Array 1 110685-110835 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031185.1 Levilactobacillus brevis strain SA-C12 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110685 29 96.6 32 ............................C CTTATCAACTGAACCAACTGATACACTAGTGC 110746 29 100.0 32 ............................. ATTTCGAAGTGAGAAGTTTGAGCTTTCCAATG 110807 29 89.7 0 .........................A.GG | ========== ====== ====== ====== ============================= ================================ ================== 3 29 95.4 32 GTATTCCCCACATGTGTGGGGGTGATCCT # Left flank : TGGAACCATATGATGATTTCAATGTGATGGGAGCGGCATTTTGCCAAGCCCATCCGGAGCAGGTCACCCAACAGCCGCTAGGTCAGCACCATCAGGCCAGGGCGATAGGGATGCGGGCGCTGGTCGACTTTGCGCGCGAGTATTATCGAAAAAAAGATCGACGCGAGATGAGCTAAAAAGTACAAGATATAAAAGCGTAGTTGTTAGCCGCGGTGAACGGAGTAGCGGCTACGTTTTATTGTATTATATAGTCTTCTATCCTTTGATTGTATCAAAAGGTAGTCACGATACTTTGGAACAGGCTAGTGATTTGGCGGCCTGGCTACGTAGATTAAGCAACTGGATCGTTACTAGCAATCTAAGTCGAAATTACTTACAAAAGTAAGGCCACAAATTCCGATTGTTAATCAAATATGAGTAGGGTATGCTTTAATAGTCAAAGTGATAAAATTTGCTGTTTTCTCTAAATGAAAATGCTGGTATATCAAGGATTATTTAGT # Right flank : GAGGCGTTTCAAAAATGATTGTAATGCTGCGCTTAAATCAAAATAGACTTTTTATGGAAAGATAATTGATAGAACAGATCACCCAACAGGCGCTGGATCGGTACCAGTAGGCCATGGTGATAGGATGCAGGTGTTGGGCGACTCTGTACGAGGACATTATCGAAAAAAATCGGCGTGAGATGAACTTATCGAGGAGTCTATCGGGTATTCAGGCACGGGGATCGTATGTATAAATGAGGCTAGCTGTTAAGAAATAAAGTGCTGGTGGTTGACAAAGTTAATGGCTCGCGTTATATTAATAATCGAACGATCGATCTTTTAAAAGGAGCCAATCATGCGAGAAAAAGATACGGCAAAACAAACGAGTATTATTGATGAGGTCAGTAATATTATTTTAAACGAGGGAATTGCAGCAGTCTCAATGTCCAAGATTGCTAAAGCAAGTGGCATTTCTTCATCAACGATTTACGTGTACTTTACGGATAAGGAAGATGTGTTAA # Questionable array : NO Score: 3.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2399163-2398891 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031185.1 Levilactobacillus brevis strain SA-C12 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2399162 29 96.6 32 ............................T GCGTATTATTTTGTTTTCTTTTCTTATTCATC 2399101 29 100.0 32 ............................. ATTGGTTGGGACTTCTTCGATACGCATACCGG 2399040 29 96.6 32 ............................T ATTGTGCGTCTTTAATAGATTTAAACTTTCCG 2398979 29 100.0 32 ............................. AGAAGTTAAAGTCGTATATTTTTTGGTTGTCA 2398918 28 86.2 0 ......................C-..TT. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 GTATTCCCCACAGGTGTGGGGGTGATCCC # Left flank : GGCACAAAAAGAATTGGCGGAGCGCTTAAATTTGACGGCGCAGTCAACCGCGGAATTCGTTCGGAAATTGGAAAAAAAGGGATTCGTGACACGAATGAAATCTCCTACGGACCAGCGAGTTACCGTGGTGAGTATCACGGATGCTGGGCGCAAGGAAACAACGAAAAATGTGCAACAAATCCCGCCATTCTTAACGATTTTAGATGATACGGAGTTGGATCAACTCGCGCATATTTTAGATAAGGTTAATCAGCATATGTATGAAGAAGTTAATGCCGCTAACCCAACCTGGTTCAACAAGTTCCATCAGGTCATTATGAATCGTATGTTATCGCAATTACATTCAGGCGAAGATCGGTAGGCTTGGTGTCAGTTTCGGCGATATTTATGGGGGCTGGTTTATTTGTTAGACAACCATGACGACCTGCACTCAGAAGCAAAGTGATGAGAATCGCGGTATTGCTAAAATGAGAATGCCGGTATAATAGGTTTTCTTTAGT # Right flank : CGCTACTTCCATAAACTACTAGTATTAGCGGAAGTAGCGCTGTCACAAGCAAAGAACTACCACAACTTGCAAGGTAATCAGGCTCAAAAACCACCGCACAATCATCAGCCATTTGGCCTAACAATTGTGCGGTGGTTTGTAGTGTCGAGATTATTTTTAATTAAGCGGCATTTAAAATCCACAAGAACAAGACGAAGACAACCGCCAGCCCGTACATCATAGCACCGACTTCCTTACCACGCTTAGCAGCCAACATGGTCAAAGGATAGGTGATGAAACCTAGTGCGATCCCATCGGAGATGCTGTAGGTTAAAGGCATTCCCAGCACAATCAGAAAGGCCGGAGCAGCTACTTCGAATTTTTCCCAATGAATGTTCTTTAGGGATTGGGCCATTAGCACCCCAACGATAATCAAAGCGGGGGCGGTGACTTGATCCGTCACAACTGCCAACAATGGAGAGAAGAACGCGCCAAAGATGAAGAGTATCCCAGTGACGATG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //