Array 1 4211575-4211094 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913027.1 Salinispora pacifica DSM 45546 = CNT-133 strain DSM 45546 Salpac5DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 4211574 36 100.0 38 .................................... AGGTCGTCATCACCGATCGCATCCAGGAACGCGCCGGC 4211500 36 100.0 36 .................................... GGTGTTCACGTCGGGGTACCTCCCGGCCAGACCCCG 4211428 36 97.2 37 .................................A.. TCGTCGATGAGTCGCACGAACACGGCTAGGTCTTTGC 4211355 36 94.4 39 .............G.A.................... TCGAGCACCCATCGCGCGGCGACGGATCGTGCGGCAGCG 4211280 36 100.0 39 .................................... ACCCACGAGCACCAGGCGTCCGCGCATGACGTGCTGCTG 4211205 36 94.4 40 .............G....................A. GCCGGATGCGCACACGACGCCCACCAGGGACGTGGGCGCG 4211129 36 91.7 0 .T..T........G...................... | ========== ====== ====== ====== ==================================== ======================================== ================== 7 36 96.8 38 GCCGCAGCTCCCAACGGAGCTGCCCTTCATTGAGGC # Left flank : CATCAAAACCCGATGAACCTTGACGACGTGCGACGCTACCTCATCGCGTACGACATATCCGACGACATCCGCCGAACGAAGGTCACCAAGAAACTCGAATCATACGGCGACCGCATACAGCACAGCGTGTTCATCGTGGACACCCGGCCAGCCAAGTTCCTACGGCTCCGCACCCAACTCACCGAAATGATCGACGAGGAAAGAGACTCCGTCATCTTCTGCAACCTGGGTACCCTTCGCGAGAACAACCGTCGATCGCTCGACGTGATCGGCTGCAGCCGCACCATCACCAACCACGGACCAGCGATCCTCTGAACCACCGGCGAAGCCTGCGTCGTCTCGCCGCCAAGCGCGGACCCGTCGCCAGGGTGTCAGCCCAGCTCACATGCCGGGTAGGTCTGCGGGTACGCGGCCTTGAGCGCTACTCCGCCTCGCAGGAAGCGCACCCTTCGCAGCAGACCGGTTCAGGTGCAGGTCAGAGCGGCTATAATTCTGACCCA # Right flank : TTCAAACGTCCACACCTTGCTCTTGGTGCCATACGAGTGTGTTCCCTTCTACGGCCCGCCCCTGCGTCCGCGCTGCTGGTGATACGAGGGCTAGCGAATCCGGCCATGATCAGGGGATCATCCACAAGCATCGGAGATATCCGACAGCGCAGGACCGGCGCTGGCGAGCGGTCGGGCCTGCGGCGAACCTGAACAGGTCGACGAGGTCACCGCTCGGCTGCTGGCCACGGCCACGCGCAGGTGGAGCAGCCTTGGCCGCAGGCCACCGACAAGCTGGTCCCCGCAGCGATACGCCAGTTGCGGGGACCAGCCCGTGCAAGGATAAGCCCGGTCAGGCGCCGCACCGTCGACCTCGCGGGGTATTAGTGGTAGCGAGGGCATCCCGGTGTCACTTCAGTGACCGATCCCCCACCAGTCGTGCAAGGAGAAGCGTTGTTTCTCTTGGTGGAGGCGGATCACCTCGGCGGTGTAGGGCATGGTCGGGTCGGGTAGCTCGTCTG # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAGCTCCCAACGGAGCTGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 4267483-4264710 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913027.1 Salinispora pacifica DSM 45546 = CNT-133 strain DSM 45546 Salpac5DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4267482 30 96.7 32 .............................G CACCGACTTGCACGCGGCTCGACCCCCGCTCC 4267420 30 100.0 31 .............................. AGTACAACATCCCGCAGTTAGTCGCACAGGT 4267359 30 100.0 31 .............................. TGGACGGTGACCTCCGACACGCGCGGCTCGT 4267298 30 96.7 31 .............................T TGGACATCGCCTCTTTTTGTGATGTGTCGAG 4267237 30 96.7 31 .............................A CCATCTTGGCCCGGGGCATCGTCGTGCGAGG 4267176 30 96.7 31 .............................T ACTCGCCGAGGAGCGCGGCCCGTTCGACAGT 4267115 30 100.0 31 .............................. GGTTTTCAAGCACGGCATCCTGTCGAGGTAC 4267054 30 96.7 31 .............................G CTTGGGTCCGAGCCATCCAGGCAGCATCACC 4266993 30 96.7 31 .............................G CCGTAGCCGGCGGCAGAGACCAGCACGACCA 4266932 30 96.7 31 .............................T AGCTGGTGTGGGGTGGTGGCGGCGTAGTGCA 4266871 30 93.3 31 ............................TT GTAGTCATTTCCGGCCGTTAACCCTGTCACC 4266810 30 96.7 31 .............................T CCGATCAGCCAACGTTGGGCCAACCAACGTT 4266749 28 90.0 31 .................--..........A TCACGACCGGCCTACTGTCGATCAAGGACCC 4266690 30 100.0 31 .............................. CTTCCGAGTACGCGCCGGAACCCAGGACCAG 4266629 30 100.0 31 .............................. AGATCGACTACGTGGTCGACTCCAACGCATT 4266568 30 93.3 31 ............................AT CGTGTCCTGGTCGTGGGCGTACTCGGCGGTG 4266507 30 96.7 31 .......................A...... TGATCCGTACAGCCCGGGGCCGGTGGGTCCT 4266446 30 96.7 31 .............................T AGGTCGTAGCCGATCGTGCACGCTTCCTTCG 4266385 30 93.3 31 A............................G TGTGCACCCGGCCGGGGTAGAGCAGGCACCC 4266324 30 96.7 31 .............................T TGTAGAAGGCCCGTTCGGCGAGCGCGCGTTG 4266263 30 100.0 31 .............................. CAAGAGTGACCCGTGGGCACCGCCCAGTCGC 4266202 29 96.7 31 .................-............ AGTACGACGATCTGCGTCGGGCGGTCGCGGT 4266142 30 100.0 31 .............................. ATCCGAGGCCCTGGCGGTGGCGTTACGGGCG 4266081 30 96.7 31 .............................T AGACGACGGCCTGCGGGGTATCGGGGTCGGG 4266020 30 100.0 31 .............................. CTCCGACGGCATGCAGTGGCCGCCGCTGATC 4265959 30 96.7 31 .............................A CGCGGGTGGCGCCAGGCGGTCCGATGGCGAC 4265898 30 100.0 31 .............................. CAATGGGGTTCGCGGTCATCGCCGCGTTGAG 4265837 30 96.7 31 ............................C. CAAGTCCACCGCCCCGCATCAGTCGGCCGCT 4265776 29 93.3 31 .................-...........T TGATGGATGTCCCGGATCCGGTCGCGTTGGT 4265716 30 100.0 31 .............................. TGGGTAACACCGTCGGGGAACGCGGCGGGCT 4265655 30 100.0 31 .............................. AGAGGGTGTGTCGAGCCGTCCCGCTCGGTCG 4265594 30 100.0 31 .............................. CTGTCGGTCATGTGGATGTCGTCGCTGACGC 4265533 30 100.0 31 .............................. CGGCGCGTGTCACCGCGGCCTGGTTTGACAG 4265472 30 100.0 31 .............................. GCTGCATGACTCCCAAACGCTCAGCACACCC 4265411 30 96.7 31 .............................A CTGATTCGAGTGTGCGCGCGTATCAGAAGAG 4265350 30 96.7 31 ............................A. GGTGCACGAGTGGTCGGGCCCGGATGCTGCG 4265289 30 100.0 31 .............................. GTTCTTCGGGTGCATGTACTACGCCGCGCTG 4265228 30 96.7 31 .............................A TGCCGCCTTCTGGGGAGAGGACGGCGAGGCG 4265167 30 96.7 31 .............................T CGTCCGCCTCGGGCTGTGTGGTGGTGGTCAT 4265106 30 100.0 31 .............................. ATGATCTCCGCCGGTACCTGCGTGGGGATCG 4265045 30 100.0 31 .............................. CGGACGATGGCGCGGCAACCACGTCCTGCGC 4264984 30 100.0 31 .............................. GTTCTTCGGGTGCATGTACTACGCCGCGCTG 4264923 30 96.7 31 .............................T ACGACGACCGGTACAACGACGGCGGGGACCG 4264862 30 96.7 31 ..........T................... CTGAGCTGAGCCTCAACGTCGCGCTCAACCC 4264801 30 96.7 31 .............................G CATTAGTAATGTTTTGGATCTTGTTTGAGTT GT [4264782] 4264738 29 90.0 0 .........G...........-.......T | ========== ====== ====== ====== ============================== ================================ ================== 46 30 97.4 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Left flank : AAAGGAGCAAGAAGACCCGGCAAAGCCAGCTGACCAGCGGTGTCATGCCTCAGCGAGCCATCGCCTACAACATCCTCATATGAACCAGCACTCCGCAGCGCATCGAACGCGCTCCCGTCCTTCTTCTGAAACCCCGGGGTTGCCTTGCCGACATCGTGTAACCCCGCCCAAAACATGATCAACGATTTAGCGTGGCTGTCGTCGGTGGCCAGCCCCTCCGCGATGACCCTCCGTTGGTTCGGGGCCAAATAGCGATCCCACAACGCACCAGCAACGGCCGCGGTATCAATCAAATGCCAGAGCAATGGATACGGTCTCGGGAGATGGTTAGACTTGCCCCAGATCCCAGCATCGACCCCGTCATGGTCGACCCCCAATTCGACCCCCTCCATTCGTACCCGCTCGGCAAGGGCATCAGCATGCAACCACAGCCGTACGACACCACGACTCGACCGACGCAAAACCGCGCCCACGGCTGATAGAAGCGCAGGTCACGAAGT # Right flank : CCTCGACGCTGTCCGCGCCGGTTACACCAGCGTCGGCCTGGCCGTTTCTGAAAGTCCTGGCCATACAGTAAGCGGCGTTGTGATTGGCAGGTTGTCGTGCTGGGAGGGGTGTGGGCGCGGTGAGGACAGTTCAGGTTCGTACGTATCTGGTGCGGGTGGGTCGGTTGGATGAGTGGGTTGATGCGTGGCGGAGGTTGATTGTTCCGTTGCGGCGGGAGTTCGGTTTTGAGGTGCACGGTTCGTGGGTGGACCGGGACGCGAACGCCCATATTTGGGTGCTTTCCTACGAGGGGGGTCGGTCGTTCGCGGAGGCTAACGCGGACTATTGGGCGTCGCCGCAGCGGGAGCGGTTGGGGGTGAATCCGGCGGAGTTCCTGGTGGGTGAGCAGGTCCGTGAGGTAGAGCAGGTCTTGTAGCTACTCTGCTGCCGGTAGGCGGTGGGCGGCGCGTTCGTCGGGAGTGAGGGTCCGGACGACTCGGTGGCGTGCCGCGTGCAGGAG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4276462-4278384 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913027.1 Salinispora pacifica DSM 45546 = CNT-133 strain DSM 45546 Salpac5DRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4276462 30 100.0 31 .............................. TGATCCTCGGCGGCCTCGCCGACGCCAAGGA 4276523 30 96.7 31 .............................G CGAGCGCCAGAGTACCGGCTGCTGCATGCCG 4276584 30 100.0 31 .............................. TACTGCTACTTGTCTTGGCCAACCGTACGGA 4276645 30 100.0 31 .............................. CGGCCTCGCCGGCGCGCTGGAGGACTGCGAC 4276706 30 93.3 31 ............................CT CGACACATCACAAAAAGAGGCGATGTCCAAC 4276767 30 96.7 31 .............................A CGCCGCGTGGGCAGCACGGGGCAAACAGTCC 4276828 30 96.7 31 .............................G TCATCAGGACCACGGGTGACGGGGCGACCGT 4276889 30 100.0 31 .............................. ATCGACCGGGCCTGACAGCCCACAAGTCCAC 4276950 30 96.7 31 .............................G AAACCCACAGTTGGGCGGCCCGTAGGAACGG 4277011 30 96.7 31 ....C......................... CCCGCTACCCGCAGCCCGACGACCCGCGCGT 4277072 30 100.0 31 .............................. TCGATGCCAACGCACCGAAGGCGTTGCGGGT 4277133 30 96.7 31 .............................T CGGGCGCGGTGTGCCGAGTGTGGGTGCCCAA 4277194 30 96.7 31 .............................G TGTGTGCCTTCGCGGCACCCGTAGCCGCGGT 4277255 30 96.7 31 .............................T GCTGGTCCAGCCAGGTCGACGCGCCGCGCTC 4277316 30 96.7 31 .............................A TCCGGGGGATGACGCTCGTCGGCGCGTATGT 4277377 30 93.3 31 .C...........................G GCTCGACACCCGCACCAACCAACCATCAGAA 4277438 30 96.7 31 .............................G GGAACGCGGCGGCGAGGGCGTCGGTGTCGAA 4277499 30 100.0 32 .............................. CGGCTTCGTGCCGCTCGGAAGCTGGCTTCGCG 4277561 30 86.7 31 TC..C........................G CCATCGGCTACGCCTCCACCGTCGTCTCCTC 4277622 30 96.7 31 .............................G ACCCGAAGGCCATCAGCTTCCCGGTGGATAT 4277683 30 100.0 31 .............................. GGTGGGAGTTTGAGCGGGCCGTGCTGGCGTC 4277744 30 100.0 31 .............................. CGAACGCGCCGGACCCGGCCACAGCCGCCAC 4277805 30 96.7 31 .............................A CGGCATTAAGGCCGTCCTCCTGGAGCTGCTC 4277866 30 96.7 31 .............................T CCGGCGGGGCGCTGGCGGGCACCGGTGCCGC 4277927 30 93.3 31 ......A......................G CCGCTCAAAGACCACCGCCGCCTTACTCGCC 4277988 30 96.7 32 .............................G CACCTCCCGGAACTAGCCGGGGCTCACCATCC 4278050 30 96.7 31 .............................A TTTCCGAGCGCGGAGCGTCCAGGCCGAATGT 4278111 29 93.3 32 .....................-.......G AGTGGCCGTACGCCAGGGCGGCGCGGTGGACA 4278172 29 96.7 31 ......................-....... GTCGCCCGGCTCGGGTTCGCCGAGAGCGTCC 4278232 30 86.7 31 ..........T.............T.T..G GCGTATGCGGGGCCTACGCAACGGCGGTGCA 4278293 29 93.3 31 .....................-..T..... CGAGCGGGACCAGGCCCTCACCGCTGCCCAC 4278353 30 96.7 0 ........................T..... | CC [4278363] ========== ====== ====== ====== ============================== ================================ ================== 32 30 96.4 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Left flank : CACCGACATTCAGCGCCTACTCGACCCCGACAGCACACCCAAACAGCGGCAACCTGCGGCCGATATCACCTCCCTCTGGGATCCGGAGATGGGAGCGATGCCGTCCGGAGTCAACTACAGCTCAGACCCCTGGGACTAGCATGGCTTCCCTTGTCGTCCTGGCAACAACGGCCGTACCCGATCGTCTACGCGGTGCACTCAGCCGCTGGATGATCGAAGTGACACCCGGCATGTTCGTCGGAACCCTCTCAGCCAAAGTCCGCGACGAGCTATGGAACGCAGCAAGCAGCGTCGTCGGCGACGGCGCCGCCGTCCTCATCCACCCAGACGACACCGAACAAGGCTTCTCCCTACGGACCGCAGGAGAACGCAGACGCCGCCCGGTCGACTTCGACGGCCTTACCCTGGTCGCGATGAGCCCCCAAGAGCACCAAGGCAACCCTCCCACCCCGGACGAGAGAATCTGGCCGGACGGCTGGTAAAACCGCAGGTCAGGAAGT # Right flank : CGTTCACGGTGAAGGCCGCAGACTTGATGGCCGTCCTCCCCACACAGGGTTTCTGGAGGCGACACATGATCGAGCCTGTGCAGATCTGCTGGGCGCCGGCGGGTGAGAGCATGCCGTCGCTGGGCTCCCACGCCCTGGCCGCCGCGCCGATGGCTCTGCGGACTTCTGCACCCGCGGTCCAGCCACCGCCGGATCGGACTCGCCTGAATCGCTCACCTTATCGGTGGCAGGTCCGCGGTGGTGCTTGGTCCTGCCACCGATCAGCGAACGGCCACAGTCGAGTCGAAGCGGTCCGCCACGTAGTTCAGCATGCTGGTCAGCTCCTGTGCGCCGACCGCATGCCCGGCCGGACGTGGCCCGTCGATCGGTAGGGAGCCGACATGGGCCCACTCCAGCCGTCCGTCGGGGCCGACCCGGCTCCTGGTCCGGCCCTGAGTGTCCGGGTGCAGGCAGTACGGAATGTCCAACAGGCCGCGCCGGAAGGCGATGTGCAGGGCGAT # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //