Array 1 6203-8750 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOXI01000059.1 Listeria monocytogenes strain 18ZQLM10 NODE_59_length_14158_cov_54.425700, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6203 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 6269 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 6335 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 6401 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 6467 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 6533 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 6599 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 6665 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 6732 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 6798 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 6864 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 6930 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 6996 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 7062 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 7128 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 7194 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 7260 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 7326 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 7392 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 7458 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 7524 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 7590 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 7656 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 7722 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 7788 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 7854 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 7920 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 7986 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 8052 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 8118 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 8184 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 8250 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 8316 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 8382 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 8448 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 8514 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 8580 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 8646 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 8712 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [8737,8743,8746] ========== ====== ====== ====== ==================================== =============================== ================== 39 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //