Array 1 667530-669741 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUI010000001.1 Streptococcus thermophilus strain 24854 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 667530 36 100.0 30 .................................... CTAGGCAATCTTGAATATAACGATATCAAG 667596 36 100.0 30 .................................... GGAAAGGTAGTGATGGACGAGATGGTATTC 667662 36 100.0 30 .................................... ATAATCACGATGACATCATAGGAGGGATTG 667728 36 100.0 30 .................................... TCCTTTTTTGAAACGGTAAACTCAAACGTA 667794 36 100.0 30 .................................... GATATCTATGTGGAACTTATAACCGCTAAG 667860 36 100.0 29 .................................... ACTATTTGGCACCCGTTGGATTCGATTGG 667925 36 100.0 30 .................................... GAGGCTTCACTTGCTAACGAGTTCGTCTTT 667991 36 100.0 30 .................................... AATTTGTGAGCTCTGGTTTTAGAGTAATTT 668057 36 100.0 30 .................................... AGCATCTGTGAACTTGATGTCTGGCAATTT 668123 36 100.0 30 .................................... TCTCATAATCACCAATGCCGTCAACGTTGT 668189 36 100.0 30 .................................... TAAGAAATCAACGCAGATTTTCAGAACACA 668255 36 100.0 30 .................................... ACTACTGCAGATTTTGAATATCTTACTCGT 668321 36 100.0 30 .................................... GGAAGTCATGGTTAATAATTGGGAATTGTT 668387 36 100.0 30 .................................... GGTAGAGATTTTGTCTTGGCGAGTGTGCCT 668453 36 100.0 30 .................................... CGAATCAGAAAACATATGGATGCATCTCGT 668519 36 100.0 30 .................................... GTGGAATAGATGAATAGACTTAAAGAGTTA 668585 36 100.0 30 .................................... AAACTTACTAGTTGAGAACGCAACCCCTCC 668651 36 100.0 30 .................................... GCAATTTATTCGCTTGATGTACTCACGCTT 668717 36 100.0 30 .................................... GTTTTCAATCAGATTGGTTTATTGAACAGG 668783 36 100.0 30 .................................... AGTCACCTCAAATCTTAAAATTGGGCTGAA 668849 36 100.0 30 .................................... AAAATCAATGGAAAAAGATTGTGGAATCAA 668915 36 100.0 29 .................................... ATGCCAACACAGCTACTCAAAGGGTAATT 668980 36 100.0 30 .................................... TCACATGTAGGCAAATATACCGACGAGGTA 669046 36 100.0 29 .................................... ATGCCAACACAGCTACTCAAAGGGTAATT 669111 36 100.0 29 .................................... TAATTTCAATATCTTTGAACACTATCAGG 669176 36 100.0 30 .................................... ATCATGACCCCAACGTGGCCACCTGCACCA 669242 36 100.0 31 .................................... TTGGCGTCGTCAGTGCTCGCAGTTGATTGAA 669309 36 100.0 30 .................................... TAGTCGTGGTGACAGAATTAGACCGTTTAG 669375 36 100.0 31 .................................... CAACGTTGATGAATATTGTTGATAAACTTTA 669442 36 100.0 30 .................................... GAAGATGGTGATGCAGATGTGCTCTCTGAA 669508 36 100.0 30 .................................... GGCAGCATCAAATGATGGTTTTGTCATCGG 669574 36 100.0 30 .................................... TACATCGTGGAAAAACAGTTAAAGCTTCTA 669640 36 100.0 30 .................................... AGCTCTCGTCCAAAGAATGGACCATCTTAA 669706 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTCGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 908777-909976 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUI010000001.1 Streptococcus thermophilus strain 24854 contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 908777 36 100.0 37 .................................... CAAAAGGCTTTTATGAGGAAGGTGTCGCTGTACTTCC 908850 36 100.0 36 .................................... GCTATCTGGATTTTCTTCCTTGAATTTTTCAAACCA 908922 36 100.0 39 .................................... ACTTACATATTCCAAAATTAGCTCTTTGATGTCATTATT 908997 36 100.0 35 .................................... TGTATTTTCATTTACTTTATAGCTAAAGTGTTTAA 909068 36 100.0 37 .................................... TAACTGCTGTCTTATCTAGAGGATATTCTCTTAAAAC 909141 36 100.0 37 .................................... ATCTTTGTTCAATTTATTGTAAATATTCGACATTTTA 909214 36 100.0 39 .................................... TCATAAGCTGTTGTTTTTTAAATTGATCGTAATAAGTAT 909289 36 100.0 38 .................................... TCATGATATTTATTATCTGCCGAATGATTTGATAAGCG 909363 36 100.0 36 .................................... GCGAATTCTTCTTGTGTCAGGTTATGACGTGCTCGA 909435 36 100.0 36 .................................... AGACATATAGCTTTTGTCAGCATAATAATTATCATC 909507 36 100.0 34 .................................... TGGTAGCGTATGTTCTAACTGGCATTATTATTTC 909577 36 100.0 40 .................................... GTGGCAGTAACTTTAACTTTAATAGAAGCACTCATGATTA 909653 36 97.2 35 ......A............................. TCTTTCTTGATAATATTCAAAGATATTGAAATTAG 909724 36 97.2 37 ......A............................. ATATTTGCAACTCGATTTTCAGCTACTCCGGCAATAG 909797 36 97.2 38 ......A............................. CGTTTGTTTAATTGCAATAATGCTCGCAAACTATCAAG 909871 36 94.4 34 ......A..........T.................. GCTCCTACCCATTGTGGCTCATTCATTTGCTTTA 909941 36 80.6 0 ......A.......................TTTTTT | ========== ====== ====== ====== ==================================== ======================================== ================== 17 36 98.0 37 GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1385856-1384500 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUI010000001.1 Streptococcus thermophilus strain 24854 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1385855 36 100.0 31 .................................... CAAATTTGTCAAAATCAAAGTTAATTTTTCC 1385788 36 100.0 30 .................................... GATTCAGTGGATGCGTATTACCGAGGAGGT 1385722 36 100.0 30 .................................... CCATCTTAACGAGAACATTGGAGAGTTAAA 1385656 36 100.0 30 .................................... AACAGCAATTAACACAGTATATACAGAACT 1385590 36 100.0 30 .................................... AACCTTTCAGAAAGAGCTCATGTAGCTATC 1385524 36 100.0 30 .................................... TAAAGAAGACATTCAAGTTAATTATGAAAA 1385458 36 100.0 30 .................................... TATTGACCGCTTCGATGTTGTTCAAACAGA 1385392 36 100.0 30 .................................... TTTTTAACTGTGAAGGAATTAAAGTGGAAG 1385326 36 100.0 29 .................................... ATGGCCTATGCTTAATAAAATATCTTAAA 1385261 36 100.0 30 .................................... GCTATACCCTAATATAGCTGAACACGTCAA 1385195 36 100.0 30 .................................... AGTGAAATTTAACGAAGTAATGCACAAAGT 1385129 36 100.0 30 .................................... TTAGAAAGTGTTTTACTTGCGAGACTAGAT 1385063 36 100.0 30 .................................... TCATAGAGTGGAAAACTAGAAACAGATTCA 1384997 36 100.0 30 .................................... AAGTCGTGTCAGAAAGATTGCTGACCGTTT 1384931 36 100.0 30 .................................... AGATAAATTGCCAGACATGAGACGTTATTT 1384865 36 100.0 30 .................................... CCTTAAGCGTGCCCGTGGTTTCACAGCTTT 1384799 36 100.0 30 .................................... TGATTTTATATACCGAAAAGACTACGTCTT 1384733 36 100.0 30 .................................... CACTTTCTTTATCACGACCTAGATTATCTT 1384667 36 100.0 30 .................................... TCAAAGCCTTGTCTGATCACACGAAAAAGA 1384601 36 100.0 30 .................................... CCATTTCTATGGAGTTTACGGTGACGTCGT 1384535 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : ATTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTAATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGATAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //