Array 1 708982-709809 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LR793265.1 Streptococcus salivarius isolate clinical strain from anonymous patient of Limoges Hospital, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    708982	    36	 100.0	    31	....................................	TTTTCGACTTTTAAAGCACTTGCGAATTCAA	
    709049	    36	 100.0	    30	....................................	TTGAACGAGTAGTCAGTGTTTCGTTTGACT 	
    709115	    36	 100.0	    29	....................................	AATTGCGATACGTATTGCGTCAAGAATAT  	
    709180	    36	 100.0	    30	....................................	ATCAATCATCTCAATCTTTTGTTCTGTCTG 	
    709246	    36	 100.0	    30	....................................	TTTAGGGATGTTCGTTAGTGATTTGGTAGA 	
    709312	    36	 100.0	    30	....................................	TTTATTTTGTTGCTATATAAACATGCTACT 	
    709378	    36	 100.0	    30	....................................	AATATGGTACAACTCCGAAGCAAATAACTT 	
    709444	    36	 100.0	    30	....................................	TATTCTGTTATTTCAATTTCTTTCAGTACC 	
    709510	    36	 100.0	    30	....................................	TGATACGTACCTTTGCTTAGTGTGGTCTCA 	
    709576	    36	 100.0	    30	....................................	GAGGTTAGAAGGTATCATTTCTGACGAGCT 	
    709642	    36	 100.0	    30	....................................	TCCACGCATCAAAAAGTTCACGCGGTAAGG 	
    709708	    36	 100.0	    30	....................................	AAAATCAACGGTTTAGGCTTATCTACGTTG 	
    709774	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
        13	    36	 100.0	    30	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	                               	       

# Left flank :   TTGATAGTTTTATTTCAGAGGAATCTTATGGTAGTTTTTATAAGCAAATTGGTCAGCTAGTCAAAAAGTATCCAAACCTAACCTTTATTATATTTCCAAGTGACCAAGGCTATTTAAAGATTGATGAAGAGAGTAGTAGGTTCGTCAATATTTTATCTGATCAGGTAGAACATTTGTATGATATTGAGTTTATGTATGAAAGTGTAGCGAAACATTATCCAAGTAATAATTTTCCGACGCGAGAAGGTTTTAGGATGTCCTTAGAGACTGTGACGCCTTATTTGTTAACAAAAATGACGAGACAACCTAGTCTCTCACTCGTTGATTCAGTAATTTTGAATATCTTAAATCAGTTGTTTCACTTTAACTATTGTATAGGATATTCTCAGACACCTGATGAGGAGCTATTACATAGATATTTAGAAAGTAAGAATTGACAAGTACAGTGATTGATTCTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG
# Right flank :  CCCGTGTCCATGCTCCATACGCACTTGAGTGTTTTTGTACTCTCAAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTAAGTAACTGTACAACAGAATTTGGTGAAATAAGCGAAGTATATGCGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAGGTTGATTGATTCAACTTAAAAAGCCAGTTCAACTGAACTTGGCTTTTTAAAATACACGATATACATAAGGATTGTCAGGCTGACCAACCTCTTTGACCTCAGTCAAATTGAGAATAGGCAGGCTCTGTTTGAGATTTTGATAGTAATCCACAGTGATGGTACCAGTGACTTTTACCCAGGTATTGTCCTTAAAGGTTTGGTCACTTCCTGTCGTCGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATTCCGAAACGGAAGATGAACTGATAACCCTTGGTTTGTGGGTCATTGTAGACAAA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.77,0.37   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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