Array 1 601981-602488 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKFV010000002.1 Providencia stuartii strain FDAARGOS_1035 000002F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 601981 28 100.0 32 ............................ TATCGGCGCAGGTGGTGCTTGAATAGCAAAAT 602041 28 100.0 32 ............................ GATATTTGAGAATACACGAACACGAAAATAAT 602101 28 100.0 32 ............................ TCAAAGAGAATCAAAAAGCGCTTTATGACTTA 602161 28 100.0 32 ............................ AAATCATGTCACTAATGAATTAATTATGACAT 602221 28 100.0 32 ............................ GCAACAGATAGCGCAGAAGATGTGACTCGCGT 602281 28 100.0 32 ............................ ACTCTGCAAGCGTAATAACCAGCATCGGATTA 602341 28 100.0 32 ............................ TTGCGGTTTGCTCGGTACCCACCCTGAAATAT 602401 28 100.0 32 ............................ GGCATGTCTGCATTCTGATTGTGGAACACAAA 602461 28 89.3 0 .................T...C..A... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 GTGTACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGTTGGTTAATGTTTATCAGCGACATTCTTTGTTGGAATAGACCAAATGCCCTTATGGCAAGTAGGGCAGTATTTTTGATTATTTGTAAAGTCGTCATGGCACGGTACACAAAACCAATCCATAACCTTTAAAATCGGTAAAACGGAATGAAATTACTGATTAAGTTTATACGTTGAATGAGTTAACAATAAGGGCCATTTTAATAGATACATTAAAATGGCCCTTATTGTAATAAGTTGATTAATCAAGCGAAGGTTAAAATGTCACTATTACTTTTGAAGAGATTGTTTTATCCGCAGCTTCTAATAAGGCTCTTTCTATCTCTTTTGATGTAAGAAGGGGAAGATGCGTGATAGTTATCTTATTTTACCTTCTATTTTTATTGAAATTTTATTCTGTTTAAAAACAAAGTGTTATGATGCCCTCTAAAAAATAAGGTATTTTGCACAAATTAGCCATAATTTATTGTTGCACGAAGGTTTTTTCCTGATAGTTTATA # Right flank : ATGATAAATGATTATCCTGTGCGCTTTCCAATAAGCTGCACAGGCTTCTTTTTTCGCTATTTTAAGATTAATAATTAGATTATATTTATTGAGATTTCTAGTTTATTAAAACAGTGCAATTCCTTTAAACAATAAAATTAATCGGTGAGGCAGGATGAAGCTGCTAAATAAAACAATCTATACGCTTATTGTGGCATTTATATCAACAGCGGCAATGGCAGAGGAGTGTATAGGTGATAGTACCTATCAAGCATGTACAAGATCGAGTACTAATGCACAAGGCGATAATATTATTGAATCGTATGATACTGACGGTAACTCATATTCAATAACATCTGGCTCAAGAGACTATGCGAATGGTTCATCTGAAGTCTTTTCAGTTGATAGTGAAGGCAATGAATACTCGATAAAAAGTTGGTGTGACAGCTCTGGATGCCATACATCTGATAGCGAAGGGAATACGTGCACAATAACAAATACTGGTGAGATGATAGGCTGTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTGTACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 110586-110974 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKFV010000005.1 Providencia stuartii strain FDAARGOS_1035 000003F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 110586 28 100.0 32 ............................ CGTATCTCTTGCGGGTTTCTTTTTAAAATCAC 110646 28 100.0 32 ............................ AAGCGAAATAACGTTGAGCCGATGATTGAAAA 110706 28 100.0 32 ............................ TTATCTTCGTTTCTGTGTGCTACCTGAGTACC 110766 28 100.0 32 ............................ TTTTATTCGTCCAGCCCTCGATTACAACCAAC 110826 28 100.0 32 ............................ TTACCTCTTTTCGCATCACCGCAGGTTAGAAA 110886 28 100.0 33 ............................ AAAGGAATTGCGTGATAGATGGCAAACTCCCCT 110947 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAATCAGCGTTAGATAAAATCTCAAATATTGAGTCGAAGCAGGGGTTGCAACTACAAGAAATTGATCAGTTAAACTTTCTAGCAGATACAAGAAGTATTCAAAATAGTCAGCGCATAAGTGAGTTGTTGGATACAAATTGGACTGGAGTCACAACAGACTATTATAAAGAAATGGCTATGTTCCAAGCATCGCAAGATATTTTTAAAGATTTAAATAGCATGTCATTATTTGGTGGTCGCTAAGACGTGTGCCAGTCTCAACTCATTTGAGGCTGGCGCAATTACCGTATCGTTATTTTTCCCTACAATTATTTTCTTTTCTCTTATCCTATATTGCATTTCTCTTAAGATGATTTACTCTTTATTTTACCCTTTGTTTTTGCTCTTTAAAAAATTAGCCAATAAAACAATAAGTTACTAAGTGTCATAAAAAAGAAGGTATTTTTCTAAAAAATAGGCTAACGAATTGTTATTTAGGGATTTTGTTTGGTAAGCTAATT # Right flank : ATGAACGTTTCCAAAACAAACGCATTAAGCAAATTGATGAAGAAAGTAAGTCAATTTACTACGAAAACTACGAACCTGCGACGTTCCTGATTCACGTTGGATTGATATGCTTGTCGAAATGCCAAGTAATTTAATCTACAATCAGCGACAAGCAGAAGCAGAGCGATTAGCAAAAGAAGCAGCAAAGAGAGATGCTAAGCTTGAAGCTGCATCACAGATAGAGGACAATAAAAATTAATGCGCCATCTTGAGTAGTTGGCGCATGTGTATATTTATTCTTTAGGGTTTGAGCCAAATCGGTTGTTACCTGGGGTTCCATCAAGGCATGTAAACACAAAAATGACAAGACCACCAAAAGGTATAAATGTGAGCAAATACCACCAACCTGACTTATCTATGTCATGTAAGCGCCTAACAGTTACTGCAAGGCTAGGTATTAAAATAGCTACGCAATAAATCATCAGGAGGACTAGAGCTACGATCCCCAAACCATTTATATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 124132-125180 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKFV010000005.1 Providencia stuartii strain FDAARGOS_1035 000003F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 124132 28 96.4 32 ...........T................ GGTCAGAAAAAAATCACTCATGACAGCAATCC 124192 28 96.4 32 ...........T................ CGTTACCGAACTACATAATGGATATTAGATAT 124252 28 100.0 32 ............................ TTACTCAGAGCATCTTGAAGCAGGGCGTTTTG 124312 28 100.0 32 ............................ TGTATTAGCATGAGTAATACATATCCGATTAT 124372 28 100.0 32 ............................ TACATCATAGAACATGCAGAACTACTTGCTGA 124432 28 100.0 32 ............................ GATCAGAGCTGAAATAAGGAAGAAAGCAAGGG 124492 28 100.0 33 ............................ AATGCTAAATAAATCACTAGGGGGGCTATTCCC 124553 28 100.0 32 ............................ ATTAGTACCAATTGTGTTAGCAAGACCAGTCA 124613 28 100.0 32 ............................ TTGGCACAGGCGCTTCCTTCGTATTTGCTGGC 124673 28 100.0 32 ............................ ATCAACCTGTACAGCTGGGAATAAAAACGTAT 124733 28 100.0 32 ............................ TTCATTTATTCGCTTCTGCTCCATTAAATACA 124793 28 100.0 32 ............................ TGTATTTGCATTCATACCGGCATATTTCATTG 124853 28 100.0 32 ............................ ATCTTTATCCCACTTGCGTAGGACGACGACTT 124913 28 100.0 32 ............................ ACGATTTGAACGTGTGATGAAACAGTATGAAT 124973 28 96.4 32 ...........T................ TTAACTCTCTGTATGGAACCTAATTTATTTTC 125033 28 96.4 32 ...........T................ CGCCCACTCTCACCGTCCAGCGAAGCCATAAG 125093 28 96.4 32 ...........T................ ATCTCCCCGAGCAAAATAGGCACAGGGCGCCC 125153 28 96.4 0 ...........T................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTCAAACGGTGCCAGAGCATGCCACGCCAATTAGTTATGTGCGTCAACATGTAAAAGGTGCAAAGCGTTTTGAACTGGATAGGTATAAGAAAGCTCAATTGTATTCAGTAAAATCAGGGCAGCCTATTGAGGTCTGTTTAAGCGCAATAAAAGAGCCTCAAACGCGTAGTCGTTTACCTTTTATTTGGATGGAAAGTCAGCAAACAAAGTCTAAAACAGAAGGCGATGGGCATCGTCCATTTCCACTCTTTATTCGGTGTGTTGCTGCGAAGGAAGCAAAGGCAGGCACGTTTAATTGTTATGGGTTAAGTCAGTCTATGGGGAAAGGCGAAGAGGTTGCCACCGTTCCACATTTTTGACCTTTTTTACCCTTGTTTTTTTGCTCTTTAAAAATTAAACATAAAAACAATAAGTTGCAGCAGACTGTAAAAAAGAAGGTATTTTGATAAAAATAGCTTTAACTGTTTGTTGTGACTTATTTTTTATTTGATACGCTATA # Right flank : AAATGAAACATCAACTTGATTTTATATATTTTTCAAGGTGACCATTTTGGCTTGTTTTATAAAATACAAAGGTCGCTTCTAATTCTTCATTTTCGTCCAAAGTCACCGATAATAAAGGCGAGGATTTATTAATCGACTTTGTAAATACAACTGGTTTATATGAGGTACTTTGCTCACGAAAAGAACCATATTAGTTAGCCCCAATCACTTAGACTTCATCTTTATGACCAATTTGATAACGATTATCAATTGAGTTCTGAGATAAGCATCCTACTGAAATAAAACAAATATTTCCTCAGTGCGAGTTTGAAGTTGAGTTAAGGCTTCAAGTATATCATCATGATTGAGTATGCGTTTAGGCTTCTTTTCCGTCCGTTAGATGGCCCATTATCCGGAGGAACACCTTGAGAACGCGTATTACCATTTATCCTGAACCAATTTTATCAATTCTAATGTGCGGCCTAAGCGTTTATTATCAACGATAGCCCTTGGTCAACCTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 197882-198509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKFV010000005.1 Providencia stuartii strain FDAARGOS_1035 000003F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 197882 28 100.0 32 ............................ ATGACAGAGTTCGTCATGATGCTAAAAGCTAA 197942 28 100.0 32 ............................ ATCGACTTTAATGCCATAATTGGTTTGGTAAC 198002 28 100.0 32 ............................ TAAAGGCCGAGGGATTTTAAATTCGAGGCTTT 198062 28 100.0 32 ............................ TTCGAGATATGCTCTATAGCTAGCGCCTCCCC 198122 28 100.0 32 ............................ ACGTTGTTTGGCCAACTTGGCATGCGTTGAAA 198182 28 100.0 32 ............................ ATTTAACCAAGCCCCATTTTATGGCGACTTTG 198242 28 100.0 32 ............................ ACGCACCGGAGATATCAGCCATTTTCGTCACA 198302 28 100.0 32 ............................ ACAACAATTAATGATTGTTTCTGGAAATGCTT 198362 28 100.0 32 ............................ TTTGATGTGTCGGGGAACCTTGCTATTGCATC 198422 28 100.0 32 ............................ AATACAATTATTGATATCGCAAGTAGCATAAA 198482 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCAAACGACAAAAGGAATTAGGTGTGACTAAGATAGAGCTATTTCTTGGTGAACAGGGATTAGAGATTCTCCCAAGAAAGTGCGTAATATGTAGGTCAGGCAGGGAGCAGTACAACGTAGCCAACTATCTTTTTATGTGAGCATTGATGGCTGTTCATTGTGTCCGCTCGGTAGCGCTGAATAAAAAGTGTGTAAGGGAGGTAATGATCAGCTACTGATAGTTATTTAAGTGAGGCTCATAAATGCTGGGTAACTCATGGGTGACACGGGCTAAAATTGATGTCACAAAATCTCACAGATAGTTCAAATTTAACGTGTCACTATTAATTTTGATGGGTATAGAAGATGCACTGTTTTCCTCTTTTTTACCCTTTATTTTTTCACTTGAAATTTATTGATTAAAAATCAATGTGTTAAGAATCACTGAAATATAGAAGGTATTTTTCATAAAATCAGATGTAATTTATTGTTGAACATGGTTTTTTTCATGATAATTTATA # Right flank : ACAGATAGCAGTGTGTGGTTACGTTAAATTCCTTGCTTACTACACCGATAATGATGATGCCCTCCAGTCAGCTACAGATGTTTATTTAGACGATGTAGCACAAAAACGTGCTCACAATATCCCAGCAACCAAATCCTTTGATGCTTTCCGCTATTGGGTAGTAGAGCAATCTGGCCGTTATGAAACGTTCGAAATGCCAGACGGTAGCCTACGCCGTGTCGCTAAATCAATCAGCTTTGCAAGAATGGATGACCTAGCTTTTGGCGAACTCTACAAAGCCACACTCGATGTGCTTTGGAACTTCATTCTATTCCGTAAATTTCCCACCCAACAAGCTGCTGAAAATGCAGCTGGCCAGCTATTGGATTTTACCTAGAGGCAAGACCAATGACCCAAAAACAAAGACCAAAGAAGAGAAGCAGTGGTTATCAGATGTAGCCGAACTTGGCTGTGTTTGCTGCCGCAATATGGGATATGGGGCAACTCCTGCGGAAATCCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 219301-220229 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKFV010000005.1 Providencia stuartii strain FDAARGOS_1035 000003F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 219301 28 100.0 32 ............................ TGAATATAACAATGGTGACAATCTAAGCGAAA 219361 28 100.0 32 ............................ TTGCCTGATTTACTGTCCTCAGGGTAAATCCA 219421 28 100.0 32 ............................ TTGTTAGCGGGAATACCCACCAACACATCCAT 219481 28 100.0 32 ............................ TTTAGCTCTACGTTTCTGTAGCGTTGCTTCTG 219541 28 100.0 33 ............................ AAAGTATGCTTTAGCTGAGTTCGCTAGTTTTGT 219602 28 100.0 32 ............................ AAAAAGAACATCCGCAGCACTGCGAGCGTTTT 219662 28 100.0 33 ............................ CAGCGCAAGCAGGCAGACGAAGAACAACAAAAT 219723 28 100.0 32 ............................ TTTCATCAAGAAAGGTTTATGTTGGTATTATT 219783 28 100.0 32 ............................ AACCATCAACACCAACAACTGGAACTATTCCC 219843 28 100.0 32 ............................ ACGTAAACCCGCTACGCTGAACGCTTGGCATG 219903 28 100.0 31 ............................ ACGTAACAGAAAAGATGCTGGGGCATGAACT 219962 28 100.0 32 ............................ TCATCTTTCATTCCTGTATATGTAAAAGGCCA 220022 28 100.0 32 ............................ ATTAGCCTGCTTCCTTGCTCTGCAACTGAGTT 220082 28 100.0 32 ............................ AGTGGCTTCATTTGTTCAACGGTATCACCCGC 220142 28 100.0 32 ............................ AAATCCTTAATGGCGAATGAGAACGTGATTAC 220202 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTGTACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGATGGGTTCTTAACATTAAGAACAGATAATATAATTTCTGTTTCATCAAAAGAACCGGAAGATAGTGAGGGAGAGCCCACTGAATGGGGGATAGGTGCTTTGCATTTAGCACCAAGAAATTCAGATCAATTTAATCAGCTAAAAGAGATCCAAGGTAAAAAGGTAGATATCACTTGTGACCTATACCATGCAACCAATATTCATCACAAAACTCCGGTTCTTTGCAGTGTTGAACATTATGTTTTGGTTAAGTAATTGGCAGTATGGCATAAAACTGAAAACATAAAGTATCGTAGAAAAATGAAATAGGGCAACCTGCTATTCGTTTGTGATGAGTGACTGAAGGTACGATATTTTTATCTTTTTTTACCCTTTATTTTTTGCTCAAAAAATTTCCCTTTAAAAATAATAAGTTATATTATATCGTAGAAATGAAGGTATTTTGCATAAAATCGTTGTAATTTATTGTTGCGCTAAGATTTTTTCCTGATAATTTATA # Right flank : ATTGGCGATATCGCACTCATGGATGATTTTCTGGTGTACTCCGGATGCAACTCCCGCTATCGCTGGCAACACCAGAGGAAATTGTAAAACCAAAACAAATAGTGAAAGTAAAACAAATTATGCGGGAACCATATATTTGACATAACCTAAAACAGCAAAGTTTATCGATTATATTCGTGAAGCATTACACCATCAACATGCAAAAAGGCATCTCTTAGTATTCCCAATGATTGAAACTCATTTAACTTATGATAATACGTCGACTCTACCTGTTCACGGGTAAGGCCTGTGAGGTAATCACTTTGTTGATTTGTTTCCCAATAAATCTCACCTTTTCCTTTTATGAAGTATCCTCTTAAAAATCCAGGCCATTTATCACGCATGTTAGATATCAACAGAGAGTGGCTATCAGGCTGTGTTGCTTGAAATTCATGAAAAAAATCACCTCTAAAGATAAAAATATTATTGCATTTAGTACATTGATAGATATCTCTTACATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 227440-227707 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKFV010000005.1 Providencia stuartii strain FDAARGOS_1035 000003F_arrow_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 227440 28 100.0 32 ............................ CTTACGCCCCACTTCTAAGTGCCAAGCCGCAG 227500 28 100.0 32 ............................ TGACTAACTGCGAAAATACAATATCGTATTTA 227560 28 100.0 32 ............................ AGTCGCTCGATGTGTCTGTACGCAGTTGCACT 227620 28 100.0 32 ............................ ATAATCACCGCAATCAAAGAACCCTCCGTTTA 227680 28 92.9 0 .C......................A... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTTTATATTTATGGATGACGCTCTAGCTAAAATATAAACACTATAGAATTTCTTTTCGATAAAAATCATTAGGGTAACTCTATTTTAATGCCATTAGTGTATAGCTGATGGTTATTTTATTTTTAATGGTGATGCAGAAAGGGCTAGGGGATAATTGGTCAATAGGTATGTTTAACTTTACTTATTTGGTTAACCGGGATTTTATTTTTTCTAAAAGGTAAAAAGCGACTTTCAGCTTAACTAATGATTTTATAGGGCCATCAAACTATCTGTTAGGTGTGTGTGAAATATTTATTTTAATAGTATTTAATGTATAAAAGGTTGGGTTAATTTTTTCGTCTAATCAGCAAGTGATTTTCCTTGTTTTTTACCCTTTAAATTTTTAAAGTTTTTATATCCTTTTAAAACAATAGGTTATGTTACCTGATAAAAAAGAAGGTATTTAAGGGGAAATTGTTATAATTTACTGTTGCATAAAGTTTTTTTACTGATAATTTATA # Right flank : ATACGTTTTAATATAACTTAAAATTTCTACCTTATCCTTTCTAGCACACCCTTAATAAGATTTAGTGATTTTCACTTATCATGCAGAATAAAAGACTGTTAGCCTTGATGCGAAGTCAGAATAAGGCTTATGATATTTTGTACAGGGAGATTATTATAGGAATATTACCTATGGTGAGGAGGGGTGTTGATGTGTATTTTGAAAATACCAGCTCGGTGGAGGTATTTATATGAATAAGCTTTTTCGAATGTGCAACCTATTGCTATTAACTGCAAGCTTCTCAATGGTCTCTTTATCTTCCTATGCAGATCCCAATGGCGGTCATGGTCATGGGCAAGGAAAAGAGCATCAAAAAAATAAGCCTAACAAAGGTCATAATGGTAACGGAAAAGAAAAAGCAGATCATTTATCCTTAAATAAGAGTAATTCAATATCAGTATCATTAACTTACAATGAAGCAAGAGCACTCGCTTTAGACAGTGGTATTACAGGCTATCACG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //