Array 1 610097-604187 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHDZ010000001.1 Neptunomonas phycophila strain 3B05 3B05_9_S9_L001_R1_001_(paired)_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 610096 28 100.0 32 ............................ TATTCTCAGACGGAATAAGATTCCAAGCACTT 610036 28 100.0 32 ............................ AATGATTACACCAACAACGGCAAGAGCAGCAA 609976 28 100.0 32 ............................ GGTAGGCGCTGGCGGTGGTGTCGGGTCGTCTT 609916 28 100.0 32 ............................ TGATGGTCTTGGAGAGCGTAACGTTGCTGTTG 609856 28 100.0 32 ............................ TCCCGTTCGTGTGCCATATCAACACCGAAAGC 609796 28 100.0 32 ............................ TCAACGGTGTAGAGCCAACCGAGAAAACGCTA 609736 28 100.0 32 ............................ GCTAACCCCACCAAATACGCTTGGCCAGATCC 609676 28 100.0 32 ............................ GGAACATCCGGCGTTTCTCAATCACTTTATGA 609616 28 100.0 32 ............................ AGTGCCTTTTTTGCGACCTTCGATAGATTCTG 609556 28 100.0 32 ............................ AATAACGGCAACGCCAATCGCAACAACAGAGG 609496 28 100.0 32 ............................ TCTTAGGAAAATCAATGGTTGCTGGTGTTACA 609436 28 100.0 32 ............................ TAGCCGTGGGTTACATGCTAGCCCCAGAAATC 609376 28 100.0 32 ............................ GCTACGTTATTTAAATCAAAGTTCATCTGAAC 609316 28 100.0 32 ............................ GAAGTGTCACGCCAAGTCGATTGGTACGGCGA 609256 28 100.0 32 ............................ AAACCCTGTTTATGCCTACCACACTACACCCT 609196 28 100.0 32 ............................ ACCCTGCCGGAACTCAACGATAATTTCACATT 609136 28 100.0 32 ............................ AGCGAGCAGGTTAACCATGCCGACGCCTTCGC 609076 28 100.0 32 ............................ ATATCCTCAATAAATGAAGCACTGTCCATTCT 609016 28 100.0 32 ............................ TAAGATCATGATCTGCTCTATGCACCAATAAA 608956 28 100.0 32 ............................ TGTAGAAAGCCCACCCGATTGAGCAAATGGCA 608896 28 100.0 32 ............................ AATAAAAGTGATCACAGATAACCCAAGCATCC 608836 28 100.0 32 ............................ ACGAACACCGTCCAAGACTTTTCTTATATAGG 608776 28 100.0 32 ............................ GCCACATCGTCGATGTCTTCTGTGCTCATATC 608716 28 100.0 32 ............................ GCCACGCTGAGTACCATGCCTAATTTTACAAA 608656 28 100.0 32 ............................ AGAGAGCGATTCTGGGCAAAACGTAAATGATA 608596 28 100.0 32 ............................ TAATACTCAATTTAATCAAAAAGGGTAATAAA 608536 28 100.0 32 ............................ TATGCAAAAGCGCGCTGAAAAGGGTGATATTT 608476 28 100.0 32 ............................ TGAATCTTGACGTGGCGGGATCTATAGCGGAA 608416 28 100.0 32 ............................ ACCCACGATAAAATAGCCTCGCATTCAGAACG 608356 28 100.0 32 ............................ ATTCTAGTTATCTAGCCCAACATCCGTTGGGT 608296 28 100.0 32 ............................ TCCTCGGGGGGCTTTCTGCTTATGTCTGTATT 608236 28 100.0 32 ............................ CTGCCCTTCTCGTATCCTCTATAAATTTTTCC 608176 28 100.0 32 ............................ TGATATACAACAGAATCAAGATTCTCTTTAAT 608116 28 100.0 32 ............................ TTGGAATTGCTGCGAGCTAATAGCTTGAACCT 608056 28 100.0 32 ............................ TGCAAGATCCGCAAAATACCCGTCTGATGTCT 607996 28 100.0 32 ............................ CTACCCTTCTCGTATCCTCTATAAATTTTGCC 607936 28 100.0 32 ............................ AATCAGATTCCTTATCTCCAGCAGCCCTACCC 607876 28 100.0 32 ............................ GCTATGATGCTCCCTTGATTCAAAATAGCAGT 607816 28 100.0 32 ............................ TATGGTAATTTTGAGACTATTACTGTCGGTTC 607756 28 100.0 32 ............................ AGATTGTTAGCGGTACATCGACCGTTTTCGAT 607696 28 100.0 32 ............................ GATTGTTTCTTTTCTGTATTAGTTTGTTTCTG 607636 28 100.0 32 ............................ TTTTTATAGATGAGGACCTAACACCAAGCGGA 607576 28 100.0 32 ............................ ACTGTCTCTTGCCATCCCGGTAGTCGCTGTAG 607516 28 100.0 32 ............................ TAATGTATTGAGTGTATCTAAAGATATTTTTG 607456 28 96.4 32 ......................A..... ATAGTTGGATCGTAGGCTCTGTAACCGCTATG 607396 28 100.0 32 ............................ ATTAATCGTGGCGTGCATTGCATGCTAGTGTT 607336 28 100.0 32 ............................ ACTAGCATGCGTACCGACTAGCGGCACGGCTG 607276 28 100.0 32 ............................ AACAAATCATCCAAAGCAGGCTGAGAAACAGC 607216 28 100.0 32 ............................ TTTCTTTCGTGCCTTAATTTCAGGCTTGAAAA 607156 28 100.0 32 ............................ GATACCATGTTCAGCATGCGTTTTATTCAGAT 607096 28 100.0 32 ............................ TGACTCCATTTTGCTGGCCATGGCCGGAAGCG 607036 28 100.0 32 ............................ TCAACGACGCAAGGTTTATCGTAAACGGTGCC 606976 28 100.0 32 ............................ TGGCTGTAGTGCTTTCTTGATTAAGTGCTGCA 606916 28 100.0 32 ............................ GACCAATCTGGATTAAGTCCGGCCGCTTTGAT 606856 28 100.0 32 ............................ TATGCTCTGAATAAGATTCCGTGCCGTCGCTG 606796 28 100.0 32 ............................ ATCTAGGTCATGTAAAGACTCTTTGAACATTC 606736 28 100.0 32 ............................ AGCACGCACAACACCGGGGACCAACACTAGGG 606676 28 100.0 32 ............................ AACGAAACATAAAAGCAAGCAAGGCCCGACCA 606616 28 100.0 32 ............................ TTCACGAGATACGATTATTTCCCGCTCTTGGT 606556 28 100.0 32 ............................ GGAAAATCTCTCTATGCTACTAAGCTTATTCT 606496 28 100.0 32 ............................ TATCTAACTCTATACCGATAAAGGATCTATTT 606436 28 100.0 32 ............................ GTCTATCGGGAACGCTCAGGCGGCTTGGGATT 606376 28 100.0 32 ............................ TTGCACTTGCTCGATCTGCACTAGCTGTATTG 606316 28 100.0 32 ............................ GTGTCCTGCGGCGTTGCGAAAAATGTCTTGTA 606256 28 100.0 32 ............................ GTCCTCATTAGATTGGGACAATACTGAATCTA 606196 28 100.0 32 ............................ GTCTATAGCAATACACGCTGCTACATCGTCAA 606136 28 100.0 32 ............................ GACATTACGCATTTCAACGTGGTTGATTATAC 606076 28 100.0 32 ............................ ACATGAAGAAGTAGACCCTAATGCCTTGATTG 606016 28 100.0 32 ............................ CTCCCAGCGTCAACTATGAGCCTCACAGAAAC 605956 28 100.0 32 ............................ AGAGCGTGCTGCATGGGCATTTTCTGATTGAG 605896 28 100.0 32 ............................ CAAACTGAGGCGCTGACGGCACTCCCCAGGAT 605836 28 100.0 32 ............................ TCGAACATTTTCACTACCCCTTAATTAATGTA 605776 28 100.0 32 ............................ TTGATGTTGCTCTGGATTTTCTTGAAGGTGAA 605716 28 100.0 32 ............................ TAGACGATATTGTTGCGTCAGCTATCAGAGCT 605656 28 100.0 32 ............................ CGTCTCGCATCCATGATCGATAATTACTTTTA 605596 28 100.0 32 ............................ AGAACTGAATGTTCGGTCTATGAGTGCTATTA 605536 28 100.0 32 ............................ CCACGGTATAGCTGGGGGTATTTTCGTCAGAT 605476 28 100.0 32 ............................ CGTAAGTAACAGCGGGCATATATACGCCCGTC 605416 28 100.0 32 ............................ CGTAAAAAGACACGCCCACACCTGCGCCGCGC 605356 28 100.0 32 ............................ TAATGAAATCCAGTTGCCGTCAGATTCGTTAT 605296 28 100.0 32 ............................ CTGAACATCAAGCGCAAGATGAACAGAAACCC 605236 28 100.0 32 ............................ TGGCGGGCAGCTATCAATCGTGTCGGCAAGAA 605176 28 100.0 32 ............................ TGCTAATGCTTCGCGTGCACTATTTGATTTAA 605116 28 100.0 32 ............................ AAGAGTATTTAAATTTCTCGATTGCGCTGGAA 605056 28 100.0 32 ............................ GGTTATATGTTTTGAGTGAAACAGGACAAATC 604996 28 100.0 32 ............................ GATCAGAGCAGAGGGGATAGTGATGCAGTTAA 604936 28 100.0 32 ............................ AAGCGGCTTTGTAAGCGCCTCTTGTGTAATCC 604876 28 100.0 32 ............................ TTCCGTAGTTTCTTCAACTAACAAAGGGTTTA 604816 28 100.0 32 ............................ TTATTGGTTCTTCGGGTCAAGTGATAGACGTA 604756 28 96.4 32 ..........G................. TGAGAAATGAGCATTACGGCTCCTAAAAAACC 604696 28 96.4 32 ..........G................. TTCTGGATTATTTGAGGTTCGCAACCCGAAAA 604636 28 96.4 33 ..........G................. AAAAATGCGTTTGATGATTATGACGATTGGATA 604575 28 96.4 32 ..........G................. ATTACGCATCCACTTCGGCATCGAAAACTTGT 604515 28 96.4 32 ..........G................. TAACTATTAGCAACAACAACAACCGCAAAGCG 604455 28 96.4 32 ..........G................. GTCACTAAAACGCACCAGCCACTCGTCTACAT 604395 28 96.4 32 ..........G................. GATATAACGCTTAAATGACAGCTCTTCTATTT 604335 28 96.4 32 ..........G................. TATCAACTCTTTGTAATCATGAGACAGGAGAG 604275 28 96.4 32 ..........G................. CATCTTTAATTTTGACCCGCGAGCAGAACTCG 604215 28 85.7 0 ..........GA..........A.A... | A [604195] ========== ====== ====== ====== ============================ ================================= ================== 99 28 99.5 32 GTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : ATGTTTCTTACGTAAGCTTTGTCCGTAAACAAGTTAAATCGCCAGCGCGAATTGAGCGCGATATGCAGAGTAAAGCCGCATTACGGGCTTTGAAATCGGGAAAACCGCTAGAGGAATGCTTAACTGAACTTGAAAAAAGCAGACCTGCAACTCTATGTTGTTTGCCATTTATCTACTTACATAGCCAGCAAACTAAGCAGCGCTCGCCAGATAAAAATAGTAAATTTCCACTGTTTATTGAAATGCATTCTCAAAGCGAGGAGCAGGTTGGTGTGTACGATTGCTACGGTTTGAGTACCAAAGAAAATGGCAAGCAAGTAATCGCCACTGTACCGCACTTTTAAAGGTACTGTGAAAAAGGGTAAGTTTTACCCTTTTTTATGCTCTTTAAAAATATGTTTTAAATACATGAAGTTACAATGAGCGGTTTTTAACAAGGTAAAAGTACGATTTTTATCTTAACTGCTTGTTGTAACTTATTTTAATATTGCTAATCTATT # Right flank : CTGTCTCGATAATACGCTGATTGGAATGTTCTATATGGGCTTTGAGTAGTTCACAGGCGGTTTTTTCATCTCGTTTAAACGCGGCTTCCATGATGAGTTTATGGTCATCTTGATGGGCTGTGTTTTGAGTGTCGTTAGTCGTTTGCTCTGATTGATGGATAAGTGACAGTCGGCGATATCGTTCGGATTGATCATAGAGTGTTGATAAAAAACGTAATTGCCATTGTGATGGGCATTGGCTGATCAGTGCCAGATGAAAGAGCCTGTTTTCTCTAATCAGTTCGCCTGCCATGGCTTCGCGTTGGCCTATGGCTTGTTGTTTGATGGTGATTTCGCGATGGCGTGCTCCGGCGATGCTTGCTTCCCAGTTGAGATCGCCCAGCCGAATAGACTGTGCCAATGCATCTACTTCTAGCATGACTCGTAAGCGCGATACTTCTAAAAATTCTTCTAACGAGACTGGCGCTGCCCAGTAGCCTCGTTGCCCTTTACGGGTCACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //