Array 1 702513-702874 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047120.1 Streptococcus pyogenes strain 1085 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 702513 32 100.0 35 ................................ AAAAAGCATATCACGAAAATCACCAATTACATCAG 702580 32 100.0 33 ................................ AAGTCATTTTCTGCTTCTGCTAGGTTTGCTTTA 702645 32 100.0 34 ................................ TTTTTACTTTGATTACATCCCGCAATGTCACAGC 702711 32 100.0 33 ................................ TGTCCGCATACCTTGATTTGAGCGAGTAAACTC 702776 32 100.0 35 ................................ TCCATTTTTTACTTTCTCATGTGGCAAAACATAAT 702843 32 96.9 0 ...............................G | ========== ====== ====== ====== ================================ =================================== ================== 6 32 99.5 34 GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Left flank : AAGGCTATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAAGCTAGCTTTCACAGAAACACCTTGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTGTGCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCA # Right flank : GATGAACCCGATCTCTCTTTTAATGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGCCACTAGCTTTCGGTAAACTAAGGGTAACTTAAGAGAGGAGTTATTTATGACACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCCTTTTTCTCTCCGTGTATCTTTCCGGTCCTTCCTGTCTATTTAGGCATTTTACTGGATGCAGATGATTCAAAGACGATTACTATATTTGGTAAAAAACTCTATTGGTATGGCATTGTCAAAACTTTAGCCTTTATTTTTGGTCTATCTACTATTTTTGTGATTTTAGGTTACGGGGCTGGTTTTTTAGGAAATATCCTTTATGCGGTATGGTTTCGGTACTTACTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 1189200-1188636 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047120.1 Streptococcus pyogenes strain 1085 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1189199 36 88.9 30 ....AC.GA........................... TGCATACAACGCTGAGCCTGTATAGCCTTT 1189133 36 100.0 30 .................................... AGGTTTAACTTCAGGAGCTTTTGGTGCTTC 1189067 36 100.0 30 .................................... TTATATGAACATAACTCAATTTGTAAAAAA 1189001 36 100.0 30 .................................... GGGTGGTTGGCTGACGCATCGCAATATTAA 1188935 36 100.0 30 .................................... AGGAATATCCGCAATAATTAATTGCGCTCT 1188869 36 100.0 30 .................................... CGAGCAATACCAAAAGCGTTACAGCTGTGT 1188803 36 100.0 30 .................................... AATAGAGCTAGACAAAAAATTGAGTTTGAC 1188737 36 100.0 30 .................................... CGAGCAATACCAAAAGCGTTACAGCTGTGT 1188671 36 88.9 0 .............................T.C.TT. | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 97.5 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AAAATATTTAATGTATCAGTAGATGATTTTTTACCAAAGGACTGACAATATCTAATTTTAAATTTACAATATAATTAATGACATAGTAGCTTAGCTATGAGGGTTGAGAAATATGGTAGTAATCCATAAATTAAACAGACTGCAGTTTTTGCCAGTCTGTTTTTTTAGTCCATTAAACCAGACTAAAACAAAAAAGTCCTTTTTAAGGGACTTTTTACGAATAATAAGATAAGGAGGATTTACATGCTAACATACGACGAGTTTAAGCAAGCGATTGACAATGGATATATCACAGCAGACACAGTAGCGATCGTGCGTAAAAACGGATTGATATTTGATTATGTGTTGCCGCACGAGTCTGTGAGATCGTGTGAGATTGTGATCGAGGAGAGGGTGGCGGAGGTGATGGTGGAATTAGACAAATAAAAAAAGACCTTGTCCAAAAGGTCGTGGTATAGTCGGGGACAGGTAGTCCAATCTATTGATATAAAGCCTTTTTA # Right flank : AACATTGCCGATGATAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGATACCTTCCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTAGTGTGATGGAACAAACATTTTTTATGATTAAGCCATATGGGGTTAAGCAAGGGGAGGTAGTTGGAGAAGTTTTGCGGTGGATTGAACGCCTAAGATTTACGTTTAAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGGCCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGATAATTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTAAGGATGCTCTTTGCGGAACCATTCGTGAGAATTTTGCTCAGGCTCCTGGTGATGATGGAGGTATTTTTAACATGGTGCATGGGTCTGATTCAAGAGACTCTGCTA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], //