C.................. ATGCCATAGCCTGCCGTAAAGGCAAATGCAGAGA 611 32 84.4 34 AC......TT...T.................. TGGTACTCCTCGACAAAGCCTACCGTATCGAGCT 545 32 93.8 0 .............TA................. | ========== ====== ====== ====== ================================ ==================================== ================== 28 32 98.4 35 GTCATCCTCCGTGAGAGGATGTGGATTGAAAT # Left flank : GCTTCTGTGGACGAGTATTATCAATATGTTTGAACACGATCATTCGGCAGCTCGCGGTAAGATGACTGTACGGGAGCTCATCGTATTTAAACACGACAGCGAATTGGGAAATGCGCCGGCCCATAAGCTGTTTGAAGCCGTTTCGGTTCAAAAAAAATCTGACGAAGCCGTTCCGCGTTCATATGATGACTATGAAGTGCGCATACATGAAGATAAAGTGCCGGCAGGCGTAACCTGTATGCGAATGATATAAGAAGCCAGCAGATTCACTGATAGTAAAAAGCGCAATCTTGCAGTGGCAAAGGAATACGCCCTAGAGAGTAAGACTGCAGCAGGTAAAAGTGCGAATGCAAAGCAGGGGCTGTTTCGCCAGTGCATTCGCACTCAAAACCTTTAATGGTGTTAAGCTTTGCGGCCATTTGTTATGGTCAGAAGCAAGCATGCTGCATAAAGATATCTATATTTGCTGTATGGAAAACTGTAGTATACTAAATGTAGCG # Right flank : GACCACAACGTTACGGGCTCGACGCACTTTGCTGGGTCATCCTCCGTGTGAGGGCGCTTTGCTGATTATTTTCACATCAAGAGCATACAAAAAGACATCCGTTTGAGTAGATTCAATAATTATGTTGTATACAGCAGATATTAGTTAGATTTTTCTGGACATCAAAAAAAGCAAGACGGTACAGCCAGTGTTATCCAGATATTTCACAGAGCAGGCGCTGCAGCTTATGAAATCAAAGGATTGGGTAGCGCGATTACTGTGTATTCAGATGTACAGTATTACGAGCCGTACTCCATTTAGATTGTTCAGGACGAAAATTGAATTAGGAGAAAAACATAATGTTGAAACCTATAGATTAATTAAGGCCTAATTCCGTAATACCAGAATTTTAACCCAAATAAAATAGGGGTAAATTGCAAGTTGAATTTGAACAACCATAATCAGGAAACACACTCACTAGCATAAACTTCATCGAGGAATGCATCAAATAGCTCTGACGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCCTCCGTGAGAGGATGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 3343-5635 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIY01000026.1 Megasphaera sp. An286 An286_contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 3343 32 100.0 34 ................................ TGTTCGCTCCCCATGACGGGCGCACTGGGCTGCA 3409 32 100.0 35 ................................ TCTCATCATGCTTGTATTAATATTGTATGGTGTGT 3476 32 100.0 35 ................................ TTCCATGTTTCCCCAGACATGAGCTGGCACACGGT 3543 32 100.0 34 ................................ ATCCCTGTTGATGATATGGACATAGAATCTGTCT 3609 32 100.0 35 ................................ CTCTGCCGTGACTCTCTCCGCATTGCGCTGTACGA 3676 32 100.0 34 ................................ GTCTACAAACATTTCAAACGCTCGTTTATATAAA 3742 32 100.0 34 ................................ AATTCGTCGCTTTGGCAAGTGATATAGATAATCC 3808 32 100.0 35 ................................ CAAATTAGATTGTCAAAAACATCCTCAGGATGCGC 3875 32 100.0 34 ................................ CAAATATCCGGCATAGTGTATCAGCTCTTTGTAT 3941 32 100.0 34 ................................ CTTTTTGCATCAAGAAAAGCTGAGGAAGCTGAAA 4007 32 100.0 34 ................................ CGAGCAAAATAGGGAAGTACCTCGGACAGAAGAT 4073 32 100.0 34 ................................ TTCTTCGCTGTCTGTATCTTGCTTAATAACGACG 4139 32 100.0 34 ................................ TTTGGCCGCGAGATAGTCGTCAATGGCCGCGATG 4205 32 100.0 34 ................................ CTGCGATCGTAGCTTGATAAGCAGCCGCGCCCGG 4271 32 100.0 33 ................................ TATTACAGATAAGCCTTCGTTTGCTATGAAGAA 4336 32 100.0 34 ................................ TTATTCATGTGCTGTCACCTCTCTTTTACAATAC 4402 32 100.0 35 ................................ GTCCATACACTGCAGGCCGCCAGCCAGGCAGTACA 4469 32 100.0 35 ................................ CGCATCCGCAGCAGCCCCCACCACCATAATGTATA 4536 32 100.0 35 ................................ GTGAATTTGCTGCCGCTCCATTGCACATCGGAACC 4603 32 100.0 34 ................................ CCTGCTTGTCATACTTCAAGCCATCGTCGGTGCC 4669 32 100.0 35 ................................ ATCATCCAGCGATGTATGTTTCCGAACAGACTTGC 4736 32 100.0 35 ................................ TACACGGAGCAGGTGAGTTTTTCGGGTCAACACGT 4803 32 100.0 35 ................................ CTCGCCGAGCTGGTCAAGCGTGTGGGAAAGGATGT 4870 32 100.0 36 ................................ CATAATGTTGTCATCATCTTCTTCATTATTCCTCAC 4938 32 100.0 35 ................................ CCAGATTTAACACCTGTTGTCCTTGTTGGCGGCCG 5005 32 100.0 35 ................................ CTGCTGCGTGGTTACGAGAAAAAAAGAAAGATACG 5072 32 100.0 35 ................................ AACTCGCTCGGCTGCACTCCGCATCTTCTGCGTCC 5139 32 100.0 34 ................................ TGCATCAGCAAAATAGGTTCGATGATGCAGCCAT 5205 32 100.0 34 ................................ TACCTCCCGGCCGAGCCGTGACTCTACCCAGTTC 5271 32 100.0 35 ................................ AACGAGACGCTAGAGACAACGAAGGTATTTGCGTT 5338 32 100.0 34 ................................ GGCGATTTGGGCAATACCCTGATGCCCGTCAGCG 5404 32 100.0 34 ................................ TGCAACTTTTGAAAATACCCCGCTTATTGTCCCC 5470 32 100.0 35 ................................ TTTTTCGGACCCACAGTTATGGAAGTAGCTTGGGA 5537 32 90.6 35 .........T.C.T.................. CACTCGTATAGCGTGCCGCGGCTTATGCCAATTCT 5604 32 84.4 0 .........T.C.T....A............A | ========== ====== ====== ====== ================================ ==================================== ================== 35 32 99.3 35 GTCACCCTCAGTGCGAGGGTGTGGATTGAAAT # Left flank : AACAGGAATTGAGGTGGCAGACGAAATGTATATTCTAGTTTCGTACGATATCAGTACGAATTCAGCGGCAGGAAAACGCCGCCTGCGGACGGCTGCTAAGATATGTTTAAACTATGGGCAGCGCGTTCAAAACTCTGTATTTGAATGCGAAGTAGACGAAGGACAATATTTGCAGCTGAAACACCAATTACATGAGGTGATTGACGAATCTGTCGATAATTTGCGTTTCTATCGCCTCGGGAAACACTATAAAAAGACCGTAGAATCCATTGGCGTCGACAAAGGATATGACTTAGAAGGCCCGTTGATTCTGTAGCGGCTTTCCGGCAATGGAAATAGGCTGTGCGAATCATAAGCATCGGATATATACCAGGGAGATTCGCACTCAAAAGAGCAATAGTTTGTCGAAATAGACAGCGATTTTCAGCAAATCAGCTGAATAGAGTTGTATAGGATTCTATATATGCTACGTTTCGGAGTAAGAGATACCAAATGTAGCT # Right flank : ACTTCATATTATATTTTTTTGATAAAATTACGGTAATAAAAAAATCGTAATTTCTGTTATCTGCTATCTTTTATGGGGCTAACATTTTCCAGTATAACTGTCAAAATTGATATAAATTAATTGAATATCAGATATATCTGTGTTATTATGATTTTATTGCTGGAGGGGAGGGAAAAGACATGATTAAGCGGGAAGCGTACATGAGCCGTATTCGGCCGTTTATCGGAAACGATTTGGTCAAAGTACTAACGGGTATTCGGCGCTGTGGAAAGTCTGTTATGCTGGAACTGATTCAGGAGGAGATAATGGCGTCTGGTGTAGATCCTTCTCAGTTTATATCTATTAACTTTGAAAATATGAGCAATGCCAGTCTTTGTACTGCTCAGGCCCTTCATGATGAAATCATCTGCAGGGCGGCGCAGATTTCAGGAAAGGTGTATCTCTTTTTTGATGAAATCCAAGAGGTACAGGATTGGGAAACATGTATCAATTCCTTCCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCTCAGTGCGAGGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 2 7324-8821 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIY01000026.1 Megasphaera sp. An286 An286_contig_26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 7324 32 100.0 35 ................................ GCCGGGGCCGAATCAGCGCGACGAGAGCATAGAAG 7391 32 100.0 33 ................................ GACAGCGTATTTTCAGATTTTGTCTCGATGGTG 7456 32 100.0 35 ................................ GGACAATCCAATGTTTACAGATGATTGCCCCTGCC 7523 32 100.0 34 ................................ CTGTCGTGCAGGATGCAGCACAGCAGCTTGTCGC 7589 32 100.0 34 ................................ GTCTAAGGCGCGACGGTTCAGGTCGTCAAACAAA 7655 32 100.0 34 ................................ AACATGGCTTCAAATTCCTGCATTTTTTGCTCCA 7721 32 100.0 34 ................................ GTAACAGCCGGGAGATGAAGAAAGCGGCACTGGC 7787 32 100.0 35 ................................ CCTAAGCTGTGCAACATAGCGTCGGTGCGGAAGAC 7854 32 100.0 35 ................................ CTATATCCATACCGGCGAAAAAGGCGGGCCGCTTC 7921 32 100.0 35 ................................ CTATTCTCGGCTCAGTTGTTGCCGGAATCCCAGTA 7988 32 100.0 35 ................................ ATTACGACCTTGAAATATAACCGCAAATTAAAGCG 8055 32 100.0 35 ................................ CCAGTAAAAGGATGGGACACATATAATATTTTCAT 8122 32 100.0 35 ................................ AGCCCATGCAGCAATGGCTGATTACGCATTTTTGC 8189 32 100.0 34 ................................ GGGATGAGGCCTGTTGTGTTCTTTGCTGGTTCAT 8255 32 100.0 34 ................................ CTCACCCCCTGCTTGCCTTGATAATCTTTGTCGG 8321 32 100.0 34 ................................ AATCAGGACTACGCAGGTATTGTTCCCCGGAACC 8387 32 100.0 34 ................................ GCCCTCGTCTGTAGCCGCGACGACAATATCGCCA 8453 32 100.0 35 ................................ CAACGTGATCGTGACCGTCTTAATACTTGGAGTAA 8520 32 100.0 36 ................................ ACGGCCTGGCGCTGCCAGTCGTCCAATCTCGCATAC 8588 32 100.0 36 ................................ GCTCTTGTAATTGAAGTCTTTTGCAACACATATCAG 8656 32 100.0 35 ................................ TGCGCCATATGCATGCTCTCAAACGAGGCGCCGGC 8723 32 87.5 35 ....C....T.C......G............. TTCATGAGGTCGTCGATGCAAAAATCGCTGCACCG 8790 32 87.5 0 ....C.....AC......G............. | ========== ====== ====== ====== ================================ ==================================== ================== 23 32 98.9 35 GTCATCCTCCGTGTGAGGATGTGGATTGAAAT # Left flank : TGAATCGCAAGGTAATCGGCTGTATATCCAGGTCGCCTACTTGTTGGCGTCAGAGGAAACGATTCAACGAGAATTTGGCGTTTATGAGCGAGTTCGGGACAATTACCCTAAGTACGTTCTTACGCTGGATGAGTTTGACATGAGCCGGGACGGCATCAAGCATCGAAATATTCGCGATTTCCTGCTGGAAAAAGAGTGGAGATAGACGTTGTCCGAGCTATCTGTTTACTGGATTAGATTTTCCCTTTTATGTTCCCTTAGGGATATGGTATCGGAAACAATCCTCGGAAAATCGCATAATTCAGTTAGTGAATACGATTATATACTTTAATACATGGGTAAGTGCGAATTGCAAGTATCGGATATATCGTGGAGAGATTCGCACTCAAACAAGTAATATGTTGTCAAAATAGACAGCGATTTTCAGCAAATCATCTGGATAAAGTTGCATCAAGTTCTATATATGCTGTATTTCGGAATAAGATATACCAAATGCAGCA # Right flank : TCAGCTAACTGCAGTAGCAATATCCGTTTTCGACGTGTCGCCCTCCGTGCGAAGACTGTTCCTGTATTTTTTGTATGTACCATGACTGCGGCTATAATATGCCCTTATATACTTATTATGTAATAAGGGCATATATACTATTGGGTCAGGAAAATATTTCCTGTATAAATACAAAAAAAGCCTATGGTAATAAGAGAAAGTATGGTATTATTAAAATCATACAAATGTATTTATAGGAGGGATTTTTTATGGAATTGCTTAGGAATTGGAAGGTGCACCTATTTGCGTTCATTATCATCATTATTGCTGAACTGATAGGCGTTCATTCTTTCGGTCTCGTCGTATTTTTACCGCTGCTGTATGCACTGGTAATGGGCGGCATCCTCAGTTATCCGTCTCTTGGAGTCATGAATGAAAAAATGATGGATGTAGCCGGCAAGGTCATGCCGATTGCCATGCTGGTGCTGATCGTAAAGATCGGTCTCGGCATCGGGCCGAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCCTCCGTGTGAGGATGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 59556-59019 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIY01000016.1 Megasphaera sp. An286 An286_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 59555 35 100.0 37 ................................... CGTCTTCGGAAACTACGTTAATAATGTGCGGGGTCAC 59483 35 100.0 36 ................................... TCTGAATTCGTACATTAGACACATATTGCCCATTAA 59412 35 100.0 34 ................................... AATAATTATGATATGCTTTACCAATCTGCTGATT 59343 35 100.0 37 ................................... ATTCCTCCTTTGGAATAATAAAAGAAATTTGAATAGC 59271 35 100.0 39 ................................... CTGTGATATGCTTCACCAATTTTTTCATTAGTTTTGCCA 59197 35 100.0 37 ................................... TTAGTTTTTTCGTCAAATATCGTAACCATATTCCAAT 59125 35 100.0 37 ................................... ATATGGGTTCTAAATTTAAATTAAATCCCTTTTTGTA 59053 35 82.9 0 ...........................GTT..ATG | ========== ====== ====== ====== =================================== ======================================= ================== 8 35 97.9 37 GTGCTTAACAGTCGACTCCAACAGGAGACGGACAC # Left flank : TCAGCATGTGTTGTTATATATAAACCATGAGCTGAAAGTTCTCAAATTCGCTTTCAGCTTACCAAGTATCATAGAAGATCTATGTTTACAGAGATTTTTTCACAGGCTCCCCAGTAATCATGCCGGTTTTCAGCTTTAC # Right flank : GCCGTCTTTGCACATCCTTTAATAAGTTGCTCGTAACAGTGCTATTGGGAATATGTGATGATAGTTTTTTTCTTTTGGGAATTATGAACAGAATTTGCAAGGAAAATTCTGTTTAGAACTTTTAGATTCGGATGTTTTATATGTTATATACTTAGCGCGGATTTTTACATCATAAAGGAGGCAGAGCGTATGGAAAATAATACCCCGACTTTAATTTGTGTCACAACTTCTGAGGAAGTGGTAACGGCTTGTCACACTGATTGCGGTCCTTTCTGGAGTGATGATTAAGTTGCTTATGGTTTGTGTGCAAGGAATGGAAGGTATAGCGTATCTTTCATTCCTTCATTTTATTTATGGAGAAATGTATGATTGACAGTGTGCTTTTAAAGCTGGCAGTAACGGCAGAAAATATTTCTATATACTTGAAAAGATATCTTAGGCGTAAATATGTAAATAAATTTTTGGTAAAATATAACCTTCAAGATGGCAAAGCGACTAAA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTAACAGTCGACTCCAACAGGAGACGGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 80292-84715 **** Predicted by CRISPRDetect 2.4 *** >NZ_NFIY01000008.1 Megasphaera sp. An286 An286_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 80292 32 100.0 35 ................................ CATAATGCTGTCTACTTTGCTTTTGATTGACCACA 80359 32 100.0 35 ................................ GTCCTATGGTCATGACGTAGCGCCGGACCATAATA 80426 32 100.0 35 ................................ TTCGTGTGTATATCCCCATTGACACACTCATGAGC 80493 32 100.0 34 ................................ CATCGTCTTTTGCGTGTAGAGTACGTCGAGTATG 80559 32 100.0 35 ................................ AATTCTTCGACGCAATCATTATGTATTGCCCGATA 80626 32 100.0 35 ................................ GACTTCCGGGCCATATAAATTCACTTCTGCAACGT 80693 32 100.0 34 ................................ TTTAATTTGCTCGGCATAGCTTTTATGAATAATA 80759 32 100.0 34 ................................ TGTCGGCTGGATGACATGGTAAACGTCATTTTGC 80825 32 100.0 34 ................................ TGACGAGAGGCTGGGCCGTTGCGCAAACGGTATT 80891 32 100.0 34 ................................ CTCTGCCGCTGTCGGCACATATTCCGGCTTTGGT 80957 32 100.0 35 ................................ TCGTAGTCAGACAAATTGGTATTGAGTTTAAACTG 81024 32 100.0 34 ................................ GTCTCCCGTGAATGGGTGCGATACATAGTACATT 81090 32 100.0 35 ................................ CCCGCCTAGCCGACAAGATACGAAAAGGCTTGCCG 81157 32 100.0 35 ................................ GTGTGAGTACGTCATAATACCCACCGTCCCATATG 81224 32 100.0 34 ................................ TTTCGCCTCTATATTTGATTAACGCATCTCTCAT 81290 32 100.0 34 ................................ TCTTACCTCGATACTAAATAATCAATCACGATAG 81356 32 100.0 34 ................................ TAACCTCATTTTATCTCCTCCTAAATTTTATTTT 81422 32 100.0 34 ................................ TCATATATTTCCTTGTCCGTCAATTCTCGGCCCA 81488 32 100.0 35 ................................ CTTTAGTTGTTGCCGAATATTAAAAAAATCATAAT 81555 32 100.0 36 ................................ CTGCTCGCCATAGCGGATATGGGTCTGCGCAAGGAA 81623 32 100.0 35 ................................ CGACATGGAATGGTGATGGTGTAGAGTACAAAAAA 81690 32 100.0 34 ................................ TTCCAGTACGCCGCCGTCTTGCAGCCACTCTTTC 81756 32 100.0 34 ................................ CCTTCATTTGTACGATAAATGACTAAGTCGCCGA 81822 32 100.0 35 ................................ CAATTCCGACAGCCATAAATGTCCTGCCTCGTGAA 81889 32 100.0 34 ................................ GTGCGTGGGCAAATCGTTAGGGAACTAGGTAAAA 81955 32 100.0 34 ................................ TGTCCGCAGGTTATATTGCAGCCAGCGCACGTCC 82021 32 100.0 34 ................................ CGCACGGGTCCGGCAGTATTGAATGCGCTGAACA 82087 32 100.0 35 ................................ ATTCAAAGGTAGAATTGGTAGAATGTCATCATTTC 82154 32 100.0 34 ................................ ATCTCCATTTACTCCCTGTGTTATAATGCTCCCG 82220 32 100.0 35 ................................ CGCATCCAACATATCCTTGCCGTATATATTGCCGT 82287 32 100.0 34 ................................ GGCATAGAATGAGTCAGCCGAATATAGCTTCCTT 82353 32 100.0 33 ................................ CGGTGTTGACGCTGCATCGTCAGTATTAGTCTC 82418 32 100.0 34 ................................ CTGTTTTTTCCTCTAAAATATTCCAATGAAAAAT 82484 32 100.0 34 ................................ GCCCAGTTCGACGGCGGACGAAAAGGCTTCGTCG 82550 32 100.0 34 ................................ CGACCAAAGAAGACTTGGATGCCTTTCTGGTTGA 82616 32 100.0 34 ................................ TGCTTCGGAACCATTGATAATTTCCCCTTCTAGT 82682 32 100.0 35 ................................ ATTACAATAAATCCATCACACCGCACCGTATTGGT 82749 32 100.0 35 ................................ ATACACCTTCAAAATTCCCAGCTTATAGAAGCCAT 82816 32 100.0 35 ................................ CCTTACTGGATAAGCCAAGACGGTTCCGGTAGAAG 82883 32 100.0 35 ................................ GCATCTATACGTGAATAAAGTTGATCGTTATCTAA 82950 32 100.0 35 ................................ GGCTTTCCGACTGGTGTTGCAAATCTTGAAGTTTG 83017 32 100.0 34 ................................ GCCTCATACAGTCACAGAAGGTGTTCGTAAGCTC 83083 32 100.0 35 ................................ CGTATAGCGCGTGCCACCGCGCGCATCACGTTCAT 83150 32 100.0 35 ................................ CATGCGCTCCTGATTTAGAGGAACAATGGACTTAG 83217 32 100.0 34 ................................ CTCATACGGTTTATGTATTTCTGTGTAATTTTCA 83283 32 100.0 36 ................................ AGCTCCGTACGGCTCGGCCGATGCCTGTTTATTCGG 83351 32 100.0 33 ................................ TGATACTGATGATGATGTTTTCGGCTACCAGGA 83416 32 100.0 35 ................................ ATCTGTGCAATACACAGACCGACGCTTTTTCATCG 83483 32 100.0 34 ................................ CTTTCTGCTTTTTTAAAATATAACGGGCAACATA 83549 32 100.0 34 ................................ AGCTTCGTACTCTTTAACGTCTTTTATCTTTTTT 83615 32 100.0 34 ................................ GTATTATCATGATTCGCCAATGAATTCTGCGTTT 83681 32 100.0 35 ................................ ATATTCATTAGACTGGATTCCGGCTAGAAGATTTT 83748 32 100.0 35 ................................ ATCCATAGAAACAGCGTATGCGATCACCTCGTCAA 83815 32 100.0 35 ................................ CACAATATCCAGCGGTACAAAGGGTTCGCCATCAG 83882 32 100.0 35 ................................ ACCATGAGTAATTCATTGATGTATGTCAGTACCTG 83949 32 100.0 34 ................................ CGTATCGCTGCTTGCACTCTTGCGATAAGCATTC 84015 32 96.9 33 ..........G..................... CATGTGGAGGAGGTGAAAACGTGGGTAATCTAC 84080 32 96.9 36 ..........G..................... TCCGTGACACTAATCGGCGTGGATACCAGTTCCCAA 84148 32 93.8 34 ..........G........G............ TGTGGACGCTACCGCCGTAGGTGTACCAAAGCCC 84214 32 96.9 35 ..........G..................... AAAATGTTAAAGATGGACTTTGACAACTGGAAAGA 84281 32 96.9 35 ..........G..................... CAAGAATACAGCCGTATCACTACTTGTCAACGTAA 84348 32 93.8 36 .......C.C...................... CTGGCGGGCGCGGCAGCACGAAGTCGTCCTTTGTGG 84416 32 96.9 35 .........C...................... TTGTCGCGGTCAACTTCCGTCGCCACAAAGCCGAC 84483 32 96.9 35 .........C...................... CACCAATGCGGCATATGGTTAGGGTATGTGGATTT 84550 32 96.9 35 .........C...................... AAGAATCCGTCGTCGCGGCGGTTTAAGGCGTTGCG 84617 32 96.9 35 .........C...................... ATCATGAATAAATATCATAGCATCTCCGCCGTAAC 84684 32 84.4 0 .........CGT......A...........G. | ========== ====== ====== ====== ================================ ==================================== ================== 67 32 99.2 35 GTCACCCTCTACGTGAGGGTGTGGATTGAAAT # Left flank : TATTGTCGACGTCAAAGGCGCACTGGAGCAAATTTCCTATCCGGAACAGGCTGAAGGCAGCCTTGTCATCCAAACGGAGGACCCCTTGGCCGACTGGAATACCGGCACGTTCCGCCTGACCGTTCGGCAGGGACGCGGCTCTGTAGAACGGACGGAGCAGGAGAAGCCGGACGCCGTCATGCCTGTCGGTACCCTAGCGCTGCTGGTCTTCGGCGCAATGGATCCAGCGGATCTGGCATTCAATGAAAAACTATCCGGCAGCGACAAAGCCTTGCAAACCTTGGGAGCCTTCTTCCCGACAGAAAAATGCTACATTAACGAATGGTACTAGACGATGAACACGTGCGAATGGCAAGCATCGGATAGATACCAGGGAGATTCGCACTCAAACAAGTACTATATTGTCAAAATAGACCGTGATTTTCATCAAATCAGCTGGATTAAGTTGTATCAGCTTCTATATATGCTATGTTTCGGATTAAGAGATACCAAATGTAGCT # Right flank : TCATGCGGCATCATTAGATATATTGTCAGTTTTTTGCCAGTTCAAGGCTATCAAAATATTATACATAATAAATCAAAATACCATATGTAGATATTTTTTATTAGGTATCTATCTTGAAGGTATGGTATAATCAATAATATAGAAGTGAAACGGAATATATAGGTATAGCTAATTATTTTTTAGGATCGGGACGCTATGGATATCGAATGGGATTTGCTGCTGGCGCATTGGGATGCGGAACTGAAGAAAGGGCAGTATATAAAAGACCACGCGAGGAATACGGCTGAGTATATGGCTCGTATAGGTAAATCTCTTGGGCTGGAATCTGTCTGCATTCTTATCGGCCTTCTTCATGATGCGGGAAAGGTAAATCGTGATTGGCAGAAATATATCCGCGGCGAAGCGGCGTCGGGCGGAGATCACTCTGGCGTCGGAGCTTGTTATGTCCAGTATGTATTGTATAAGTATGCAAAGAATTCCGTACCTGCTGATACGTATCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCTCTACGTGAGGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //