Array 1 2169-2511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJTR010000722.1 Pyxidicoccus fallax strain CA059B NODE_722_length_5634_cov_8.69475, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================= ================== 2169 31 100.0 31 ............................... TCGCAGGCGTCGTGAGGGGGGCGGGCACGGG 2231 31 90.3 30 ...................GT.........T TGCTTGCGTCGCGATGGGCGCGTCAGCAGA 2292 31 100.0 32 ............................... TTGCAGGCGTCGCGAGAGGAGCGGGTAACGGA 2355 31 90.3 31 ...............T.A.G........... GTGATTGCATCACGAGAGGAGCAGGCAGCGG 2417 31 83.9 33 AG....T........A...G........... GTGCCTGCGTCATGAGAGGCCAGGCCGCGCAAG 2481 31 83.9 0 .......G....T.....GA.C......... | ========== ====== ====== ====== =============================== ================================= ================== 6 31 91.4 32 GCCCGCCCTCGACTCGCGTCAGCAGAGTGGG # Left flank : CCGGCCGTAGCACCGGCTGCCGCGAAGAAGGGGGCTGTGGGAGCTCCGGCGGCACCGGCCGCCGCGAAGAAGGGGGCTGCGGGGACTCCGACGGCACCGACTGCAGCGAAGAAGGCCGCGAAGCCTGCTGCTCCCGCGCCCGCCGCGAAGAAGGCAGCTGCGAAGAAGGCTCCGGCGAAGACTGCCCTGGTTGCGAAGAAGGCTCCGGCGAAGAAGGCCGCCGCGAAGAAGGCACCCGCCACGAAGGCTGCCGCCAAGAAGGGTGCGGTTGCGAAGAAGGCACCCGCGGCGAAGAAGGCTGCCGCGAAGGTCCCAGCGAAGAAGGCACCCGCGGCGAAGAAGGCTGCCGCGAAGGCCCCAGCGAAGAAGGCCGCCGCGAAGAAGGCACCAGCGGGGGGCGGAGCCGCGAAGAAGGCGGCTGCGAAGAAGGCGCCCGCGAAAAAGGCCGCCGCGAAGAAGCGCGGTCGCTGAGCATGAGCGGGAGAGGAGCGGGCCATGGG # Right flank : GGCCTTACCTCGTGTGAGGTTGGGTAGCGCAAGCCCACGCAGCCCCGGCTCGTGCATCCATCGCGAGCCGCCTCCGTGGCGAGAGGTCGGGAGTCACACTCCCGCCCCGTCTCGGCTCACGGAGCCTCTTCCGCGCGACAGGCAGGGGATGACCCCCGTGGCCCGGTCTCGCGCTCCAGTGCCGCGAGAGTCGGGCGGCACTTCATCACCGCCCGACTTCACCCCTGAACCGGAAGGCTACCCCTCCGGAAGCTGGTCGCGGCGGATGGGGCGGATGCGGTCCTCCGGCTGGGCCGTCAGCTCCGCGCCCTCTTCTTCCTCGTCGCCCCGGCGGAACTCGTGAATCTGGTCCGGCAGGATGTCGCGGAAGTCCGGCTCATCCTCCAGCGGCGGAGTCGCCGCCAGGTCCTGGTCGGTGATGTTGATTTCCTCCTCACCGGTGTCCGGATTCAGGTGGCGCAGAGAGGTGGACTCACCCACGTCCTCTGAACCGAGCTTCT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCCCTCGACTCGCGTCAGCAGAGTGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 1387-1548 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJTR010001123.1 Pyxidicoccus fallax strain CA059B NODE_1123_length_1573_cov_7.46542, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================ ================== 1387 23 100.0 45 ....................... AGACACCGCACGACGGGCCGCCGCTCCCGCTTTCAGGGGCGTCAG 1455 23 100.0 48 ....................... GTACCCGGCTCCTCCGGCCCCAAGCCCTCCGCCCTGTCCGGACGCCAC 1526 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ================================================ ================== 3 23 100.0 52 GTGGAAGGAACGTTCATTCCACG # Left flank : GTCGCGGCTGGAGGAGCGGGGCATCCTCGGCCTGGGCAGCGGGCGCAACGCGGACGCGGTGCTGCTGGCCGCCGCGCCCACCGTGTACGGCGGTGGCTACTCGGTGCCGCTGCCCGCGCAGCTGCTCACTGGCCGCATCGTCCGCTTCGCCACCTGGGTGAGGGACCAGCTCCCGCCCGGCTCCGGCAACGACGAGGTCTCCGCCATCTTCTCCCAGGCCGCCGAGGTCTTCCTCTTCCGCGGCGCCACGGAGAATGGCCAGGTGCGCGCCGAGCTCGTCTCCACCGGCGACGGCCGCGGCGTCCAGGTCAGCGCCACCGTCCGCCCGGAGCACGCCGGCACGCGCTTCCAGCTCGGCTTCGTCCTGCCCCTGCGAGGCTGAGCAGCGCCTGCGCTTCCAGCCCGGCTCCGTGCTGTCCCCGGAGCCGGGTGCTGTAGAGCACCGGGCCCACGGCCCGAGCGCGACTTCCCGTGAGGCCGCCCGTCCTGGCCGGTGCCTC # Right flank : TTGCCGGGCTCGACCCTTCCCGCCC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAAGGAACGTTCATTCCACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [20.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 7410-7227 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABJTR010000305.1 Pyxidicoccus fallax strain CA059B NODE_305_length_14678_cov_9.58477, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================== ================== 7409 24 100.0 29 ........................ GGGTGGACGCCGCCCAGGACCAGCACGCC 7356 24 95.8 30 ...T.................... AAGAAGAGGCGACCCGAGGGTCAGCAAGCC 7302 24 87.5 27 .G..T..............G.... GGAAGGGGGCCCCGGGGCCAGCGGTGT T [7297] 7250 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================== ================== 4 24 95.8 29 CAGGCGGAATGGAGCTTCCATTCC # Left flank : CACGCACCGCGGTCCGTGAAGGGCTATGAAACCCTGCCCTTCATCACCTACGACGAATGCGAGTACGTGTTCGGCCGGTGGTTCGACGCGCACTTCGGGACGCAGCCCGCGGGGATGCGCGAGGTGTGCCACTTCGAGGAACTGGAGGAGGTGCTGGAGACCGTGGCGCTGGGCCGGGGCGTGTCCGTGATTCCGGACCACGTGGCGGCCCAGGCCGTCCAACAAGGGCGCGTGAAGCTGCTGCGCCCCACGTCACGCCGGGCGACCAACGCCATCTACTCGGTGACGCGGGCGGGCGCCGCGCACCACCCGGACGTGGAGCGGCTCATCGAGGCGCTGCGAGCGGAACGCCCCACTCCGAGTGCCCCGAAGAAGACGTCAGTGGGTACCAGGCCCTCGAGCCGTTCCCGAGGAACCTCGGGCCGACGGAGGGCATGAGCAACAAACGCATCGGGCTCCACCGGGTGGACGGAGGACCCCGACTCCGCAGCTGACTGCTC # Right flank : GACAGGAGCGCCCGGGAGCGGGCCTCCGCCCCCCTGTTCATGCTGTGCCGAGGTGCCTCCTCGGCGGGACTCATCCGCGTCCTGAATCAGCCCACGGCACGCGGCGCCACCTGCGACGGCGGAGCCCACTTGGAGTCGAGCTGATGGATGGTCGGAACCGGGATGCCCAGCAGGAACATGTAGTAGAGCGCCCGGTGCTGGTCGTTGACCTCCTGCTCGAACGGGAGAATCCACCCGGTGGAGTAGAGCTGGCCTTTGAGGCTCGTGCTCGCGCTCGGCTGCGTGTACGTCAGGTCGTTGCTCTGGAGGGTGTCCAGGGCCCACTTCACCGCGCCCTTCACGACGGGGCCCGCCTGCGGTCCTCCGGCGTAGTCGGAGTCGATGGACGTCAGGCCCTCCACCGTCCACAGGCAGGGGACCACATCCAGCGTGTTGTAGTACCGCATGGCGCCCGCGGCGTTGAACGTCGAGTCGAAGGACGCAGCAAAGGCCGGGTTGCC # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGGCGGAATGGAGCTTCCATTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //