Array 1 211708-210863 **** Predicted by CRISPRDetect 2.4 *** >NZ_OUNB01000012.1 Brochothrix thermosphacta isolate TAP 175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 211707 33 100.0 35 ................................. GCATTCAACATTTTGACAAATGAGTCAACTATTAC 211639 33 100.0 35 ................................. ACAGCATTAAATAAATTTACGATTAAAGCTGACAC 211571 33 100.0 34 ................................. ATATAGTACCCGAATTGATTGGTTTGGATATGTT 211504 33 100.0 35 ................................. AGTTTGAAGTTTAACGTGTTTAAAGGATATTCAGA 211436 33 100.0 35 ................................. AGTTCAGGGTGGTTGTTTGATGTTGATTACACGAA 211368 33 100.0 36 ................................. GCTTTTACAGCGGCAGCGTCAAGTAATGACGCCTAT 211299 33 100.0 35 ................................. AGCTTGATTTTACAACGTTAAATAAATTTACGATT 211231 33 100.0 35 ................................. TCGTTATGTTTATAATGATTCGGTTGAATTTTTCG 211163 33 100.0 36 ................................. GTATAAAAAGAAATAACTTGTTTCACCTTTAGTCGG 211094 33 100.0 33 ................................. CAATTCTAAAATATCAATATCTGTCATTGTGTC 211028 33 100.0 33 ................................. GGCAATTCCATCGCCATTAGCACCAACAACCAA 210962 33 100.0 34 ................................. AATTTTATGAGTTTCCATATTTTCCTCCTTTCTT 210895 33 97.0 0 .....................A........... | ========== ====== ====== ====== ================================= ==================================== ================== 13 33 99.8 35 GTCGCACTCTGTATGGAGTGCGTGGATTTAAAT # Left flank : CTCGATCAGTACCCGCCATTTTTATGGAAGTAGGTGAACAAAATGATGGTTGTGATAACCTATGATGTAGCAACATCGAAACCTGGTGGAATCAAACGTTTGCGTCACGTATCAAAAAAATGTTTAGATCATGGGCAACGAGTTCAAAATTCCGTATTTGAATGTGTTTTGAATAGTACAGAATTAGCTGTTTTAAAAATTGAATTAAAAAAAATCATTGACGAAAAAGAGGATAGTCTTCGTATTTATGTATTAGGAAATCATTATAAAAATAAAATTGAACATTTTGGAGTAAAGACCTCGATTGATGTTGAAGGTACACTTATTTTTTAGTGCGAATCCAAGGTGCACAGAAATTCACTAGAAGACTCGCACCTCTTTTTATCAAGTATTATAAGCAAATTAAGTAATAAAAGTTGGAAATTCACTTTTATTCTAATGTAATAGGCATTTTCAAATGGTTTCAGCTATTAATTAGCTAAAATCAGCCGAAAATCGCA # Right flank : CTGCATTAATCAGTTTAGATATGCTGTCGCACTCCACCGGGCGTGCGATTTTTCATTATAAAAAAACAAATATAGTAGTATGTGTAATGCTGCTATGATCAAAAATTAAAACTTCTTAAATATGTCTCTATAAAATATAGAAAACCTTCGATTCGAAAATAGTGTTTTTATAATGCCCGGTAAAAATAACACTGTGGTTTGTTTTATAAAATAAATAGGTGAAATACATTATTAAATTATGTTTATCTTCCAAATGATTGTTTTAGAACGAGAGCGTTTCTTTTGTAACCAAATAAAGTGCTTTTAGCTAACAAATTAATAAGCTATTACGAAATTACAGTTAGATTATAGATAGTAGCGACTGTCCCTTATGCTCGAAATTTGCTATACTTAACAGGTTGAACAGATCAAATAGGAACAGGTGGAGATGAACAGATGGGGAACCCAAACGAAACAAATAAATTAAACATTCTGATTGAACAAATCGGCCTCTCCGACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 228540-228110 **** Predicted by CRISPRDetect 2.4 *** >NZ_OUNB01000012.1 Brochothrix thermosphacta isolate TAP 175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 228539 36 100.0 30 .................................... TCAAGCAGGATATATTAAGCGTAAGTACCG 228473 36 100.0 30 .................................... TTCTGCAAATGCTCGTTTAACAGAAGGAGA 228407 36 100.0 30 .................................... AACGTGATGCGATTACCGAACGTATGCAGA 228341 36 100.0 30 .................................... TGACTAAGAAAATGGAAGTCCAGTCTAGGA 228275 36 97.2 30 A................................... AATGAAATTGCTTCAGTTACAAGTAAAGTA 228209 36 100.0 30 .................................... TTCTTGTTGTGTCTTTTGTATAAATGGTTT 228143 34 86.1 0 ..............A...........--.....G.G | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 97.6 30 GTTTTAGAGCTGTGTTAAATTGAATGGTATTAAAAC # Left flank : TATTACTAAAATTTATAAACAGCTAGAAAAACAGTATCATAATAATAAGGAAATCGATCTTATTGCTGATCAATTAGTAGAGCTCCGTCAACTTATAGGCATTCAGTTAAATGACTATGATTTACCGCTACAACTGAATGAAGAAGTAAAACTATCTTCGCTTTATAAGCTGTTTAATGTTACTATAGAGGTTGAAACAGAGTCGATTTTGGATAGATTATTACTACTGATTGATCTTGTCGCACAATTGAAAATCGCTCGTATCATTATTTTGAATAATGTAAGGTGTTATTTTGTAGAGCACGAGCTTCTAGAAGTATACAAGTACGCACTTTATAAAAACATAAAGCTATTACTGATTGAACCAACCTTTAAAAAAGGCAAATTGCAATATGAACGAAAATTACAAATTGATAATGATTATATCGAATTTTGGCAGTAATACCTTCATTTTTGAATCGCGCAACGAGAGCAGTAATGACAAAATTTCATTGTTTGAG # Right flank : ATTGACGTCCATTGATATAATGGGTGTCTTTTTTTGTTATCTATAACTTTATTATGTCAACTAAATAAAGGGCATTTAAAATAACATGACAAACGTTGTTATGCAAGGTATGATAGAACTAGATTAACATTACTTAAAGGTGGTCGGAGGATGACTGGATTAAAAATTAAGCAATTTAAATTAGATAAACAGGCGATTAAGCAAATTAGTGATGACTATATTGTCGATTATCCAACTGTTTATTTATTAAATAATGATAAAGAAGCGTATATCGGCGAAACTGTCGCACTGAAGAATAGAATGCGTGTTCATTTAGCCAATCCGCAGCGCAGTAAACTTACAAAAGCTCATGTCATCAGCCACAATGAATTTAATCAATCCGCCACCTATAATATTGAAACGAAGCTGATTAATTACTTTTTAGCGGATCAAAAATATATCTTACAAAATAAAAGTCAAACGGTTCAAAGTATCACTCATAACTACCATAATAAAGCTTA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTAAATTGAATGGTATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //