Array 1 2066-1408 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWEO010000075.1 Bacteroides faecis strain jmh56 NODE_75_covk_19.870781_covr_42.17_cutoff_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 2065 47 100.0 30 ............................................... TTGAGCTTAGATTGAAAGAAGCCGAAATAA 1988 47 100.0 30 ............................................... TCCTGTTTTATTAAAAGCATCCCTATTCTC 1911 47 100.0 29 ............................................... CTTGCAAGTTTACCCCGAAGCTCATCAAC 1835 47 100.0 29 ............................................... CGCAGTACGCATGTAGCAAATTATATCAA 1759 47 100.0 30 ............................................... AAGTGGTTGTAAGGAATCGAAGTGAAAGAA 1682 47 100.0 29 ............................................... CATACAGCAATGGAGCAACAATCAACAAC 1606 47 100.0 29 ............................................... GGTGGTATTCACGAGGGAAGAGAAATCAT 1530 47 100.0 29 ............................................... GCGGAGATAGATGCCGAGACCAAGGGAGA 1454 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 9 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGC # Left flank : AAACGATTTCTTTATTTAAGTAAAATATACGACGGTTATATTGCCGCATACGCTGAACAATAGTGCCGGAAACAAAACTTCCACGGATCAAATCCTTCATGGTACATTCCGCAATCCAAGCCGCATCACGGACATCACTCTTCCTACCAGGCAACTACTTGATGAAATAAGAGTTCACTAACTTGATGTAACTCTTCCAACTCAGGCGTCAAAACACCATATTTGAATTCTAGTTTGTCGCCATTATCATTCAAGATACAGGCAAATACACTATCTTTGTGAACGTCAAGACCACATACTATTCTCATTGGAGATAACATTTTTGAGACTATGAGCTCGTCAAACATTTATTTTGAGGCTCGTCCATCGATACCTCTCACGCCATAAAGATAGGGGTGGGCTTGACTTTTTCTTATTACACTGGCATATAAATCGCAATTTATATCTAAATTTGAGCCATTGAATACAGCTGATTCCGTATTTCTCGCACGCTTTCGCTA # Right flank : AGAATCTACATATCTAACTGTAGCACAACATACTAAAGCCTAATATAGGAAATAAAAAAGAAGCTGTATTTAACAAAAAATCCCGTTTTTTCTACGGGATTTTTTATTTTAAAATAGTTCTAACTGTTGTCCTGGCGTATTCACCATCTGTATCTTTTTCCCATAAAAAAGTTCAATATCCCCAAATTGTTTATCAGTTATGCACATAATTCCAATCTGCCCATATTCAGGAAGAAAGGATTTAACCCTTTTTATATGTACTGCTGCATTTTCACTACTAGCACAATGTCGTACATAAATAGAAAATTGAAACATAGTAAAGCCGTCTTTCTGTAAATTCTTTCTAAAATCAGCATAGGCTCTTTTATCTTTCTTCGTCTCCGTTGGTAAATCAAAAAGAACAAGTACCCACATAATACGATATTCACTAAAACGATCCATTAACGTTCGGGATAACTTATACGACGTAATTCTCCATCAAAACACTTATACAATGATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 32896-31699 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWEO010000057.1 Bacteroides faecis strain jmh56 NODE_57_covk_24.612140_covr_52.21_cutoff_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 32895 45 87.2 30 ...A.-...CA....T..-............................ TTACGTTATCGGTGAAAATTACGAGATGCA A [32886] 32819 47 100.0 30 ............................................... ATGAGAATGTACGGAAGTATCTGCGTCAAA 32742 47 100.0 30 ............................................... ATGCAGCCTTTTTTTTGCACATTACAGGGA 32665 47 100.0 30 ............................................... GCAATTGAACTAATATAAAATACAAAATTA 32588 47 100.0 29 ............................................... TTATCAAGATTTAGGATATTTCAGAGTAA 32512 47 100.0 30 ............................................... CAGGGAAATTCCATAGTATAATATGATAGT 32435 47 100.0 30 ............................................... AAAAGTACCTACAAGCTAGTAATTAGTTAT 32358 47 100.0 30 ............................................... CAAAGCTGCACAATGAGTTTAAGCGTAGCC 32281 47 100.0 29 ............................................... CTAGTTACAGCAATGATTTATGCCTGCAA 32205 47 100.0 30 ............................................... TCTAGTTACAGCAATGATTTATGCTTGCAA 32128 47 100.0 30 ............................................... TAAGCGGGAAGATTTCGGAAACGTACCTAA 32051 47 100.0 30 ............................................... AATTGGATACCAAGATTCATTAAACGGTGA 31974 47 100.0 29 ............................................... AGTAGATAAGAGTGTATAACGGGAGGGTG 31898 47 100.0 30 ............................................... TCCAAGGCCAATAACGAGGATTATAACCAA 31821 47 100.0 29 ............................................... AAAGAGGAGGAATAAACAATGACAGTCGT 31745 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 16 47 99.2 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : GTTCACAAGTTACATAGGTGGGGATTCCATAGTTGGCGATCTCCTGCATAGCAGCCGCACGTTCTTGAGGTACCAGAGTATTCCGCATTATATCCGGATAAAAACGGTTCGTCTCAATGGTCGTACAAAGAACGGATTTCTTCATAACCGGATGCTCCAGATATTTCAGAAAACGGGCGGGATTCTTTGACTGGAAGAGATACTTGTTATCAAAACCGTCACAATAGTCCAGTATCTGCTCAATCCATTCTGACGGGACATTAGCCGCCCATTCATCCGTACTGCTGCCTACAAAGATAAAGTTGCCTTCACCCAGATTCACTTTCAGTTCCTTCAGCTCCAGACGCAAGGGAGGCAGGAGAAGTTTACGTCTCATAAAACAATATGAACAAGAGTGTTCACATTCGCCTTTCATCGGGTTATATGTATGTGAAACGAAGGCATACATGTTCCCGGTACTTTTATTCAGTGCCATATATCATTATGCTTTTCACATCCAT # Right flank : ATATTTTATATAACAAAATGATTTCCAACAAGTTAAAAAGAAAATTAGAAAAGAAAAAAAGTCTGTTTCCAGCACAAAATCTCGCATTAATGCGAGATTTTGTTTTTTAAAATAACTCTAATTGTTGTCCAGGCGTATTAACATTCTGCATTTTCTTTCCATAAAAAAGTTCTATATTACCAAACTGTTTATCGGTAATACACATGATTCCTACATGTCCAAACTCCGGGAGGAAAGATTTAACTCTTTTTATATGTACTGTAGCATTTTCACTACTAGCACAGTGACGCACATAAATGGAAAATTGAAACATAGTAAAACCATCCTTTTGCAGATTCTTTCTAAAGTCCGCATAAGCCTTCTTTTCTTTCTTCGTCTCAGTCGGCAAATCAAAAAAAACAAGTACCCACATAATACGATATTCACTAAAGCGATCCATTATCGTTCAGGATAAGCTATTCGACGAATTTCTCCATTGAAACATTTGTAAAGTGAGGAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //