Array 1 289474-289326 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZHX01000001.1 Xanthomonas albilineans strain FIJ080 Xal-FIJ080-G1-Mol001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 289473 28 82.1 32 CC.AG.G..................... TCGGCAAGCGCTATGTCATCGAGGGCGCGGAA 289413 28 100.0 32 ............................ CGCTGGCGCAAGCTCAAGAAACGGACGAATGT 289353 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.8 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CGGCGTGCCGTTCACCGGCTTCCTCTACGCAGGGCTGATGATCGACGCCAGTGGCGCGCCGAAGGTGATCGAATTCAACGTGCGCTTCGGCGACCCGGAAACGCAACCGGTGATGCTGCGCCTGCAATCGGACCTGCTCGATCTGGTCGAGGCAGCGCTGGATGGGCATCTGCATGCGACCCAAGCGCAGTGGGACCCGCGCCCATCGCTGGGGGTGGTGCTGGCCGCCGCACCATATCCGGACACACCCGTCACCGGCGAGCCGATCACCGGCCTGGAGGCGGTGCCCGCCGATGCCAAAGTGTTCCATGCTGGCACCGCGCTGGATGCGCAGGGGCGCGTGGTCAGCGCCGGCGGCCGCGTGCTGTGCGTCGCCGCGCTGGGCGATAGCGTGGCCGATGCGCAGCGCCGCGCCTATGCCGGCGTGGCCCGGATCCACTGGGCCAGCGCTTTCCACCGCCACGACATCGGCTGGCGCGCCATCGCGCGCGAACGCGGCG # Right flank : ATCAGGCGCTGGATCGCCACGCCAATGCCTCCCATTCACTGCCGCACCCGGTGACGGTGATCGCGTCGCGCCAACCACGGGTGCGCTATCTTGTTGCGGTGCACACAGCCTCGCTCGAATCCCACCTCAGCCGCCTCTGGGCCCATGAAAAGGCCAGCTACGGCCTGCGCGTGTTCATCGCGCTGGCCGCGGCGATGGGTCTGTGCTGGCATCGCCAGCAGTTGGATGCGCTGCCGGCGATTTTCCTCGGCACCATCGCCAGCGCCATCGCCGAAACCGACGACAACTGGCTGGGACGGATCAAGTCGGTGCTGCTGTCGCTACTGTGCTTCGCCGCGGCCGCCGCCGGCGTGGTGGTGCTATTCCCGTATCCGCTGGCGTTCGCTGCCGGTCTGGCGCTGTCCACCTTCGCCTTGACCCTACTCGGCGCGCTCGGCGAGCGCTATGCGTCCATCGCCCAAGGCACGGTGGCGCTGGCGATTTACGCGATGATCGGCATC # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2706329-2706718 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZHX01000001.1 Xanthomonas albilineans strain FIJ080 Xal-FIJ080-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2706329 28 96.4 32 A........................... TGCTGATTGCAGCTCGTCCACGGCTTGTCCAC 2706389 28 100.0 32 ............................ TGACGCAGACCGAGGCCGCCGCGCTGGTGCAC 2706449 28 100.0 32 ............................ ATGATCTTTGCAACAGGTGGCGGGGATGGCTG 2706509 28 100.0 33 ............................ ACTGCGGCTAGTGCAGCAACACCAGAAAAGATA 2706570 28 100.0 32 ............................ AGAACGGCATGACTTGCATATAGCCGCGCGCA 2706630 28 100.0 32 ............................ TTCGAGGCGAAGCTGAAGGGGGATGCGTTTCA 2706690 28 96.4 0 .........................C.. | T [2706714] ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.0 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TTGGTGGTTGCATGAACGCTCCAATCACGTCAAAAGCCAAGTGGTTTTTGCACATTTTTTGCTTATTTCTTGAACAGGCCATCAATGCCACGCAAAGCCCCCACGCCCTGCCGCCACCCTGGTTGCAGGAAGCTGGTTTCGGATGGTTCTGGCTACTGCGCCGACCATCAACGTGACAAGGTGGGCTGGCACAAAGACCGGCGTAATGCACATCAACGTGGCTACGGCGCGAAGTGGCAGAAATTGCGCGCCTTCGTCATGCACCGCGATCAAGGACTATGCCAGCCATGCAAACAGTCAGGACGCTTGACGCCGGCCGTGGCGGTGGACCACATCGTCCCAAAGTCGCAGGGTGGCACCGATCATCCAAACAACTGCCAGGCGATCTGCCATCGCTGTCACGTACTCAAAACGGCGCAGGAATCGCGTCAGGGGCGCGAAGGTGCTTGATGCAAGACAATTTGGACATATGCACAATGACAACGGTCATGGCATGCTCG # Right flank : ATGCTCGGGGCATCCATCGGACTCGATGCTGGGTAGGGGGGTCAAATCCTTGCGATGCAATCGCAAAAGACCGCTCGCCCCCTCAATTTTTCGCGCGTGCAAAATGAAAAACTTTTTTTTGAACAGATCCGTGTCAAAGCTAAGCGTTGCAAGGGCCTACAAGGCTGACTTGGCGCAGATCGAACAGGTCGATGCGACGCCATGGACTGCGGCAAGTCACGCGGACATGACCTCAGAACTGAAAACCTATGCGCGGTCGTAAACCTCTGCCTGTAGCAATCAAGAAGATCAAAGGTACGCTGCAAAAATGCCGGACCAACCCGCATGAGCCCCATCCCGAGGGGCAATTGGGTGCCCCCCCGGAGTACATGTCTGACATTGCCAAGGAGGCATGGACCTATGCGGTAGAGAACGCACCGCTGGGTTTGTTTTCTTCCCTTGATGCCACGGTTCTGGAACGCTGGGCCAATTGCGCAGGTCTGTACCGCGAGGCGCTGGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3421050-3422998 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZHX01000001.1 Xanthomonas albilineans strain FIJ080 Xal-FIJ080-G1-Mol001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3421050 28 100.0 32 ............................ GATATGTCACGAGCTGCAAGGTCGCGCTTAGA 3421110 28 100.0 32 ............................ TGGGGTGGTGTTCGGTGGGAACTGGCGAACAC 3421170 28 100.0 32 ............................ AATGCTCAGCGATATCATGCCACTTATGCTTA 3421230 28 100.0 32 ............................ TCATGATGTTGTTGCAGCGCGGTCGGCTGCGG 3421290 28 100.0 32 ............................ TGTGGGAAAAGTCTGATCTGCGGATTTTGTAA 3421350 28 100.0 32 ............................ ACCCGGTAGTGCCGGGCGACGTGTCGCAGGAG 3421410 28 100.0 32 ............................ TCATTGAATTTCTGCCACGGGGTTGGCAGCCC 3421470 28 100.0 32 ............................ TTTTTTGCTGCCCTGTGCCGACGCTGCCAGCA 3421530 28 100.0 32 ............................ GTGAGCGCTGGGCGCGCGTGTATCCGGCGGCT 3421590 28 100.0 32 ............................ CATCGACCATTACCTTGCTCATCATTTCCATT 3421650 28 100.0 32 ............................ TAATCCGGTCCGGATCGCCGTGCAACTAGGGA 3421710 28 100.0 32 ............................ GGAACTGGATGGGGAAGGATTCCGAGAAGTCG 3421770 28 100.0 32 ............................ CAGCCCAGCCGCTGCGCCCAAGGCAGCGTTAC 3421830 28 100.0 32 ............................ AGTCCGAGCAGGACGGCGGTCTGTAGGCCGAA 3421890 28 100.0 32 ............................ GTGCGCAGCATCGAAGCATGGATGATCGAAAA 3421950 28 100.0 32 ............................ GGAAGATTTCGACTGCGAAAGCGCTGCTTATG 3422010 28 100.0 32 ............................ AGAAGGCCATCGGCGCGGTCATCGCGCAAGGC 3422070 28 100.0 33 ............................ TATTAGCTTGCGCTACCTCCTGGTAATTTACCA 3422131 28 100.0 32 ............................ TGATCGCCTACCCACGTCGCAGCATCCGCACG 3422191 28 100.0 32 ............................ CAAAGGAATCGCCACATTGCCACCGAAAAATC 3422251 28 100.0 32 ............................ AAGCTGCGTCACGCTCAATGCGCGCGGACTGG 3422311 28 100.0 32 ............................ AAGCTGCAGGCATGAACCAGCCTCAATTTGCT 3422371 28 100.0 32 ............................ TAGCGCCACGAGTGCCGGTGCTTCCCCGCCGA 3422431 28 100.0 32 ............................ CATGCCGTTTTACCTACGCTTCCGATTGCTGC 3422491 28 100.0 32 ............................ CCTCCACCCATCGACAACACAGGAGAACGGAT 3422551 28 96.4 32 ........................A... AGTCATTTCGCCCTCGTCGCGGGCCCTGGAAA 3422611 28 100.0 32 ............................ GTCAACTGGCTGGACAACGCCGGCCTGGTGAC 3422671 28 96.4 32 A........................... CATACCGCCCGCAATCGTTCCACCGACAGCGC 3422731 28 100.0 32 ............................ TGCATAAGAGGAATGAACATGGGCTTTCTGGA 3422791 28 100.0 32 ............................ ATGGTGTGACGCTGGAAGATCCAACCGAATAC 3422851 28 100.0 32 ............................ TTGACGGCGCTTCGCTATGTGGCAGGAGGTTT 3422911 28 100.0 32 ............................ ATTGAATCGGTATCTTGCACAATCTATATAAC 3422971 28 82.1 0 ......................TGTC.C | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.2 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CCTGCACCATCTGATGGCAACCACCTGGCTGCATGGCGTTCGCGACCATGTGACCATCACCAGCATCGGTGCCGTGCCATCCGAGGCAGTGCACCGACAAGTGACGCGTGTGCAGGCCAAAAGCAGTCCCGAACGCCTGCGTCGGCGCGCCATGCGCCGACATGGGATAAGTGGGGATCTCGCCGTCCAACGCATTCCAGATTCGGCGGCAGAACAGTTGCGACTTCCGTTCGTCGTACTGGGCAGCCGCAGCACCGGCCAAGCCGCGTTCCCGGTCTTCGTACGGCATGGCCCCGTACAGCAAGAACCCGTACCTGGCGACTTCAGCAGTTATGGACTCAGCCGGGGAGCCACCGTTCCCTGGTTCTGACCCTTTTTTTCTTACGACCAAACCCACCAAGGAAAAACAAACACTTAGCAGCCGCCCCAGAAAAAGGGGTTGGCTGCTTTTCTTTATGCGTTTATCTTTCAAGTCAAAGACTTGGATAATAGAACGCCTA # Right flank : CCAGCACTTTCAATCTTCATCTTCATGGCGTTGCGCATAGAAATCTGCCGCCGCCTCGATCAGGTAGGTATAGCGTTTCACCATCGCCTGCCAGGCCAGCGCCTCCACTTGGTGTTCGACGTGGATATCCTCCGGCACCTCGCTAACCTCATCGATCAACTTTGGGACTTCGTGATTCCACCAACGCAGCATCAGGTCTGGCCGCTGATGCGTGCGAATCAGCGACTCCACCAGCGACTGCATCGCCGCGAATTGCCGCACCGTGCGAATGCGCTGGCCTTCCAAGAAGTGCGTGCGCTCCTGTTGCTCAGCCAACGCCTCTTCCAGGGCATCCAGCCGCTGGCGGAGGTCAGCAGGCCCTCGACCGAAAACTCTCATGCGATTACTCCCCGCCCAGCGCGAGCCGGGGCACCTGCGGTGCTTTCAGCAACAGCTTCTTGAAGTAGCTGTCCTTGTAGTAAAAAATCTTGTCCGCCAGGATCGGATAGCCAATGCCCTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //