Array 1 390575-390842 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082272.1 Pasteurella multocida strain 17BRD-035 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 390575 28 100.0 32 ............................ GAAGCGGTATCAATTCTGAAAAGAAAAGGGAT 390635 28 100.0 32 ............................ TCTGGAATTTCTGCTTGCACCGCCACATCTAA 390695 28 100.0 32 ............................ TAATGAAATCAGCGTTATTGGGGAAAGCGTTC 390755 28 100.0 32 ............................ ATTTATCAACGTTGAATTCACCTAAACGCCAG 390815 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 99.3 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACAGCAACAATTGTTACAATACGGTTTGCAAGATTACGCTTTAATTAGCGATGTAAGCCAAACTCCGTTTCATACAGAGCATCGCTGTTATAGCCGAGTACATCGTAAAGGGCAAAGTGCCATCCGTCGTACTGAAAAGCGTCTTAAAAGTCAGGGAAGATGGGATGAGGCGATCCGCGCTGAAATGCAACAACGTCAACAAGACACCGCGTTTTTTCCCCATTTTCATTTAAAAAGTGCCAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAAAAGAATGCCGCAATCTTGTGTTGGTATCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAGGTTTCCGAATAAAATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATTGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAACAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1840777-1838950 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP082272.1 Pasteurella multocida strain 17BRD-035 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1840776 28 100.0 32 ............................ TGATTTATATATTGCCAACGGAAATAGCAACA 1840716 28 100.0 32 ............................ TGTGCCTTGACCTTTACCCACTTTCACTTTGT 1840656 28 100.0 32 ............................ AGTAACATAAATTCTCCCTCTGTAAATAACGT 1840596 28 100.0 32 ............................ CTTTGTTAGTTTTCTAGTGAGCCAATCACTAA 1840536 28 100.0 32 ............................ TTGAGAATGTGAGTTAAACACTTCTACATTTT 1840476 28 100.0 32 ............................ CAAAGCGCGTGTTATTTATAATGACTTCGATG 1840416 28 100.0 32 ............................ AGCAATCACCAAAAAACACGCATTGCGGAATA 1840356 28 100.0 32 ............................ GTTCTTGAGTGTCTAAGCCGTCTGTTCTGACG 1840296 28 100.0 32 ............................ GGAAGAAATCAAAAAAGGCGATCGCATTGCAC 1840236 28 100.0 32 ............................ TGACACAAACTCATCACCGCTATAAAGCATGA 1840176 28 100.0 32 ............................ TCGTAGTTTATGCAACAAAACGCAAGTTGCTT 1840116 28 100.0 32 ............................ TCGAACTTATGCAAGAGTTAGTTTTGCATGGA 1840056 28 100.0 32 ............................ TCTTTAAAAGAATACGGCTTTACTTATGATAG 1839996 28 100.0 32 ............................ GTTATGGAACGGTTGAATCCCGAGAACGATTT 1839936 28 100.0 32 ............................ GCACCATGACGGCACGCCACACTGGCACTTGT 1839876 28 100.0 32 ............................ AAAGGAGAAATATATGTCTGATTTAGCAACAC 1839816 28 100.0 32 ............................ GCATTTTGTGCGTGCCAAAATTTGACACAAAA 1839756 28 100.0 32 ............................ GTTAGAACAGCTAGGCTTTAATCAGTACATTT 1839696 28 100.0 33 ............................ CATCGGTGTTCGTTATGTTGTTGGTTTCTTAAA 1839635 28 100.0 32 ............................ TAAGCTTAGAAAACCGCTTTATGGGTCAAGCG 1839575 28 100.0 32 ............................ ACTTGATTGCCTTGTTTCTCAAGTTCAGCCAC 1839515 28 100.0 31 ............................ TTTTGTCGCAAACCATTTCGCACACGCTTGC 1839456 28 100.0 32 ............................ TTTGGGGAATCCGTCAATTCCAATTCTACGGC 1839396 28 100.0 32 ............................ AAGCCAGATCTAAACAGCCACCAAACAGCCAC 1839336 28 100.0 32 ............................ GCTTGATACGCTGAAATCTAGCTACATTTCAA 1839276 28 100.0 32 ............................ GATCGCGCGGTTCATTTCAATTGCGGGGGCAA 1839216 28 100.0 32 ............................ AGATTCATGCGCACCGTTTAAAGCGTATGCCG 1839156 28 100.0 32 ............................ TTTTTAGTTTGAACTTAAGGGCTTATCCCGTT 1839096 28 96.4 32 ............G............... CCACGCCTTTTGAATCGCGGATTCTTTCCGCG 1839036 28 96.4 32 ............G............... TTTTGAAATTCAGCAAGCAACTTGTTATAACG 1838976 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.3 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTGCTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAATTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAACAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACGTCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATTGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGAATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //