Array 1 102082-103134 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRH010000002.1 Anabaena variabilis FACHB-171 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 102082 35 97.1 36 .............................C..... AAAAAAAAGCCGCATTTAATTTGGCAAATTCCAATG 102153 35 97.1 39 .............................C..... CGGGCTTGTTACCTTAGAGATACATTAAAATTAAATCCA 102227 35 97.1 36 .............................C..... TTTTGGTTTACGTTCCTATTGATAACCAGTTTGAAG 102298 35 97.1 35 .............................C..... CTGAAGAGATTGAAAGACTCAAACGCCAGGCCGAA 102368 35 97.1 39 .............................C..... CGTTTTGTTGCTCGCATTATCGTTTCTTGCATTTTATTG 102442 35 97.1 40 .............................C..... TTACAAACTTTTTCTATCCACCAGTTCCGTTTTTTATTAG 102517 35 100.0 39 ................................... CTAGTTGGTCCGCTTTCAAGCCCAACAAATTATGATAGT 102591 35 100.0 38 ................................... ATAATAATTTTCTTTATATATTTCCTTGTCTTTTATTT 102664 35 100.0 35 ................................... AGAAATTTCTATCGGAGGTGTAGGCGCACAATAAA 102734 35 100.0 34 ................................... TGGTGGAACAAGTTTTGTCGGAATCGGTGAAAAC 102803 35 100.0 39 ................................... ACTCTCCGCTTTGCTTGTTGTTGCCATTAAGGCACAAGA 102877 35 100.0 39 ................................... TATATCTAGAATTCCAGGAATAAATTTTCTAGGAAGCGT 102951 35 100.0 40 ................................... ACATATAATCGATGCAGAAATTCAAGCTTTTCTTAGCAGT 103026 35 100.0 39 ................................... CTTTTTAATAAGTTAGACCCAAACACACAATTTCTGATA 103100 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 15 35 98.8 38 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Left flank : AATCTGTAATTTTATTTTCTACTTCTCGGTTAATTAATTGACTGGCTAATTTTTTCGCATCATCTAAATTTTTACCTATAGCAAAGGCTAAAAACCCACCCAAAAATGCAAATACTACTAAGGTAAATTGCATTGCAGCAACAAATCTGTTAAAGCTTTCACCTAGTTGACCATTGGTAGCCTTGAGAAATTCTAACTGGCTTTTGAGTAGTTCAATATCATTGATATTTTTTGCCGGATTTACCACTGGTGAAGGTGTGGTTGTAGGTGTTGGAGTTTGGGCAATAACTAAATCCCAAAGGTGGGATAAATCAATTGTAGGTAGCCAATCCATAGGTATTTTGTTGATGGCGATTACTTCTCTATTTAATCATGTGCGATCGCCTGCATTATTTTATTCCAACTTTAACTTAAGCGATCGCAACTTCCCTTAAGTTTCAATAGTGGTTTTACTGTGCGATCGCATTACATCACCGCTACTAAATCCCGCTATTGATTAT # Right flank : CCCTACCTGTTCAGAAGCCTTGCCACGATTGAGTTTGAGATAGGTCAATCTGAGGGGGTCATTTTTTCAGCCCAATAATTGATAAACTCTGTCAATAAACCACTTTCTAATGAGCCTCAAACGCTTACTCAGCAAGCTATCTGAGGGGGTCAACGAAAGAATCAGGGTTTCAGCCGTTGCCTGACCCCCTCAGATGCTTATCATTCAACAAAAAACTATAAGTTTGCCAAATGAATCAGAGTAAATGGAAATACTTAATCTAAGTATTATTAACTTTTCATGGTTCAAAAACTCTGATGATCAGTGTATAGAAACCTACTAAAAAAGTCAAGGTGAAGCATAAAGTATAAAATTACGCTCCCTTCCTTCCCCTTTTAAGCCTACTGTGTACACACAAGCCCACGAGATGTTCCCTACGGTTAGGCTTATACCATTTCACTAAAATTCTGATACAGATCCAAATCCAGAAACCTTTGCAAAATATAGGTTTCTTAATTTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Alternate repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 107587-107332 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRH010000002.1 Anabaena variabilis FACHB-171 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 107586 35 97.1 37 ....T.............................. CAATTATCCCCCAAGACCAATCCCCTGAAAGGGGAAG 107514 35 100.0 38 ................................... AGTTACACCAGTTGGATCTGGACTTGGTATTGGGACAT 107441 35 100.0 40 ................................... AGATGTGGTTGAAACTCAACCCGAAGTGGTTGAAAATCAG 107366 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 4 35 99.3 39 GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Left flank : GATTATTTAAATTGGTCGCAATTTGAAAATGTTCGGCTCCAAAAATACTTTTCCAAAGTTCCAGGGATTCTAAAAAATATTTTTCGGCTTGTGAGTAATTCCCTTGTGAATAGTATAGTGCTGCTAGATTATTTAAAGATTGGGCAACATCAGGATGCTCTGAACCTAAGAGATTTTTTCTAATAGTTAAGGCTTGTAAATACAAGGGATTGGCTTCTAAATAACATCCTTGTATGCGATATAATTCTGCTAAGTTATTCAAGCTATCACAATATTCTGAATACTCTGTTAGCTGCTGGCTTTTCCCTAAGTTGACAGCTTGTTGGGCAATAATTATCGCTTGCTTTAAGTTTCCTTGTCCAGCAAGTTGCACAACCTGTAAGTTAAGTTGATTTAATTGTTTTAAGAGTTTTTTCATCTGCTAGTTCCAGATGTTTGTATATTTTTTAGGTTTGATTTTTCAATCAGTTATTTATTTTATCTAAAATCGTTCATCATCA # Right flank : CCTACCCTTGTAGAAGCATTACTACGAGAGGGTTTGAAGGGGTCATTTTAGCGGGGGGTACATTTTACCTGTCAACAAGCACAAATTATTGACAATTGATGACTCATGCACCCTATTGAAACCCTTGTACAGTAAGCGATTAGCGGGGGTCAACGAAAGAATCAGTGTTTTGGCGATCGCTCTACCCCCGCTAAAAACTTACGTATGGAAAGTAAAACTAAGCACTTTTGCGTTTATTTTGAAACCTGATATTAAGTTTTCAAGGTTCTGTTGCTATTGAGCAGTAGTATAACAAACTACTTGAAGTTTTGAACCCTTAAACTATTAACTTTTCTATCATGCAGTAATCATGTAATCTGTGTACCAAATTTGATATTCTCCGCCTCCAGTCACATATTCTAGTAACGCCACCAGATGACTTGCTTCTAATTCCAAAGGGTCATTATCTCCTGGCGGTAGCCAGTCTAATTCAGGTACTTCGTTGGTAAAAACTGCGATAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 10661-10043 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRH010000001.1 Anabaena variabilis FACHB-171 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 10660 37 100.0 34 ..................................... AAGCTTTTTGCGGGATGGGGCAAGTGTGGGTGAA 10589 37 100.0 34 ..................................... CGGGCAATGCAGGAGTGCAACCCGACCAAGACCG 10518 37 100.0 44 ..................................... AAGTAAAGACCTATTTTACCTAATAACCAGTCTCTACCAGCTTG 10437 37 100.0 36 ..................................... AAGTAAAGACCCAACCGACGAAGCTCCTTTTTAAGA 10364 37 100.0 36 ..................................... ATCATTGATTTCATACACAACTCGCACAGCTATAAG 10291 37 100.0 33 ..................................... TTGATTTCGGTTATTGCGTTATCCCTCCTAAAA 10221 37 100.0 35 ..................................... CAACGACTAGGGCATGGAGTCTAGACCAGACGGTA 10149 37 100.0 33 ..................................... CTATTTCCTGAAACGATTTAGACAAGGATCTTT 10079 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 9 37 100.0 36 GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC # Left flank : GTGCTATTGTCACACTTGCTAGTAATTTGGAAATGAGTGTAGTGGCTGAAGGTGTAGAAACAGTAAACCAGTTGGTACAACTACAGTTATTAAAGTGTGACCAAGCCCAAGGATATTTGTTCTCCAAGCCCTTAAGTAGTGACAAAGTTAGCTTGTTATTGGCTGCAAAGATAGAATTTTAGAACACAAAATCTTGGCTTGTCCGCCATATTCAGTTTGGAATCAGAAAATTCTACGGAAACAACGAGCTAGCGTCAACCTATAGGTGTTTTCCCGTTAACCTCAATTTTTATGGCTGAATGCCTTATCCTCTATACATTTGAATGTAGTTGACACCTTCCAAGGGTTGACGCAAATTCTGAAAACCTTGCTATGACTAATTTCCAGAATTTATTCCCATTGTTCCTCTTGACAACCCAAGGTCTGAAAAGTTATCTTTGCCACAGATTAACGCAACTGAACCTTGAAAACCAAATACAGCAATACTTCTGTAACTAGCC # Right flank : AACATGAAATTTCAAACTCTTTATCCTCTCTGCGTCTCTGCGTGATAGAAATCATCCCGCATTGATGCAACGCGCCCAAGCCCCGATTAAGTCTTGACTTGTTCCCTGTATACCCTGGGTGTAATACCCATGAGTTTACGAAATACATTTGTGAAGTGGCTTTGGCTTTGAAAGCCGACTTGGGTGCATATTTGCTCTATGGTTTTGTTAGTGCTACCCAGTAACTTTTTTGCGCGTTCAATTCGGCAATTCATAACATACTGATGTGGTGCAAAACCTGTTGATTGCTTAAATTGGCGCGAAAAGTAATACATACTCATTCCTACTGCTGTGGAAATATCGACCAAAGTCAAATCTTGGTCAAGGTTTTCATGAATGTAGGAAATTGCTTGCCTGAGTTTCCAGTGTGAAAGTCCTTTATGATGATGGTCGTCAAGGATTGTTCCACCTGTTACGCAATAGTGTTTGAGTAGGTGAATACACAGCGTGGTTGTTAGAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACACCATATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 2 332695-333961 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRH010000001.1 Anabaena variabilis FACHB-171 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================= ================== 332695 37 100.0 34 ..................................... GCTCTTACTGATGCCACATCAATCGCTGTAGATG 332766 37 100.0 34 ..................................... TGATGTCTAACCCCAGCAATCTAATCGCTGGCGG 332837 37 100.0 36 ..................................... GAATCTTCACCCACCCCCCCCCATCCCGCAAAAAAC 332910 37 100.0 40 ..................................... TGTTTACTTAGCAAAGAATAGCTTAAATACTTTTGCTATG 332987 37 100.0 34 ..................................... AAGAGAAGAGGCAAAGTGAGCCACCCCCCTAGCA 333058 37 100.0 36 ..................................... ACCCTCAGCCTCTCTATCACGCAATCCAAAGCTAAA 333131 37 100.0 34 ..................................... TGACTGTATTAGACGATTTGCTGATAATGTGTGT 333202 37 100.0 33 ..................................... CAGACTCATTGATTACAGGTGATCGCTTCTTGT 333272 37 62.2 105 ................CG..G.G.GCAACT..CTCC. AGACCTAACCCCCAACCCCTTCCCTACAAGGGAAGGGGAGTAATAATTAAAGCCTCTCTCCTTGCAGGGGAGAGGTTTGGAGAGGGGTTTTAAGAATAAGTCGCA 333414 37 81.1 44 CA.CGCGT............................. TCGCTTATACAACAAAGGGATCTTCTTCAATGTGTGGAACGAAG 333495 37 100.0 34 ..................................... TCGCTTATACTGCGTGGGGAAAAACAAGAAAAGG 333566 37 100.0 36 ..................................... AGGAAACAGCATCAAAAATAAATAATCTAGCCTCAA 333639 37 97.3 31 ..........................T.......... TGAGCTTTTTTATCAAGCTATCTTCACTCAT 333707 37 100.0 34 ..................................... TCGCAGGGCAACCCTCAACAACGGAACCATATCG 333778 37 100.0 36 ..................................... AAGTACAGATTCAAGTTGCATCAGCAGTAGCTGCAA 333851 37 100.0 37 ..................................... GCTAAAATGCTAAAAAAACAGCAATAACGATTGATAG 333925 37 94.6 0 ...................................CA | ========== ====== ====== ====== ===================================== ========================================================================================================= ================== 17 37 96.2 40 GTTTTAACTAACAAAAATCCCTATCAGGGATTGAAAC # Left flank : TTGAAAGCACTACAGGATTTACCTTGCAATTTGCCACCGATTTTAGTTATTGACCAACAACTAAGTCGCTCTCAAGTTACTTCTCGCAGTAAACTGACTCATGCCAAAAAGCAGGAATCTGAATCTATCGCGGGTGTGGCAAAAGCGATCGCTACCCAAATTGTCCCACGTTCCATCTCAATGGAAGACTTATTAACTCAAATTCATCAAACTTTGACTCTCAATGAACGCTAAGGAGTGGCGAGGATTAGCGTCAATCTATAGGTGTTTTTTTCACAGTACCAAATTTTACGGCTAAAATGCTTATACTGTCATGGCTTGAGTCAGTTTAGCTTCAGTATGAGGTTGACGCGATCGCCTGAACCTTTGCTAGAGTATCTTTTTCGGTATTTTTTAAGATGCTACTCTTGACAACCCAATGGCTGAAAAGCTACCTTAGTTTCAGATTGACGCAACCGCACCTTGAAAACTAAATACAGTAAGCCTTCTAGACTCAGGCA # Right flank : AAACTCTTAAAACAACCTGCACCTAAAGCCGCTTTACGTAGGGTTTCAAAAAACAAACCCTGGCTAATTATCTATTTAAAAATAGACGGTAGAATGCTAGGAGCCAACCATAAACCGTAACCAATAAATGCAAATATAACTGTAATGACAGCAGTGACGACATAGCTGAGGCAAATTAGTAAACCATCAGATTCAATTGTGGCGATCGCTAATAATAAAATACCAACAGTAGGTATCGGGTTAGTTAAGGGAATTGGTGAGATAAGTAATATTGTCAACCAAGATATACAAAACCCGTTGATACGCCAAATTAATGGGTTATGAGCTATTTTGCTTAACCGGGGACGGGCGATTTTCTCTACAACCTTGGTGACACGCCGCAGATTTTGGAGGAGAAACTGGGCAAAAGGACGGGGGAATTTATAATGAGCGATTTTTTTAGGTAGCCAAGGCGATCGCCTACCCAAAAGCATCTGTACCGATAATATCAGACAGGCAGC # Questionable array : NO Score: 8.69 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:-0.37, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTAACAAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 53663-52752 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRH010000036.1 Anabaena variabilis FACHB-171 contig36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 53662 37 100.0 37 ..................................... AATTTTCTCTGGTAAAACAAACTTTTCTTTGATGCGA 53588 37 100.0 35 ..................................... TTCGGCGGGCAATCTTAAAATACCCTGACCTGAAA 53516 37 100.0 33 ..................................... GGCAGCACAATACTTATCACGGGCTAAATTCTG 53446 37 100.0 35 ..................................... CTTTGGCTAATGCCTGCCAAGCTAATGGAAGTTAC 53374 37 100.0 35 ..................................... CTATCTTCAGCGTATTGTAAAGCTTGCTTTAATTG 53302 37 100.0 35 ..................................... TCTACACTGACCAATGTTGAAAGTATCAAGACAGG 53230 37 100.0 41 ..................................... AAATGACAACTATTATTCAATAACAACGATGCCAAAGTATG 53152 37 100.0 34 ..................................... AGCTATTGCACATTTACAAAAGCTCGGATATCAA 53081 37 100.0 39 ..................................... TCGAAATCCGGTGAGGATACCTTACTTTTAGCCCGTAAA 53005 37 100.0 33 ..................................... CGGATAATCCCTTACGGATGGATTCACAGATTT 52935 37 100.0 37 ..................................... TGAAACTCAGTTCGTGCCTCATCAAATTTAATCAAAT 52861 37 100.0 36 ..................................... TTGTGCTGTTCCTGCTGAGTAGCTGGAATAAGCAGC 52788 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 100.0 36 GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC # Left flank : AGAAGATAAACGCCGTACTAAAATTCACAAAGTTCTCAAATCTTACGGACAGTGGATGCAGTATTCCGTTTTTGAATGTGACCTGACACCTACTCAGTATGCTAAACTGCGATCGCGTCTAGCCAAACTCATCAAACCAGACCAAGACAGCATCCGTTTTTATCACCTCTGTGCTTGCTGTCAAGGAAAAGTTGAGCGCATTGGCGGCGAAATGCCAATAGACACCACCGTATTTTTTGCTTAACTTGTGCGTCAACCTATAGGTGTTGGGCAAACACACTGAAATTTATCGTCCCAAACCCTTCCCACTCATGCTTTTGAACCCTCCAACACCACAATTGAGGTTGACGCAAACACCCCAAACCCTCACCATAAATACTTTTGCACCAATTTTCTCCAATTCACTCTTGACAACTCAGCTTCCGAAAAGCTACCTTAATCTGAGATTGACGAAACAGAACCTTGAAAACCAAATACAGCAAGCTTTCCACACCTGGGCG # Right flank : ATCAGATGCGGTAAACTTAATTGTCAGATTTTCAGCTTTATACCTTGCTCTCTTCGTTCTCTTTCACATTATCTTGTTTGTCATCATTACCATTGTCTTGCTGTTTCTTCTCTTGCACAACCTGAGTAGCATAAACTTCTACATCTCGCTGAATAATCTCTTCTACTTGATTGGCAAAGTTACTAAATGCTTTATCGTGGGTTTCATAATTCACATAAGGCCCAGTTAATTGAAAGAATTGCCAACCTTGTGTTTTCAAAGATTCGGCCGTGCGGCGATAGTGTCGCCAGCGTTCTCCATAGTGGAAAAATTCTTCAACAGCTGCGCTAATTGCTACAACTTGGCTAAGGGAAAAAGTAGCCCAAACAAAAATTTCCCGCACCTGAGAACTGTTAATATTGAGACTTACCAAAGCGGGTAGAGCTACACCACCAATAATTGTGACCAATCGTAATCTGTAATATCTATTCCGTGATTTACCTGCTTGTCTTTCCATCCAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 148156-145938 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRH010000015.1 Anabaena variabilis FACHB-171 contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 148155 37 100.0 34 ..................................... TCCATGAACCTCTCCCCGCTGACCCGCGCGTCCC 148084 37 100.0 42 ..................................... AAAAAGCATCTAAAAGGCTGAAGGATTTACCAGAAGAGGCGA 148005 37 100.0 48 ..................................... CCACTCTCGTGCTGCATCGGAGCGGAAGCACAGGCCCGTGGGAGCTCG 147920 37 100.0 47 ..................................... GCGCGCTGCCGCGCCGCCGTGCGCGACAGGCCGCGGTGCCGCCGCAG 147836 37 100.0 43 ..................................... CCATTGGCAAAGGCGCGGCACCGGACACCCTGGCGACGGAATG 147756 37 100.0 44 ..................................... TAACGACTGCGATGATCTAGTCGCGGACTAAAAGTTTCCATCAA 147675 37 100.0 41 ..................................... TCGCCGGACAGGATGCGCACCTGCCATCCTCGCGCGCGCAG 147597 37 100.0 46 ..................................... TGGGAAGGATGTATTCCTAGAACTCCAGAAGAGAGAATAGAAGAAA 147514 37 100.0 39 ..................................... CTCCTCGGCCTGGGCGGGCGGCAGGATGCCTTCAAATGG 147438 37 100.0 36 ..................................... GTTGGCGGATCTGATGTTCGATGATCTGGGAATAGA 147365 37 100.0 44 ..................................... GTCTAGCTGAAGAGGTAGCCAAAGGTAATCCTGATGCTATATCT 147284 37 100.0 45 ..................................... GACCTGTATAATTCATATTCATTGTGATATCTTCCACTTTTACAA 147202 37 100.0 44 ..................................... GTGAAGTACCCGGCGAGCTGCGACGAGTGCGGCAGCTGCGCCGA 147121 37 100.0 37 ..................................... TATCAAACTTATATAAACACAGCAAAGCTATCCTATG 147047 37 100.0 45 ..................................... GTAATAGCAACTCGTATGTATCTTGAAGAAACTCACCCTTCTGAG 146965 37 100.0 42 ..................................... GTCCTGGGTGAACTCCAGGCCCAGGCCGAGGTGTTTTTTGGC 146886 37 100.0 47 ..................................... CTCGGAGGTGCAGTATGGCGGGATCAACGATCGCCGCGGCGTGGCTG 146802 37 100.0 41 ..................................... TCCATTCGCCCATACGTCGGTAGCACCAGGCAAACACAGAG 146724 37 100.0 35 ..................................... GTTTGTATGGACGGCCATACAGATCGCCGATGGAA 146652 37 100.0 35 ..................................... TTTATCCTTGCAATCCATACCTCCGTTTGCTGTAG 146580 37 100.0 40 ..................................... ACAAACTAATTTACCAAATTACTCCACAAGAAATTGTGGA 146503 37 100.0 33 ..................................... TGTCCCTATCCAAAATACTCCTTTTTTATAAGG 146433 37 100.0 37 ..................................... CGTAAGGCCAAGCTATGAAGTAGGCAAAGTTAAATTT 146359 37 100.0 42 ..................................... CTCAAGTGCTTTAGATGTTAATTTAGTTAGTCCACTAACGAT 146280 37 100.0 39 ..................................... TTGGCTGAGTCAGATCTAATTGCCAGTCCAATAACTTCA 146204 37 100.0 39 ..................................... ACAACACATTCACGGTGTTTCACAATCGCCACATAGTCA 146128 37 100.0 43 ..................................... ACCTCTTTTACAACATCTGCCCAGGCTTCGCGGAAACTGAAGA 146048 37 100.0 37 ..................................... CGTTCTTTTAAATGACGCAGAGTATTATCTACAATTA 145974 37 91.9 0 .................................GTG. | ========== ====== ====== ====== ===================================== ================================================ ================== 29 37 99.7 41 GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC # Left flank : TAGAGGAGTCTGTTTTGAATTATCAGTTAGAGAAGCGTTGGCTACCCATACTGAAATTAAGTGAGGACAGTCTCAGGGTTTATCCTCTTGATGCTACAGCCAAGCAGCAAACAAGGGTCTATGGTGGTGAGCCTCCTTATGAACCACCAGATTATTTAATTTTGTAACGTCTATACTCTGGTGAAAATGATGTTTTTAAAGGCTGAAACGCAAATTTTTACTAGGGCTTGGCAGTTTGTAACGGATTGTAAATGTCACTGCTAATTCGTCGCAGGGAGATATGACAAGCTAGGAAGAATAAATATGTGTAAATAAAAGTAAAGTTAGTAATTTAACCTTGACTACTGGAGTTTATTCGGTTAAATTGTCTATAAAGCTGAATTTTGGTAAAAAAGCTTTTGATTTATCACTACTGAGTGTATAAACTACAATAGCTTTTGCGTACCTCGGCGCAACTGAACCTTGAAATCTAAATATAGTAATAGTTTCCAAAGGGTAGG # Right flank : GACTCTAGGCATAGCCAAGTCAGTAGGCAAGCCAAGCTTACTTACCCACAAGGGGGCGGAAATTAAAAGATATAGCTGTTACCAGTAGTGTTAGAACATCAATAGATGATACAACCTAGACACAACAAGACTTTTCACCCAGTACCCAGTCCCCAATCCCCAATCCCCAGCTATATGATTGAGCGATCGCCAGAATTTGGATAAAATAATTGACGGGACTATAATTTTGGGCGTTGCATAAATGCGGGATGAATTGAGACTTTTTTGTAAAGCAGAATATTGATTCTACCCTGCGGGAACGCCTTGCGGCGAATGCGTCTTTGCGCCTTTGCAGACATACTTTAAGGAAATCTCCCCGCTAAATTCCACTGCGGGAACGCCTTGCGGCGAATGCGTCTTTGCGCCTACCGCAAGCGGAACGCCTGGCGGCGAATGCGTGAGACAAAAATCATCCCACTAATCAGCAACGCCTAATTTTGAATTACCCAAAGAGTGGGAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTTACCATCACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 743-421 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRH010000078.1 Anabaena variabilis FACHB-171 contig78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 742 38 97.4 34 A..................................... CTGATGAAGAAAAAGTTAGTATCTTTATCCATCG 670 38 100.0 32 ...................................... GAAGCGGTGGGGCGATCGCATCCAAAATTTAA 600 38 100.0 33 ...................................... TTTGAATATTCAGAACTTTATATTGTGCGCGAT 529 38 100.0 35 ...................................... ATTAACAGCTTCTACCAAATCAGCTTGCTCCGTCA 456 36 78.9 0 G.................G.....AC-.T...-....A | ========== ====== ====== ====== ====================================== =================================== ================== 5 38 95.3 34 CGTTGCAACCCTCCTTCCAGTAATGGGAGGGTTGAAAG # Left flank : GCAAAAGAATTAGCCCTCTATGCTTATAGTCTCCGCCTAGCTAGGCGAAGTTGACAAACATCTGAACCTTGAAAATATAATATGTAATAGCGCCGCAGTTCATGCTGCTTGCAGCCTCTGAATTGTGTTAAATGAGGGTTAGTTTGACTGTAGCAATACAGTCTTGCTTTCTGACCCTGGTAGCTGCTCACCCTGATGCTGCTGCCAATAGACAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGCTGTAGTGGCTACCCAATCACCCCCGATCAAGGGGGAACCCTCCCCAATTCTTGATTTGACGCACCAAAGAGAGGTCAAAATTCCGATCTAGGTTCGCGCACATCCTGAAAACCTTATCCTACAAGGAATTTATGAGTAAATTTCTTTTGTAGACAATTCAAAAATTACATCCTGGGAGGCTATTTGATGAGGTTCGCGCAAATCTGCTTCAAAAACCTTGCTAGACAAGCGTTTCATAGAGTGGC # Right flank : ACAAATTGGATATGAAACTGCCTTACGTTGTCTGATGGTGTAATTAATTTCCAAGAAGTAGAGGGTTGAAAGCAAATCCCGTCATCGGCTTGTAACTAAAGTTATTCAGGATAAGCTACTCATAGAAGTGATTAAAAGAGCTTTTTGAATGCAAACGCTTATAATAGGGGCTAAATATATAGAGAAACTCCATATATAAATTGTTGCTTTTCCGAAAAATGACAATAATTTGTCACAAATATATATGGAAGCGAGTTACTAAGTTGGATGACAATAATTTGTCACAACGACATCAATTTGTCACCGACGACAAATAAGAGACCATTTATAAAGTAAATCTTTAGACGACTAGACGACGTAGCATAATACGAGTCATAACGGCATATATGGCAGCCTCACTCATTTCTGGGAGACGCTCATA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTGCAACCCTCCTTCCAGTAATGGGAGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.20,-14.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 37767-38675 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRH010000017.1 Anabaena variabilis FACHB-171 contig17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================================================================================================================================================== ================== 37767 35 100.0 41 ................................... TATATATCATACCAGCCCAACCAGTTGGAATTGCTCCAGCA 37843 35 100.0 39 ................................... TTGAAGCAGTTGCAGCCTTTTTGCGAGCTTCTTCTACTT 37917 35 100.0 41 ................................... AGTATGCTGACCAGCGCTCCACGCTTGGTCGATTTCATCTT 37993 35 100.0 40 ................................... GATCGAGTCAGATCTACCCAGCGGGCGCTGAGCGCTTTCA 38068 35 100.0 39 ................................... CCTAACTGTTCGGTTGCTTTTGTGGCAACCTAAAAAATT 38142 35 100.0 40 ................................... ATAAAAGACATATTATGCCTTGTTTGCCCTATCATAGACA 38217 35 100.0 42 ................................... AAATATATTGAGCAACCTACGTTGCATACAATATAATCCAGA 38294 35 100.0 168 ................................... TTTATAAAACCGCCTCTACCTTGAGCAACATCTTGTTGGCGTTGTATAAATGCGGGATGAATTGAGACTTTTATACAAAGCAGAATATTGATTCTTTGCGCCTACTCTTCGAGTTCCGCTTGCAGTATGCGTGATACAAAAATCATCCCACTAATCAGCAACGCCCTT 38497 35 91.4 38 ........A...........TG............. TTCCATTCCAAACCTTCTGTGCCACACATAGAAAAAAT 38570 35 85.7 38 .......G...........CTG........A.... ACTAAAGGATGCTCAACCACCAAGCCTTGAAAATTAAG 38643 33 91.4 0 ..........A...-..............-..... | ========== ====== ====== ====== =================================== ======================================================================================================================================================================== ================== 11 35 97.1 53 GTTTTTAATCTCTTACCCCTCACGGGGATGGAAAC # Left flank : AACTACGAAATTTTCTAGAGGTTTTGACCCGGTAAGTAGAAATATGCGGCAGTTTTAACAAAAGCTTTGCCTTTTGGAGTTTGCTATGGTACTGTTTTTACAAACATCTGCACCTTGAAAATTAAATAAGTACATATAGCGTTTCTCGTTTGTCTGCAATACGTTTTGACTTCTATCCTACAAGGAGACAGGCTTTAAGGCTTACTCTGGAGGTTAAGTCTGTATTAGACTCAACTGCAAACCGCTATATTCTTAACTTGTAATCGAATGGTTAGTTTCGTCAAGTTATTTTATTAAGAAATGTAACCTGAGGGGGTCGCCTAAAGCCTGAAAAGCTTATTATCTCGTTGACCCCCTCAGATAGCTTACCCTATAAGGGTTTGAGTCACCTTGATGATGTAGTTATTGTCAATAAGCGATCTCTATTGACAGGTAAAATATACCCCCCTCAGTTTTACAGTTCTGTAAGTCTTATTTGGTAAGCTTTCTGTAAGTGTAGG # Right flank : CAGAAAGACGATCGCCTAAACTATCCAAATATGTAGAGAGACACAAATATTTGTAGGATAGGTAGAGCGATCGCCTTTTAACTAAAGCCTATGCAGATATCATCTTCCGGCTATATCCTAGCGTTGGACTTGGGAACAACTGGAAACCGGGCATTTATCTTTAACAATGCAGGTAAAATAGTTGCTCAAGCATATAAGGAACTAACACAACATTACCCCCAACCAGGATGGTTAGAGCATGACGCGGAAGAAATCTGGCAAGATACCTGCTGGGTGATGAAGACAGCCATCGTCAATGCACAAATATCTCCTAGTGAAATTGCGGCTATAGGTTTGACTGTACAACGGGAAACTTGCCTACTCTGGGACAAAACCACGGGGAGACCATTACATAAAGCCATTGTTTGGCAAGACCGCCGCACGGCTCCCCTGTGTCATCAGTTACAGGAAAAAGGCTATGCTCAGGAAATTTACAGTCGTACTGGTTTAGTAGTTGACGC # Questionable array : NO Score: 4.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-1.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAATCTCTTACCCCTCACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 14067-13815 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRH010000018.1 Anabaena variabilis FACHB-171 contig18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 14066 37 100.0 34 ..................................... TTTTTCCTGAGTTACCTGTACCCGCTTGATATAC 13995 37 100.0 34 ..................................... CTTCTAGCCCTTCTGCTAGTGCTATCCAGTTATT 13924 37 100.0 36 ..................................... CTATTAGGAATCCTAGCAGCGCTGCCACCACTTAAA 13851 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 99.3 35 GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC # Left flank : ACTGGCAATTCCACTCACTACGAAGTTTTTTACCGCTATTTAGTCAATGATAATATCGCCATCACTCCTGGCTTTTTTCTCGTCACTGACCCTGGTCATATTTCCAGCAACAATGATATTTTCATCGGTGCTATCCGTACCACCTTTAGTTTTTAAAATATTGCGTCAGCAAGAGGAAAAGGGGCAGGGGGCAGGGAGCAAGGGGGAAATCCGTGACGGAAGCTTGTACAAGCCTCGCCCTGCCTCTTCCGGTCAACCCATAGATGTTTTTCGGCACAGATTCAGTTTCTTGCCTCTATGCCTTACCCTGATTAGGTTACAGCCCATAACATTAAAACTGTGGTTGACGCAATTACCTCTAACCTTTGCTGTAACAGCTTTTGAGTTAATTTTTGCCATGCGCCTCTTGACAATCCCATGTCTGAAAAGTTATCTTTGCTCCATAATTCACGCAACTGAACCTTGAAAACCAAATACAGCAAGGCTTTGAGAGCCGAGCG # Right flank : GACTCTGGTGCGTAAGTACTCTAAACTACAACCCTAATTTTGCGGAAAACCCAACGTGCTAGGCAAAGCAATACCTAAAGGCGATCGCCCAAAATATCTACTCATCCTTTTTGTGTAGAAAATTAAACCACCTACTTCTAGGCAACTAATCAAAGCGCGAGTATAAAAGAAAAAACAAACACAAATTAATACCTTAAATTAACAGAGAAATAACATGGCAAATCGCTCGCGCAAGCTAACGCCAAAATCTTCTAAGCAAAACGGCTCTGATTTGGAAGGGAAGAAACCTCAAATCCAGCAACAACAGGTAGGTAATACCGATTTGCCAAAAGAAGGTGAGGGAAAAATTAATCAAACCCAGATACAGAAAGCGATTTCTCCATCAAAATCCTATAAACCATCCTCAATAATTGCGATCGCAATTTTACTCATTAGTGCTGGTTTAGTGCTGAGTTCTACCTGGATTGGGATTCTGTTGATATTTCACCCTGAACAGGTAA # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 21055-21821 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRH010000018.1 Anabaena variabilis FACHB-171 contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 21055 36 100.0 33 .................................... TTGTCATCTAGAAATGCAGCTTTGTATGCAAGA 21124 36 100.0 45 .................................... TTATATTGGTAGAGGCTTTTTTAGCTTCGTTTATATCAATGTGCA 21205 36 100.0 37 .................................... GCAGGTATTGCTGCTTGCACAACGCTTGCAGTAGTTA 21278 36 100.0 37 .................................... GTTTTTAATCTCCGAAGGACTAATGCTTGGAGCAGGA 21351 36 100.0 39 .................................... CGTTCCATCTGCTGTTCGTGCAAAAAGCGATGGTCGCTT 21426 36 100.0 35 .................................... TCGACGTCCTATTTTCGAGATTCCTCGATAATCAT 21497 36 100.0 32 .................................... AACAGTCACAAATCCTAGAGTGGCTAAGGGAG 21565 36 100.0 37 .................................... ATCTTGTAATTTCAGGATATAATGCAAAGATGATTGA 21638 36 100.0 36 .................................... ATCCGACATCGCTATAGAAATTGTTTCCAGTCTCTC 21710 36 100.0 40 .................................... CCGATAGCGAATGCCGTTTATCTCCAGGCAAAAGATAAAG 21786 36 86.1 0 ....T.....G.C.................AT.... | ========== ====== ====== ====== ==================================== ============================================= ================== 11 36 98.7 37 CTTTCCGATCACATCACCCCGAAAGGGGATGGAAAC # Left flank : AAGACAGGCTTTAGTTGATTGGGCGCAGAAAAAAGGAGTGCAAGGAGTTAATGACTATCGAAAGCAAAAAAATGTTGTGAGTATTGATGGTTTACCGACTCCACTCAGCAAATTATTTTAAATGGGTTTTAGTGGGGGATTGGTAATTGGTAATCGTAAAAAGCAGTTACCTTTTACCAACCATCTTGTAGCCAGACTTGATATTCATTGAAATGGGCGTGCAATTGCTCAAAATCCACTGTTTTTGTAACGATTATGTAACAAATTTGACAAAAATGACTAATAAATTTTATTTTAAACACTAGCGTATGTCGTTCATCGACACCACTCGCCCGAACCTTGAAAACCTCATAACTTCGTTGACTGGTGTCGATTGCTTACACAGTAAGGATTTCCGGCTGCAAAATTCCCCACTTCTGAAATTTATTTGATTAAATAAAAAAGTGGTGTCGAATTTGGGGTCTGAAACCCTCTCTATACAAGCGTTGTAGAAGTGAACT # Right flank : CTAGCGATCGCACTTTGCGATCGCATTGTTAAATACGGCGGAAATATTATTTACCTATCAATTAGCCTGAGAAAATATCAGCAAAGATGTAATTGCTTTTGCTACAAAGATGATATTTGTCATAAATAAGTAATTGCCGAAAACAGAAAGCATTTACAACAAATGAGAAAGCAATATCTCTAATTGCTTGCGGAAAACACTGAAATGAATACGCGATCTACTGAAATGAGAAAGCATTTACAGCAAATGAATAAGCAATATGTCTAATTGCTTGCGGAAAACACTGAAATGAGAAAGCATTTAAGGCAAATGAGTAAGCATTTAAGCATTTTGCTTTCTCAAACAGGCAAATTATATAGCTGTTGACGGTTGACAGTTGACAGTTGACGGTGAGGCAGTCGCAGTTAGTTAGTAGGTTGGGTGGAACGAAGTGTAACCCAACAAATAATATTGATAAATTAGCAGATTAAACTACAAAAATACCTCAATTTAATAAATCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGATCACATCACCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //