Array 1 20531-19734 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAFEHK010000038.1 Lacticaseibacillus paracasei strain 2333 NODE_38_length_25150_cov_11.030052, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     20530	    36	 100.0	    30	....................................	TCAGCCGGCCGAGTGAATCTGGCAACACCA	
     20464	    36	 100.0	    30	....................................	TATGTACGCTGATCATAATGCGGATGTGTG	
     20398	    36	 100.0	    30	....................................	TCCATTGTGACCAACGTGGTTGGCAGCGTG	
     20332	    36	  97.2	    30	...................................T	TGGCAAATTCGGCCAAGATGATGATTTTGA	
     20266	    36	 100.0	    30	....................................	AGAGCCATGAGACAAGTCACGTTTATTCAA	
     20200	    36	 100.0	    30	....................................	TACAAATGCGGGAGGTGTGGTGATATGTGA	
     20134	    36	 100.0	    30	....................................	GCTTACAACACAGCGGAGAAGTTTACACGC	
     20068	    36	 100.0	    30	....................................	CCGCCGAACGTTCACGCCCACATCACTCAA	
     20002	    36	 100.0	    30	....................................	AGAATTGCAAGAAATGGGATTAATGCAATA	
     19936	    36	 100.0	    30	....................................	ATACATACATGCCATGACGATGCTCATTTT	
     19870	    36	  97.2	     0	.........G..........................	-                             	Deletion [19835]
     19834	    35	  75.0	    30	-CAAA.....AT....A.G.................	AGGAAATTAGAGTTCTTCCCGCAATTGATG	
     19769	    36	  83.3	     0	C......................C.....A..TTC.	|                             	
==========	======	======	======	====================================	==============================	==================
        13	    36	  96.4	    28	GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	                              	       

# Left flank :   AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAAGATGGGGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATTGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTCGAACAAATCATGAAATACTGCAACGTTCATTTCGATGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAAACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCTAGAGATTTCTTTGCGGTGACTGAACAGATCGGTGATACAGAACTTCAGGTCTTTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGAGTTCGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCG
# Right flank :  AAACAGCAGTGATATTAATATTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGATGTTTCACTATTTATTGTGTGAAACAATCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCGACCTCCTCTTGTGATAGAATTCATTATATATGAAATCGTTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGTAGTACGACCAGTCAGACGAGTAACGCTAAGGTGAAGATCAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGC

# Questionable array : NO	 Score: 5.83
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-2.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [16-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//