Array 1 20672-19941 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LKFO01000075.1 Lacticaseibacillus paracasei strain FAM18129 FAM18129_scaffold_0075, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     20671	    36	 100.0	    30	....................................	TCAGCCGGCCGAGTGAATCTGGCAACACCA	
     20605	    36	 100.0	    30	....................................	TATGTACGCTGATCATAATGCGGATGTGTG	
     20539	    36	 100.0	    30	....................................	TCCATTGTGACCAACGTGGTTGGCAGCGTG	
     20473	    36	 100.0	    30	....................................	TGGCAAATTCGGCCAAGATGATGATTTTGA	
     20407	    36	 100.0	    30	....................................	TACAAATGCGGGAGGTGTGGTGATATGTGA	
     20341	    36	 100.0	    30	....................................	GCTTACAACACAGCGGAGAAGTTTACACGC	
     20275	    36	 100.0	    30	....................................	CCGCCGAACGTTCACGCCCACATCACTCAA	
     20209	    36	 100.0	    30	....................................	AGAATTGCAAGAAATGGGATTAATGCAATA	
     20143	    36	 100.0	    30	....................................	ATACATACATGCCATGACGATGCTCATTTT	
     20077	    36	  97.2	     0	.........G..........................	-                             	Deletion [20042]
     20041	    35	  75.0	    30	-CAAA.....AT....A.G.................	AGGAAATTAGAGTTCTTCCCGCAATTGATG	
     19976	    36	  83.3	     0	C......................C.....A..TTC.	|                             	
==========	======	======	======	====================================	==============================	==================
        12	    36	  96.3	    27	GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	                              	       

# Left flank :   AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAAGATGGGGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATTGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTCGAACAAATCATGAAATACTGCAACGTTCATTTCGATGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAAACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCTAGAGATTTCTTTGCGGTGACTGAACAGATCGGTGATACAGAACTTCAGGTCTTTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGAGTTCGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCG
# Right flank :  AAACAGCAGTGATATTAATATTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGATGTTTCACTATTTATTGTGTGAAACAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCGACCTCCTCTTGTGATAGAATTCATTATATATGAAATCGTTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGTAGTACGACCAGTCAGACGAGTAACGCTAAGGTGAAGATCAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGC

# Questionable array : NO	 Score: 5.80
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-2.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [16-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,5.28   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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