Array 1 504-1529 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QSWN01000014.1 Neisseria meningitidis strain M04486 M04486_HUY3652A27_cleaned_ctg_9568, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
       504	    36	  97.2	    30	........G...........................	GGACGGCGGTTCTAAAATATGAAAACTCAA	
       570	    36	 100.0	    30	....................................	AAACTCAACGCATCTAACATAGTTCACACT	
       636	    36	 100.0	    30	....................................	GCCCCTGCTCGCGCACCGCCGCAACCTGCC	
       702	    36	 100.0	    30	....................................	GGTCAGATTACAACAACGTTGAGCGTGTGT	
       768	    36	 100.0	    30	....................................	TCTTTTGACAACAATTTCACTGGCGAAATG	
       834	    36	 100.0	    30	....................................	TCATTAAATGATGTATCACAAGCACTTTTT	
       900	    36	 100.0	    30	....................................	TACATCGGCGGGATGTTTCAGTTCGTTTAT	
       966	    36	 100.0	    30	....................................	ATAAATCAATACCGTGAAAACCTCATGTGT	
      1032	    36	 100.0	    30	....................................	ACGGCTGCCGCAACGCCGCCCGAAACCATC	
      1098	    36	 100.0	    30	....................................	GAGCATCTATTAGGGGTGAAGGTAGATCTT	
      1164	    36	 100.0	    30	....................................	ACAAATCAATACCATGAAAACCCCATGCGT	
      1230	    36	 100.0	    30	....................................	AGACTTAGCACGTTTAACTTGCTTAACAAG	
      1296	    36	 100.0	    30	....................................	AAAAACTTTTTAGGGGGTCGGAAAAAATGA	
      1362	    36	 100.0	    30	....................................	AGTAAGATGAGAAAATTATTGGGGGGTGGC	
      1428	    36	 100.0	    30	....................................	TGTACGACTCGGCTCAGGCACGCAACAAGT	
      1494	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	  99.8	    30	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGAATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.68   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//