Array 1 20162-23749 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUIW01000037.1 Clostridium sp. AM32-2 AM32-2.Scaf37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================================== ================== 20162 29 100.0 32 ............................. CCACTTGGAGTTTAACTCTCTCGAATCGAAAA 20223 29 96.6 32 ............................C ATCACTGTAGGCACGAATGTGGCCAGGATTCT 20284 29 100.0 32 ............................. AGGTGTAGTCTCAAACATCTGGGATGGGGATA 20345 29 96.6 32 ............................C ATGAGTTCTCGAACCGTCAAATCCCAACCACT 20406 29 100.0 32 ............................. ACCGATGTCAGAATCAAGGGCATCAATAACCT 20467 29 100.0 32 ............................. CCGCGCGGTGCGCCCACTTGCCAGAAAGACGA 20528 29 96.6 32 ............................A TACCTTTTTTATAGCTTTATGCGTCCGTCTGT 20589 29 100.0 32 ............................. GTCCACCAGTGCATGTATTTCTCTGCACGAAG 20650 29 96.6 32 ............................C AGGCTAGCAGCAATTCCTGCATAGTCTATAGT 20711 29 100.0 32 ............................. GTTATCGACCATGAATTGATTGCAGGAGAGCA 20772 29 96.6 32 ............................C CAAGCAAAATACATTGCTCAATTTCAAAAAGA 20833 29 100.0 32 ............................. ACCTCACAAAGTTTACTTTTCCCCCGTCCTTA 20894 29 96.6 32 ............................C GCCCGGGATTGGGGCAAGTCTGACCGTACCGG 20955 29 96.6 32 ............................C ATGACATGCGTCTGATCGGTAACGGCTTTATC 21016 29 100.0 32 ............................. TCTTGCTTGCCGTCCTGGAGGAATTCAGACAA 21077 29 100.0 32 ............................. TTGCACACCGATAGCGCCAACTTTTTCAAAAA 21138 29 100.0 32 ............................. GTATTAAAAAAGGGTATAAAAAATACACCTCT 21199 29 100.0 32 ............................. AAGCTCCAGAAATATTGCTTTTAAAAACGATG 21260 29 100.0 32 ............................. TGGGAAACGGGGGCATACAGCCGTCAAACTTT 21321 29 100.0 32 ............................. ACACCTGGTACAATCTGCTCCACAAACCTCTG 21382 29 96.6 32 ............................C GCCCTCAATCTCGTAAATCTCGTTTTCTTTCA 21443 29 96.6 32 ............................C AGCTTAGATCAAGTTCTTGGCGGTGTGTCTGC 21504 29 100.0 32 ............................. GAAGACATGAGCAAAAATTATAAGGACTGGGA 21565 29 100.0 32 ............................. ATCCATTTACAACTACCAAAATGTTGGGACGA 21626 29 100.0 32 ............................. GAGTGCGGCGGGTGCCATTGCTGGAACCGGTG 21687 29 100.0 32 ............................. AGCTTTTTCCACGTTTTCGGGTTTTGGTCCAC 21748 29 96.6 32 ............................C GGTTCAGGATCTGTTTGATGCAATGTCAACAG 21809 29 100.0 32 ............................. CCAGGCTTCCAGCTTCTTCCGCGTTTACATGC 21870 29 96.6 32 .....................G....... CATTCCGTCACATCCTTATACCTCATTTTCGG 21931 29 96.6 32 .....................G....... ACCTTAACGCCTTCTTTTGCATCACCGCAAAG 21992 29 96.6 32 .....................G....... ATGTCTTTTGCTTCCAGGACTTCCACTAAAGT 22053 29 96.6 32 .....................G....... ATTTCACGTGCGCGCCATCTGATTAATGGCAA 22114 29 93.1 32 .....................G......A AGCCGGGTTTGTTCCATCTCCCGACTTTCCAT 22175 29 96.6 32 .....................G....... AAGCCCTGATTGGATTTGCCTTCTTCCAGGTA 22236 29 96.6 32 .....................G....... TGCCAGAAGCGTTCCGGATCTTCTTCCGCTGG 22297 29 96.6 32 .....................G....... TATGGGACAAGGAAACCCAATATACTCAGATG 22358 29 96.6 32 .....................G....... CCGGCAGACATGATTTCAGGAAAAACAGCCTA 22419 29 96.6 32 .....................G....... AGATGAGGTGTATTCAAAGTTTTCCCCTGTTT 22480 29 96.6 32 .....................G....... ATGAATGCATGGCAAGATGTGAGACAAGCGGA 22541 29 96.6 32 .....................G....... GCAGGAGCAACCATTGAGAACGGAGCGATTCT 22602 29 96.6 32 .....................G....... ATGACGCCGTACAGTGTCCACATGGACCAGAG 22663 29 96.6 32 .....................G....... GTTGAGACCAAGACCACGTAAAGCAGTGGTGG 22724 29 96.6 32 ............................C GCTGATCGGACACAATCGCTCTGCTTTCTCGC 22785 29 96.6 32 ............................C AGGTCGAAAGTTCCAAAGCCTGCGTCAAAGAT 22846 29 100.0 31 ............................. GTTTTGACAGGTTATTGTTGCCTGTTTTTTT 22906 29 96.6 32 T............................ TTGACCTAAGGGAGTATGTGCATTATAATATT 22967 29 96.6 32 ......G...................... TCCCTGGAAGATCATGGAGATCGTATCTGGTG 23028 29 93.1 32 ......A..............G....... CATGCTCATTGACATTTGCTCCATCTGAAATA 23089 29 93.1 32 .....................G......C CGAAGACCAGAGAGATTATGAGCATCGCTTTT 23150 29 96.6 32 ............................C ATCCGGAACGCTTTATGTATGTAGCTGACGAG 23211 29 89.7 32 ...........A..G......G....... AGGCAGCTTAGCCCATCCGATCAGCCCGTCGT 23272 29 86.2 32 ...........A..G.A....G....... TACACGGATACGGCGGATGAAGGCTCCGATAA 23333 29 89.7 32 ...........A..G......G....... GTGTTTACGCACTTATCAATAGGTTTACCAAA 23394 29 89.7 32 ....C......A..G.............. TTTTCACCATCAAAATACAGGATCAGCTCGCC C [23398] 23456 29 89.7 186 ...........A..T.............C CATATCATGAAGGTGTACAGAGTCCGCAAGCCGTATTCCCCACATAAACAAAGCAACATCTAATTGCCCAGTCTGTAAAATTTAAGCATTTCTTATGTGCAGATGCTCTTTGTAAAAGCAGCATTAATCTCTTGACAAACCAACTCAATATTGTTAGTGTATGGATGGATAAAATAGAACGTATCT 23671 29 65.5 21 A..G...TT....AC..A......CT..C TGATTAAATTCCAGAGATATA Deletion [23721] 23721 29 72.4 0 ...........A.CC......C.A..ATC | ========== ====== ====== ====== ============================= ========================================================================================================================================================================================== ================== 57 29 95.9 35 GTATTCCCCGCGTGAGCGGGGATGAACCT # Left flank : AGGATGAGATAATAGAAGTCGGTGCGTTAAAAATAGAGGCAGACACTGTCACAGAAGAATTTTCTATGCTTATCCAGATAAAAGGTGAAATTCCAATAGAGATACAAAAACTGACAGGCATTACAGAACAGGAATTGCAAAGTCAGGGGAGACCACTGGACGAAGTACTTAATAAATTGTTTGAATTTGCCGGAAACAGAGTTATTATAGGACATAATGTTATGTTTGATTATAATTTCATCCGCATTGCCTGTCGGAAACTGGGAATAGAAATGCAACTGGGAACTGCTTCCAAAGATACATTGGCATTGTCGCGGAGAAAAATAAAGGGGGTGAGAAGTTACCAGTTGGAAGCACTTATGAAGCATCTGGGATATGAAGTTTCAAATGCACATAGGGCATTGACGGACTGTTATCTTACTTATCAGTTATATCAGAAGTTAAATGAAATGTGAAAATGGGTGTTGGAAAAAGTGAGATAAAATAAGGCTTTTTTTAGT # Right flank : CAACAAAAGAAAGCAAAGTCTACAAAGTTGTATCGATAAGTTGTATCTCTATCCAGCCTTGACGCCCCCAGCCTGCTGTGATAAAATCAATTTAGTGTTTTAAGGAGAAGTGGCGAGAAAATCTGCCGTGAATGTGCGAGCTGCCAAGCCTTTAATAAGGCCGGCAGCTCTTTTGGCATTGTTATGCATCCTATGAAAATTGCCAGGGGATATGTATGGGAGAAAACGGACAGGAGAAAGTAATTGAAAGACAGGTATATCAGACATTAAAAAGGCGGGTACGGCTATGGCTAAAAAGATCAAGATACGGAAAGTAAGCGCATGGACTATGGGGATAACTGTAGTGCTGGCGATCATGTTTGCGATCATTTCTTATAAGAGTGAGAAAGAATTCAGAACGCTTCGCATGACTACAGAACAATATATTGCCTGTGAAAAGGCGGCAAAACAGCTGCAAAATGGTTCTGCTTATCTGACAGAGCAGGTTCGCCTGTATGCGA # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.25, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGTGAGCGGGGATGAACCT # Alternate repeat : GTATTCCCCGCGTGAGCGGGGGTGAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-37] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //