Array 1 110234-108158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHEC010000002.1 Methanococcus maripaludis strain C11 Ga0416747_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 110233 37 100.0 36 ..................................... AATCCTCGGCCCTCCCTTATTAGTAAATCCAGGGGG 110160 37 100.0 34 ..................................... CTGGAGGGGGGCATTCTGGAGGGAATCATTCTGA 110089 37 100.0 36 ..................................... CTTTAAAGAAATAGAAGAACCTGACACCAGTTACAA 110016 37 100.0 35 ..................................... ATGCACCAGATATTTTTGAATAATTTTTATTAAAG 109944 37 100.0 35 ..................................... AGACCCGATCGAGGGTCTTTGCAATGATCTCACGG 109872 37 100.0 38 ..................................... CCGCCCCAATTGCGATACGTTGGCACGGGCACCATTTA 109797 37 100.0 36 ..................................... TAAAATTGATTGCACGTTACAGCCAAATAAAAACAG 109724 37 100.0 35 ..................................... ACGCAATAAGCGACAAAAACAAGGAATCTTTTAAA 109652 37 100.0 33 ..................................... ATAAGGCACAGGTATATCTTTGCCTTAACTTCG 109582 37 100.0 36 ..................................... ACGTGCTTATCCTCATAGCCCCCTAATAATCCCTCG 109509 37 100.0 35 ..................................... TAATTTCTATTATATATAGTTATAGGTTAGGTTAT 109437 37 100.0 35 ..................................... TCCATATCGTTCCAATTTCAGAAACGGTGGTAGAT 109365 37 100.0 35 ..................................... TGGATATATAAGTATCCTCCGGCCGTATAATACGG 109293 37 100.0 37 ..................................... ATATTGGATTTTCTGCTTCTGTTTCATTAACTAAAAT 109219 37 100.0 37 ..................................... GTTCCACGTCTGCACTTACTTCGCTATCGCTTGAAAT 109145 37 100.0 35 ..................................... TGGATATATAAGTATCCTCCGGCCGTATAATACGG 109073 37 100.0 37 ..................................... ATATTGGATTTTCTGCTTCTGTTTCATTAACTAAAAT 108999 37 100.0 36 ..................................... TACACATTCACTCACCTTAGTGGTTGGTTGTTAATG 108926 37 100.0 35 ..................................... TATGGATCATTCAGAAATCGTAAAAGAATATTTCA 108854 37 100.0 41 ..................................... TGATTGTCAAAAGAATGTATTATATTTTTATGATCCATCGA 108776 37 100.0 37 ..................................... TCATTAGGGTATTGTATGAACTCTTTAGCACTTACAG 108702 37 100.0 38 ..................................... TAATCGATCCTGTGAACGTTCCTAACGTCTGTAAACTT 108627 37 100.0 37 ..................................... AATTATCAGAAAACAGTAAAAGTGTTACAGTCCTAAA 108553 37 100.0 35 ..................................... ATTGCAATCGTTTCGTCCTGTTCGTCCTTGTACCA 108481 37 100.0 35 ..................................... AAGGGTGATTACGTGGCTACTGATGAAATGAACGA 108409 37 100.0 35 ..................................... ATTGCAGATCATTATATTATCAATCCTCGAATAAT 108337 37 100.0 35 ..................................... TTTAGATGGAGATAACGCAGAAAAATTAAAAAATA 108265 37 100.0 34 ..................................... AATATGCCGATTAATCGACCTGTGTATCTATCAG 108194 37 86.5 0 ...........................A...C.T.GT | ========== ====== ====== ====== ===================================== ========================================= ================== 29 37 99.5 36 CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC # Left flank : TAAAACTACTTCGTTATTCTAGAGTTTTTATCACATTATCTCTAAAAGAATAACTTGCAAAATAACAAGCATTGAAACATTTCATTATTGCCCTAATTTCCCAAAGAGTTATACTAAAAGAATAACTTGCAAAATAACAAGCATTGAAACTTCGACCAATTAACCCTTGAATTATTAGGTGTGAACTAAAAGAATAACTTGCAAAATAACAAGCATTGAAACTTTTTAGAAGATTGGTGATAGAATGAACGAACAACCTAAAAGAATAACTTGCAAAATAACAAGCATTGAAACTTTTTAGAAGATTGGTGATAGAATGAACGAACAACCTAAAAGAATAACTTGCAAAATAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGCATTGAAACTTACGGCTGATAACGGCATAGTGTACTCTTCGCC # Right flank : ATAATAAAATCTAGCTGTTAAGTGGTCAGTGTCTACGGGTAATCGAATCAAACCCTATTTTATATCCTATCCGACCAACGACCACATGAATCCCTAAGAATTTCATCGCTTAGGATATTTTCGAGTGAAGTGTCCCGAAAGGGCGAAAATTCCATATGCGGTGAAATTCGACCTCTTTTGGTGTTTAGGATATAATATCCTAAAAAATAATTCATACCGCCCTAGGCACAAAATGTGCGAAAGCACCACTTTAGCCGTAGCACGGCACCACTGGTGTCGGGCGTGTATATTTTTAAAAATTTAGAAAATTAAACCCGCGCGTTAGCGCTATTAATTATACAGAAAAGTTGTAGCAAGAAAAATGCAACGAAATTAAACCCTGCCGTTTTAATTCTTTAATTATTTAAAAAAAGCCAGATTATAGATATTTTTTAAACGATTTCTTAAAAGTTTTAAAATTTTAATTTAACGACCCACATCGAGTTTGGTGTCAAAAGAAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: R [matched CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 110693-110368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHEC010000002.1 Methanococcus maripaludis strain C11 Ga0416747_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 110692 37 100.0 35 ..................................... ATTTCATTATTGCCCTAATTTCCCAAAGAGTTATA 110620 37 100.0 35 ..................................... TTCGACCAATTAACCCTTGAATTATTAGGTGTGAA 110548 37 100.0 35 ..................................... TTTTTAGAAGATTGGTGATAGAATGAACGAACAAC 110476 37 100.0 35 ..................................... TTTTTAGAAGATTGGTGATAGAATGAACGAACAAC 110404 37 67.6 0 .........................NNNNNNNNNNNN | ========== ====== ====== ====== ===================================== =================================== ================== 5 37 93.5 35 CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC # Left flank : GAAATAGATCTAACTGAAAAAGATATCCATAAATTAAGTAAATATTTGGAAGAATTCAGGAAAATATTAACTGGATATTATCCAAAAGCAACGTCATATAAACAAAGATGTACAGACTGCTGTTATAGAAATATTTGCGTAAAATAATTTGTTCCTTAAAAATTATCGGGCGTTTTCCAAACGTATTTTAGTTATTTGAAAAATCAAAATAAGATTTAAAACGATATATTTTAAAAATATCTGTAGATTTTAAATATTTTTAATCATAGAAAATAAAAATAATAGTAATACTCGGCATAAAATAAAATAATCTGTAAATTTTAATTTAACCAATATTCTAATTTAAATAACGTTTAAAAAGTAATTATATTATATGAATAATCCAATGAACTAATTTAAACGGATATTTATTTTTTGTTGATAAAATGAATAAGCAAAGTACATATAATGGCAGAATCATAAAACTACTTCGTTATTCTAGAGTTTTTATCACATTATCT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAAGCATTGAAACTTACGGCTGATAACGGCATAGTGTACTCTTCGCCCTAAAAGAATAACTTGCAAAATAACAAGCATTGAAACAATCCTCGGCCCTCCCTTATTAGTAAATCCAGGGGGCTAAAAGAATAACTTGCAAAATAACAAGCATTGAAACCTGGAGGGGGGCATTCTGGAGGGAATCATTCTGACTAAAAGAATAACTTGCAAAATAACAAGCATTGAAACCTTTAAAGAAATAGAAGAACCTGACACCAGTTACAACTAAAAGAATAACTTGCAAAATAACAAGCATTGAAACATGCACCAGATATTTTTGAATAATTTTTATTAAAGCTAAAAGAATAACTTGCAAAATAACAAGCATTGAAACAGACCCGATCGAGGGTCTTTGCAATGATCTCACGGCTAAA # Questionable array : NO Score: 8.54 # Score Detail : 1:0, 2:3, 3:3, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: R [matched CTAAAAGAATAACTTGCAAAATAACAAGCATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //