Array 1 1-1064 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFA01000028.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N43836 N43836_contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 27 93.1 32 --........................... GCTGAGATAATTGCCGATCATCTTGAAGACAT 60 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 121 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 182 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 243 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 304 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 365 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 427 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 489 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 550 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 611 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 672 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 733 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 794 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 855 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 916 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 977 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 1038 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 636-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFA01000014.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N43836 N43836_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 635 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 574 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 513 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 452 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 391 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 330 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 269 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 208 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 147 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 86 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GGACAGGACTTACGACCGGCTGGACTACGCATCGTGTTCCCCGCGCCAGCGGGGATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 19175-17317 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFA01000014.1 Salmonella enterica subsp. enterica serovar Hadar strain CVM N43836 N43836_contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19174 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 19113 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 19052 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 18991 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 18930 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 18869 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 18808 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 18747 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 18686 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 18625 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 18564 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 18503 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 18442 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 18381 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 18320 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 18259 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 18198 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 18137 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 18076 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 18015 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 17954 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 17893 29 100.0 32 ............................. CCAGCTTACACTATTTACGACGTTATTGAGCA 17832 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 17771 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 17710 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 17649 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 17588 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 17527 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 17466 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 17405 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 17344 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //