Array 1 304526-304824 **** Predicted by CRISPRDetect 2.4 *** >NC_014824.1 Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 304526 33 100.0 36 ................................. CAGCCATATCCTTTATCAGCCGTCCGCCGCATTCGG 304595 33 97.0 32 G................................ GTGTAAAAGCCGTCAACATAAAAACCACTACT 304660 33 100.0 32 ................................. AACAGACGTACAGTTTCAAGGGCGATTGAGAT 304725 33 100.0 34 ................................. AAGTCATTTGCAACAGAGATTTTATTAAAGTGGA 304792 33 84.8 0 G...................A.......A.A.A | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 96.4 34 AGATGCAATCTGTACAGGCAGGTAAATTGCGAG # Left flank : TAGTTATGTATAATTAAGCGCACTAAACTTCGATTTAGTGCGATAATACCGTGTGAAATTTAATGATGAAAAGCAATTGCTGGAAAGCGATTCTCCTGTTCAAAACTGAAAACTTATGTAATTGCGGTTCTCATAGGAGGAAATTTTTTGTTTCGTTAGGGAAGTGCCACGAAAATCAAAACGATAACAAAAAAAATCGGTCAATCAATAATTCATAAGAGAAAAAACGCTTTTATACTATTAGAAAATTTTTCTCTTGCATTATAACTTCATATATGTTATAATGACTATAGAAAATCAATTTCATTGATCAGTAATACAGGGCGAATGATAAGCTCACGTTAAAATGCTGGGAGATTCGCACTTTATTTCGGGCGGCTCGGCGTCCGTAAATCGAGAAGTGCTCGTAAGTCTACAAATCTGTAGCCGAAGTAACTCTCGATAAGGTAAAAGCAATACACATTCAATCCGTGTATTCAATTTTATTTGTATAATTATGC # Right flank : AAAACGAATTAAAAATTTTCCATCGAAAACCTTGACAGGGCCTACTTTATGATGTATAATATTATTAAAGTCAAATTAACTTGTTAATAAGAAGTACCGTTCGTCTTATCTTTCAAGTGTCATTTGGCTTTTATTTTTTTGCAATCTTTTCGGCTTCAGAAGTCTTCATATTATAATAGTATCATAACCAAGATCGTTTAACTGCCTGCAGCAATTGGAGCTGTAGAGACAAAAACAGATCTTGGCTTTTTTTATTGTAGTAAATTTTCTCCTATAATAAAAATACAACATTCAAACAAATGGTAAGAAAAAGAAAGGAAATGTAAAGATGAACAAATTCGGAAAGATCGTATCCTCGCTGACAGCACTGATGATATTGGGGAGTACATTCACAGTAAATGCAGGCGCTGAAACTTTTTATACAAAAGGGGATATAAACAACAGCGGCACAGTAAATATTACGGATATCATTAAGATAGCTTCTCATATAAAAAGCAAAA # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGATGCAATCTGTACAGGCAGGTAAATTGCGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1313206-1317474 **** Predicted by CRISPRDetect 2.4 *** >NC_014833.1 Ruminococcus albus 7 = DSM 20455, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1313206 33 100.0 33 ................................. TCGTCACAAGGTAGCAAGACTGCGTGTTGAGAA 1313272 33 100.0 34 ................................. TAGCATAGCCTTATCATTACAATTAAGTTTGCTA 1313339 33 100.0 35 ................................. TGTCCTGCAAGTATCTGTGCGGTCTGTGCTGTCTG 1313407 33 100.0 34 ................................. TGTGAGTTGTTGAGCCAAGGGTAGAGGTAATCCA 1313474 33 100.0 34 ................................. TGCAGACCAACGTTCTCGCGCTGTGCCTGTGCCA 1313541 33 100.0 34 ................................. CGACCTCTCACATAGCTATCTATGGTATCGCATA 1313608 33 100.0 34 ................................. TCGATACACTGCTTGATAATCTTACCGTGTTATG 1313675 33 100.0 34 ................................. TGCAGACCAACGTTCTCGCGCTGTGCCTGTGCCA 1313742 33 100.0 33 ................................. TGCCATTCAAGGTCAAAGTATATCGGATATTCA 1313808 33 100.0 35 ................................. ATAGCGTGTGCCGTTCTGCTTTACCTTATCAACGG 1313876 33 100.0 34 ................................. GCAAGGGTGCGGATGATCTTCGTGGGTATCTGAT 1313943 33 100.0 36 ................................. GACTGCACAGCCCATAAGTATCTCGGGGCAGTGAAC 1314012 33 100.0 35 ................................. TGCGGCTTTGGTGCGCACCTAGAAAAAGGTGAAGG 1314080 33 100.0 35 ................................. AACGCTGTGATGATCTGCAGGATAACGCGGAAGTC 1314148 33 100.0 33 ................................. AGCGGTAGAATATCGCGGTTGATAGCCTCGATC 1314214 33 100.0 35 ................................. TATCGTCCAGAAAAACATAGCATAAGCCTGTGGCA 1314282 33 100.0 33 ................................. TCTCTGCCCTTAGGTTTGCAATAAACGTTTCCC 1314348 33 100.0 34 ................................. AAGATATCCCTGTATCTGATTTCCAAAGCTTACA 1314415 33 100.0 37 ................................. TATGCCCTCCCGCTTGGTGTGCTCTATCTTCCGCTTC 1314485 33 100.0 33 ................................. AGTTATATAATGCTTTGTGCCGTTCTTATCTTC 1314551 33 100.0 35 ................................. CATAGCGTAACAATTGCCGCTATCAAGCCCGCTAT 1314619 33 100.0 35 ................................. AACCTTAGAGAACACGCCACCTTCGCCGAGGATGA 1314687 33 100.0 33 ................................. GTTAACAACAAGCACCGTTTTATCGTACTCAGG 1314753 33 100.0 35 ................................. GTGATACAAATCAACCACTTCGGAGGCGGTTATCG 1314821 33 100.0 36 ................................. TGTGTCTGACAGGTTGCGAGCCTGTTGTCACAGCAG 1314890 33 100.0 34 ................................. TTGTACGGTACCACATACGCGAAACCAAGTGTCT 1314957 33 100.0 35 ................................. TTGAAGTGAACATTTTTGAATAAATCGCGTTTGTA 1315025 33 100.0 34 ................................. AATTTCGTAGTGCTATCAGCGCAATAACTGTAAC 1315092 33 100.0 36 ................................. TTGCATGAGTTTAAGAGGGAGCAAAAATAAATGACA 1315161 33 100.0 35 ................................. TCCGTAGAAAACATTGTAAAAATTTCGGGCGTGGC 1315229 33 100.0 35 ................................. CGCTTGCGCCTGTGCAAGTGCGTTTTGTGCCTTTT 1315297 33 100.0 34 ................................. AGCTAATGCTATATCGTAAGTTTGAGCCAACACT 1315364 33 100.0 35 ................................. ACAACGGTGTGTTTGTTTTTCCCCCGAATTTGATA 1315432 33 100.0 34 ................................. ACTAGCAATATGACAACGGAAGAAACCGTAAACC 1315499 33 100.0 34 ................................. TGTTTACATACGCATTATATCACATATTTGCCCG 1315566 33 100.0 34 ................................. TCTTAACGCGTCCATTTCTTCCGCTGTCGCGCCC 1315633 33 100.0 34 ................................. TATCGTGTACGATATTTTCCGTATCGGAAATCTT 1315700 33 97.0 33 .......T......................... ACTTAACGCGGCTTGATACTGTTCGGGTGTCAA 1315766 33 100.0 33 ................................. GACCGTCCAATTATTTTCTTTCATAGCCTTTTC 1315832 33 100.0 34 ................................. GATAACCCACAAACTTTTAATATATCTATAATTT 1315899 33 100.0 33 ................................. ACGTTCACACCCCCACAAATGAATTTTTGTAGT 1315965 33 100.0 35 ................................. TGTGTTCACGCCCGCTTTTTCCATTTGTGCAATTA 1316033 33 100.0 35 ................................. GTATGATTGCACATAAAACGTGTGGAAAAATTGTT 1316101 33 100.0 35 ................................. GTCCACGCGGTTGTGAATGTGGTTTTAAACCACGT 1316169 33 100.0 34 ................................. TCCGCCAACACTGCATAATGTTCTGGCGAAAGAA 1316236 33 100.0 34 ................................. TTTGCTTCTGCGCTGTTTTCGCCGTACTGTTCAG 1316303 33 100.0 34 ................................. ATAAACGGTCCAGACGTATCCTTAAAATGGCAGA 1316370 33 100.0 34 ................................. CATTGGGAATCATCTCCTTTGCAAAAATGGGTTA 1316437 33 100.0 33 ................................. TCTTCTGTTTTCATGCCATGTTTGTTGGATATT 1316503 33 100.0 34 ................................. TTTGCAGTTGAGTTCCAGTGCCTTGCGTACCCGG 1316570 33 100.0 35 ................................. TTAAAACATTTCGGGCAGAAAAAACTTAGAGTTGT 1316638 33 97.0 34 ..................G.............. TGCTATGCCCTCAAATGTTTTCGCACGATTTCTA 1316705 33 100.0 33 ................................. ATTGGATTTACCGTCAAGCATATCTGCTTTCGG 1316771 33 100.0 34 ................................. TCTGAACCGCCTCCGCCTGTGCCATCGCCATAAG 1316838 33 100.0 36 ................................. TTTATGAACTTAAACAATCCCCAAAAGTTGTCCGCA 1316907 33 100.0 33 ................................. GACCAGTCTGTACCGTTTGAACACAGGTCTATC 1316973 33 100.0 36 ................................. AATATGTATATTGCTCGCGCTTGATGAATCTACGCC 1317042 33 100.0 33 ................................. AGCAGTTACTACGCCGCCCGAAGTTACGGTTGC 1317108 33 100.0 33 ................................. ATCAACGGTTAGTGTCATAGTGCTGTTACCGTT 1317174 33 100.0 34 ................................. AATAATATATATCCTGGACTAACTGAGGTTCAGG 1317241 33 100.0 35 ................................. TCTCTAACCCAGCTCAGAAGTTCAAAAAGACAAAG 1317309 33 100.0 34 ................................. AAATCAGCTATGCCCGATGTGGTATTGTAGCCTG 1317376 33 100.0 33 ................................. ATTCGTCCGCCCCCTCGATGATTAGTGTGCAAC 1317442 33 97.0 0 ................................G | ========== ====== ====== ====== ================================= ===================================== ================== 64 33 99.9 34 GTCTCTCCCCACACGGGGAGAGTGGATTGAAAT # Left flank : ATAAGAGGCGATCTCGACGCTTATCCTCCTTTTATGTGGAAGTGATATTATGCTGGTATTGATAACTTATGATGTCAGCACGGCAGACAATGCAGGAAAAAAACGCCTGCGTCGTGTTGCAAAACAATGTGTAAACTACGGAGTGCGAGTTCAGAATTCGGTTTTTGAATGTGAACTTGACCCTGCACAATGCAGACTTCTGAAACAAAAGCTAACTGAAGAAATAGATGAAACAAAAGATAGTTTGCGCTTCTACTATCTTGGCAATATCAAAAAAGCCAAGGTGGAACACGTCGGTTCAAAACAGACACTCAAAGTCGATGAGCCGCTAATTTTCTGATGCGAATCACAAGTTTCCATAAAACTTCAGGTGTATTCGCACCGAAATAATGTTCGTTTTTTCGTTATATTCAACTCTGCTGAATAAATGATGAAACGATTATTGTCAAAAATGTTCGATTCCGTAGCTGCTGATTTTTACGGAAATGTTCATTTTTGCT # Right flank : GTAAGCGTATAACCCCCCGCATCATAAAAGCAAACAGCCGGGCAGATAACACCCGGCCGTAACATCATATTCTGGCTTTGATTTCTCCATTTCTCTTTGCGTCCATGTATATTTCTTTGAAATCAGCTTTGCTGTTCGGACCGAATATGATCGGCATAACAGATACCAGGCCATCGGAAATGATCGCATTTTTAAATGGCAGAAGCGCTGCATCAAGCAAAGTTGGCATCGGTGCATTTCTCAGCATTTCCTCCCAACTGCTGACAATGCCGTTTACAAGAAAAACAGAATTGTCATCGATCGATATAAATACCGATCCCTTTTTCCAATGTCGCTCAATGATAAATCTGCCGGTGATGCACCCTTTCCAGCTTTTAAGTATCTCCATGTGTTCTTCGGGCAGATCCGATCGCTCAAGATAATCATCAATGATCCATGTCCGTTCCCATAAAAAGTGGGCAACCTCCGCAGCGTCCTGTGGGTCGATCATTCCTTGCCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCCCACACGGGGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 1325938-1325369 **** Predicted by CRISPRDetect 2.4 *** >NC_014833.1 Ruminococcus albus 7 = DSM 20455, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1325937 33 100.0 34 ................................. GCCACTATGGTCTTTGTTGCCAAACTGCGACTCT 1325870 33 100.0 33 ................................. TCCCAAGAAAAATACATTTGTTCAGTCCCATTG 1325804 33 100.0 34 ................................. CCAAATGCAGTACTTGCAATCGGGATCATCCTTC 1325737 33 100.0 34 ................................. TCGATTATCTCATCTTTGTGGGCTATAACCTTTT 1325670 33 100.0 34 ................................. CAGTAATGCAATTAACATATCGTAACCCCATGCT 1325603 33 100.0 33 ................................. GCCGTATCCCTCGCACGTTGCGAGGGTATACAA 1325537 33 100.0 36 ................................. GCAACAAGACCGAACGTGAGTTGATATCTGTCAAGG 1325468 33 100.0 34 ................................. TTTACTCGCCTTGTTGTCTGACTTTCGCCAAAAT 1325401 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 100.0 34 GTCTCTCCCCACACGGGGAGAGTGGATTGAAAT # Left flank : GCATAGCTCATGCACCAAAGCGGTCAGAGTGTCCGCAGATATATCTGCCGGAAGAGATATTTGAAGTCCGTTTTTTCTCAATGCGGATATTTTCGTTTGAGCAAGGAACTGATACAGGAACGATGGTCGGAGAATTTTCGATATACTTTTCACGAACTTTTCTTAGGCGGTTGTAATACGTGTTTGGCTTGATCCCTTTTTCTTTGCACCATTCCCGGATCGTCAGACCGCTTGCCTGCTGTGCTTTGATCTGCGCAGACCATTCCTGAAGCTGCATTTCTTTTTTGATTGTTGTGATGGATGTTGTTTTGTCCATACCTGTTACCTCCTTGTCTAATCGTCTCCAATGAACTCCATGGATCAATTTGGATTATTCAATTTACTTCATGGTGTTCCTTGGAGTTTATTATACTTTATTAGACTTCGGTGGGGTAGGTGCTGGGGGTTATACGCTTACGATTGAAATACGCATACAGTTTCCGAATTGCCGCCGATCTCTT # Right flank : ATCTGAATGTCTAATCGTAATGACAACATCGTCAAATACGTTGAGGATACGGTATTCATGGCTTGATCTTCGTTCATTGATCATTCTTTAAATATAATATGGATTGCTCAATTTTGTATAGCCTCACTTGACATATTGCACAAATTGTGCTATAATCATAAACAAGGATATTGATGATTGTGACGGTGAATTGTAATTAAAAACATATGGGAGGAGGATAAACCTATGAATAAACGTATAATTAGTATTATTCTCTCTTGTTCTATTCTTTTACAAAATTCACAGTTAGCAGTTTTTGCTCAAGAAGAATCATCTTCACTTCCTAACGATAATTATACGGTTGATATTAGCGACAATGTTGATATAACGAGCATTGTAATAGCTAACCGTATGACAGGAGCAGATGTAAGAGCTCAAAGAAAATTTACGGCTGCTCAAGGTCATGGTTTTGCTGCTGAAAGAGGCAATAACCTTATTGATAAAATTAAAGGATCCAATGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCCCACACGGGGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA //