Array 1 967152-969131 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019177.1 Salmonella enterica subsp. enterica serovar Albany str. ATCC 51960 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 967152 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 967213 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 967274 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 967335 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 967396 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 967457 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 967518 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 967579 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 967640 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 967701 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 967762 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 967823 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 967884 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 967945 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 968006 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 968067 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 968128 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 968189 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 968250 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 968311 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 968372 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 968433 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 968494 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 968555 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 968616 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 968677 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 968738 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 968799 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 968860 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 968921 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 968982 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 969043 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 969104 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 985689-988465 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019177.1 Salmonella enterica subsp. enterica serovar Albany str. ATCC 51960 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 985689 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 985750 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 985811 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 985872 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 985933 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 985994 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 986055 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 986116 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 986177 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 986238 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 986299 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 986360 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 986421 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 986482 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 986543 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 986604 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 986665 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 986726 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 986787 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 986848 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 986909 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 986970 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 987031 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 987092 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 987153 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 987214 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 987275 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 987336 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 987397 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 987458 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 987519 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 987580 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 987641 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 987703 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 987764 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 987825 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 987886 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 987947 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 988008 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 988070 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 988131 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 988192 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 988253 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 988314 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 988375 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 988436 29 100.0 0 ............................. | A [988463] ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //